BAC Information

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BAC

Clone NameB6Ng01-038M08
Chromosome13 (Build37)
Map Location 76,209,079 - 76,282,614
singlet/doubletdoublet
Overlap geneArsk, AK129128
Upstream genePcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150
Downstream geneGm276, Mctp1, LOC666603, EG666607, Ankrd32, 2210408I21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038M08.bB6Ng01-038M08.g
ACCDH866231DH866232
length1,1161,102
definitionDH866231|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M08, 5' end.DH866232|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,281,476 - 76,282,614)(76,209,079 - 76,210,189)
sequence
gaattctgtatgtgcaacattttgttttacacattcctcctgacctatat
ccatagatttatattcaattgtttcaattctactaattctttaatgctat
taatggccacttattcatatttcagtaagttcataccacaaaggcacgta
aatatatttaaattttaggttgtcagtaaaatgtaatctacttactcttt
tttcacaagacatttattattgcatgtgagttataaatattctaaaattt
gtaatcgaaacataagcaatgaccatatccatgttatattttgacacacc
aatatttacagaagacactcttaaaaatacttatgtaggaaggcagaaaa
attgaatgctttcatgtgctctgaggatctccatacagaaacactaaaag
acaatgagttgacagaaaagataagaggtcccgctgggcttagattacat
ttaccaagagctaaagacaaccttttcttctcccactgtgttctctgtag
gcaaggagggaaatgtcctaaaagctaacttttattcttttaatgatttc
tttcttttctctttaaaaaagagtctgccaggagaaatatcaaaaaaggg
tttttttgtttgtttgttttaatctacttgatgttgcatgaaaaacaact
tgttcaagaaacataaaatgctgcaaaaattaaaactacacttctgattg
aatttatgtactatttatgcttcaagcctcaaatatcacaacatataata
cagtttctgtggttagttaaaaaggagtagtacatattcatgtgactgaa
gcttggtgatgtcagagtcagcaatgtctacaataacaagagtgtagtta
aaaaaaggagcaaacactgtaagctgcctagtttatgtgttaactgctat
actctgtattttatttactctaagtttactgacattgtatagaaaattgt
ggagggttgttttgttttgtgttttttagtaaaccttcatcactgaaaaa
ataacacattgtatacctccagtacatctagtgattgttcctttgaacta
tatggattcgcgaagatgtagtcataattgggatacttcattcttctgat
tttatttacgtcgaaa
gaattcctctgagtgtatccactgggcttctgaggacctttcagcaaatc
ctcaggttccatagaaggagttcatggtcacgaatcaccaaatttattcc
tctccatcagtgtttggagtgtcaaacaattcatctcttagaagtaagct
gccttataattacctaccacatgactgtgttcagcaaagtgcagacctgt
tcaaggccaattgtattttgtttcaaagaaaatagctttctatgacactg
ctttatgtatgaacaaatctgagaacttacgaatgattaaaatacaaagg
gccctttattctgttatttttgtgagtcaagagtctcaaagttctaagtc
ctaggtatctaagcaactgcttcgtgagatatctgaggatgctcctgcaa
accccaagtagcacaacttgttggaaaaatattttctttatgaaattgtg
tattaattataccacctacctagcatggcatctgtctcagcacacatagc
ataataaaatgctctaatgttcttaatttcattttcagtaaatttcccag
tgcagttttttgtataggaggagtaaaaatccacagggtgcatttgtgac
aaagtcaaccactttgggattttgattgcatcataagctacctgaaaagg
aagaagaaaaagctttacatttgcaaatcaaaatatccctttcttccaat
gagtatctgtggtgaacttcaaaatgtttcctacatagaatgacgggaaa
gaatagcctctggtttccatctgcacctggagctgatccagtggataaaa
agacagcattttcaacaaattgtgctgactcaactggtggttaacatgta
gaggatgcaaattgatcattcttatctcctttacaaagctcagtccaagt
ggatcaaggacctccacataaaaccagcgacactgaaactttttttccac
tggacggtttagctcccttgtcaagatcaagtgacataggtgtgtgggtt
tatttctgagtctcaattctattccattgatctcctgtctgtcgctgtac
tagtatgatgaatttttttttttttcaccattgctctgtagtacagcttg
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76281476_76282614
seq2: B6Ng01-038M08.b_45_1160 (reverse)

seq1  TTTCAGACGTAAATAAATATTCAGAAGATATGAAGTATCCCAAATAATGA  50
      |||| |||||||||||  | |||||||| |||||||||||| ||| ||| 
seq2  TTTC-GACGTAAATAA--AATCAGAAGA-ATGAAGTATCCC-AATTATG-  44

seq1  ACTACATTCTTTCGCGAATTCCCATATAGTTCAAAGGAACAATCACTAGA  100
      |||||||   |||||||||  |||||||||||||||||||||||||||||
seq2  ACTACAT--CTTCGCGAAT--CCATATAGTTCAAAGGAACAATCACTAGA  90

seq1  TGGTACTGGAGGTTATACAATGGTGTTATTTTTTTCAGTTGATGGAAGGT  150
      | |||||||||| |||||||| |||||| ||||||||| |||| ||||||
seq2  T-GTACTGGAGG-TATACAAT-GTGTTA-TTTTTTCAG-TGAT-GAAGGT  134

seq1  TTACTAAAAAAACAACAAAACAAAACAACCCTCCCACAATTTTCTTATTA  200
      |||||||||||   |||||||||||||||||| ||||||||||||   ||
seq2  TTACTAAAAAA--CACAAAACAAAACAACCCT-CCACAATTTTCT--ATA  179

seq1  CAATGTCAGTAAACTTAGAGTAAATAAAATACAGAGTATAGCAGTTAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCAGTAAACTTAGAGTAAATAAAATACAGAGTATAGCAGTTAACA  229

seq1  CATAAAACTAGGCAGCTTACAGTGTTTGCTCCTTTTTTTTAACTACACTC  300
      ||| |||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAT-AAACTAGGCAGCTTACAGTGTTTGCTCC-TTTTTTTAACTACACTC  277

seq1  TTGTTATTGTAGACATTGCTGACTCTGACATCACCAAGCTTCAGTCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATTGTAGACATTGCTGACTCTGACATCACCAAGCTTCAGTCACAT  327

seq1  GAATATGTACTACTCCTTTTTAACTAACCACAGAAACTGTATTATATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGTACTACTCCTTTTTAACTAACCACAGAAACTGTATTATATGTT  377

seq1  GTGATATTTGAGGCTTGAAGCATAAATAGTACATAAATTCAATCAGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATTTGAGGCTTGAAGCATAAATAGTACATAAATTCAATCAGAAGT  427

seq1  GTAGTTTTAATTTTTGCAGCATTTTATGTTTCTTGAACAAGTTGTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTTAATTTTTGCAGCATTTTATGTTTCTTGAACAAGTTGTTTTTC  477

seq1  ATGCAACATCAAGTAGATTAAAACAAACAAACAAAAAAACCCTTTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAACATCAAGTAGATTAAAACAAACAAACAAAAAAACCCTTTTTTGA  527

seq1  TATTTCTCCTGGCAGACTCTTTTTTAAAGAGAAAAGAAAGAAATCATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTCCTGGCAGACTCTTTTTTAAAGAGAAAAGAAAGAAATCATTAA  577

seq1  AAGAATAAAAGTTAGCTTTTAGGACATTTCCCTCCTTGCCTACAGAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAAGTTAGCTTTTAGGACATTTCCCTCCTTGCCTACAGAGAAC  627

seq1  ACAGTGGGAGAAGAAAAGGTTGTCTTTAGCTCTTGGTAAATGTAATCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGGAGAAGAAAAGGTTGTCTTTAGCTCTTGGTAAATGTAATCTAA  677

seq1  GCCCAGCGGGACCTCTTATCTTTTCTGTCAACTCATTGTCTTTTAGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGCGGGACCTCTTATCTTTTCTGTCAACTCATTGTCTTTTAGTGTT  727

seq1  TCTGTATGGAGATCCTCAGAGCACATGAAAGCATTCAATTTTTCTGCCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGGAGATCCTCAGAGCACATGAAAGCATTCAATTTTTCTGCCTT  777

seq1  CCTACATAAGTATTTTTAAGAGTGTCTTCTGTAAATATTGGTGTGTCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACATAAGTATTTTTAAGAGTGTCTTCTGTAAATATTGGTGTGTCAAA  827

seq1  ATATAACATGGATATGGTCATTGCTTATGTTTCGATTACAAATTTTAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACATGGATATGGTCATTGCTTATGTTTCGATTACAAATTTTAGAA  877

seq1  TATTTATAACTCACATGCAATAATAAATGTCTTGTGAAAAAAGAGTAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAACTCACATGCAATAATAAATGTCTTGTGAAAAAAGAGTAAGT  927

seq1  AGATTACATTTTACTGACAACCTAAAATTTAAATATATTTACGTGCCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACATTTTACTGACAACCTAAAATTTAAATATATTTACGTGCCTTT  977

seq1  GTGGTATGAACTTACTGAAATATGAATAAGTGGCCATTAATAGCATTAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATGAACTTACTGAAATATGAATAAGTGGCCATTAATAGCATTAAA  1027

seq1  GAATTAGTAGAATTGAAACAATTGAATATAAATCTATGGATATAGGTCAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAGTAGAATTGAAACAATTGAATATAAATCTATGGATATAGGTCAG  1077

seq1  GAGGAATGTGTAAAACAAAATGTTGCACATACAGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATGTGTAAAACAAAATGTTGCACATACAGAATTC  1116

seq1: chr13_76209079_76210189
seq2: B6Ng01-038M08.g_67_1168

seq1  GAATTCCTCTGAGTGTATCCACTGGGCTTCTGAGGACCTTTCAGCAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGAGTGTATCCACTGGGCTTCTGAGGACCTTTCAGCAAATC  50

seq1  CTCAGGTTCCATAGAAGGAGTTCATGGTCACGAATCACCAAATTTATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTCCATAGAAGGAGTTCATGGTCACGAATCACCAAATTTATTCC  100

seq1  TCTCCATCAGTGTTTGGAGTGTCAAACAATTCATCTCTTAGAAGTAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCAGTGTTTGGAGTGTCAAACAATTCATCTCTTAGAAGTAAGCT  150

seq1  GCCTTATAATTACCTACCACATGACTGTGTTCAGCAAAGTGCAGACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATAATTACCTACCACATGACTGTGTTCAGCAAAGTGCAGACCTGT  200

seq1  TCAAGGCCAATTGTATTTTGTTTCAAAGAAAATAGCTTTCTATGACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCAATTGTATTTTGTTTCAAAGAAAATAGCTTTCTATGACACTG  250

seq1  CTTTATGTATGAACAAATCTGAGAACTTACGAATGATTAAAATACAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTATGAACAAATCTGAGAACTTACGAATGATTAAAATACAAAGG  300

seq1  GCCCTTTATTCTGTTATTTTTGTGAGTCAAGAGTCTCAAAGTTCTAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTATTCTGTTATTTTTGTGAGTCAAGAGTCTCAAAGTTCTAAGTC  350

seq1  CTAGGTATCTAAGCAACTGCTTCGTGAGATATCTGAGGATGCTCCTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTATCTAAGCAACTGCTTCGTGAGATATCTGAGGATGCTCCTGCAA  400

seq1  ACCCCAAGTAGCACAACTTGTTGGAAAAATATTTTCTTTATGAAATTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGTAGCACAACTTGTTGGAAAAATATTTTCTTTATGAAATTGTG  450

seq1  TATTAATTATACCACCTACCTAGCATGGCATCTGTCTCAGCACACATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTATACCACCTACCTAGCATGGCATCTGTCTCAGCACACATAGC  500

seq1  ATAATAAAATGCTCTAATGTTCTTAATTTCATTTTCAGTAAATTTCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAATGCTCTAATGTTCTTAATTTCATTTTCAGTAAATTTCCCAG  550

seq1  TGCAGTTTTTTGTATAGGAGGAGTAAAAATCCACAGGGTGCATTTGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTTTTGTATAGGAGGAGTAAAAATCCACAGGGTGCATTTGTGAC  600

seq1  AAAGTCAACCACTTTGGGATTTTGATTGCATCATAAGCTACCTGAAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAACCACTTTGGGATTTTGATTGCATCATAAGCTACCTGAAAAGG  650

seq1  AAGAAGAAAAAGCTTTACATTTGCAAATCAAAATATCCCTTTCTTCCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAAAGCTTTACATTTGCAAATCAAAATATCCCTTTCTTCCAAT  700

seq1  GAGTATCTGTGGTGAACTTCAAAATGTTTCCTACATAGAATGACGGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATCTGTGGTGAACTTCAAAATGTTTCCTACATAGAATGACGGGAAA  750

seq1  GAATAGCCTCTGGTTTCCATCTGCACCTGGAGCTGATCCAGTGGATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCCTCTGGTTTCCATCTGCACCTGGAGCTGATCCAGTGGATAAAA  800

seq1  AGACAGCATTTTCAACAAATTGTGCTGACTCAACTGGTGGTTAACATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCATTTTCAACAAATTGTGCTGACTCAACTGGTGGTTAACATGTA  850

seq1  GAAGGATGCAAATTGATCATTCTTATCTCCCTTTACAAAGCTCAAGTCCA  900
      | |||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  G-AGGATGCAAATTGATCATTCTTATCT-CCTTTACAAAGCTC-AGTCCA  897

seq1  AGTGGATCAAGGACCTCCACATAAAACCAGCGACACTGAAAC-TTTTTTC  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTGGATCAAGGACCTCCACATAAAACCAGCGACACTGAAACTTTTTTTC  947

seq1  CACTGGACGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTG  999
      |||||||||| ||||||||||||||| |||||||||||| ||||||||||
seq2  CACTGGACGG-TTTAGCTCCCTTGTC-AAGATCAAGTGA-CATAGGTGTG  994

seq1  TGGGTTTATTTCTGAGTCTTCAATTCTATTCCATTGATCTACCTGTCTGT  1049
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  TGGGTTTATTTCTGAGTC-TCAATTCTATTCCATTGATCT-CCTGTCTGT  1042

seq1  CGCTGTACTAGTATGATGAATTTTTTTTTTTTTATCACAATTGCTCTGTA  1099
      ||||||||||||||||||||||||||||||||  |||| |||||||||||
seq2  CGCTGTACTAGTATGATGAATTTTTTTTTTTT--TCACCATTGCTCTGTA  1090

seq1  GTACAGCTTGAG  1111
      ||||||||||||
seq2  GTACAGCTTGAG  1102