BAC Information

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BAC

Clone NameB6Ng01-038M10
Chromosome13 (Build37)
Map Location 76,209,079 - 76,282,614
singlet/doubletdoublet
Overlap geneArsk, AK129128
Upstream genePcsk1, LOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150
Downstream geneGm276, Mctp1, LOC666603, EG666607, Ankrd32, 2210408I21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038M10.bB6Ng01-038M10.g
ACCDH866235DH866236
length1,0621,168
definitionDH866235|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M10, 5' end.DH866236|Mus musculus domesticus DNA, BAC clone: B6Ng01-038M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,281,543 - 76,282,614)(76,209,079 - 76,210,263)
sequence
gaattctgtatgtgcaacattttgttttacacattcctcctgacctatat
ccatagatttatattcaattgtttcaattctactaattctttaatgctat
taatggccacttattcatatttcagtaagttcataccacaaaggcacgta
aatatatttaaattttaggttgtcagtaaaatgtaatctacttactcttt
tttcacaagacatttattattgcatgtgagttataaatattctaaaattt
gtaatcgaaacataagcaatgaccatatccatgttatattttgacacacc
aatatttacagaagacactcttaaaaatacttatgtaggaaggcagaaaa
attgaatgctttcatgtgctctgaggatctccatacagaaacactaaaag
acaatgagttgacagaaaagataagaggtcccgctgggcttagattacat
ttaccaagagctaaagacaaccttttcttctcccactgtgttctctgtag
gcaaggagggaaatgtcctaaaagctaacttttattcttttaatgatttc
tttcttttctctttaaaaaagagtctgccaggagaaatatcaaaaaaggg
tttttttgtttgtttgttttaatctacttgatgttgcatgaaaaacaact
tgttcaagaaacataaaatgctgcaaaaattaaaactacacttctgattg
aatttatgtactatttatgcttcaagcctcaaatatcacaacatataata
cagtttctgtggttagttaaaaaggagtagtacatattcatgtgactgaa
gcttggtgatgtcagagtcagcaatgtctacaataacaagagtgtagtta
aaaaaaaggagcaaacactgtaagctgcctagttttatgtgttaactgct
atactctgtattttatttactctaagtttactgacattgtaatagaaatt
gtgggaggttgtttgttttgttgttttttagtaatcttcatcaactgaaa
aaataacatcattgtataacttcagtacatctagtgattgttcctttgaa
ctatatgggaat
gaattcctctgagtgtatccactgggcttctgaggacctttcagcaaatc
ctcaggttccatagaaggagttcatggtcacgaatcaccaaatttattcc
tctccatcagtgtttggagtgtcaaacaattcatctcttagaagtaagct
gccttataattacctaccacatgactgtgttcagcaaagtgcagacctgt
tcaaggccaattgtattttgtttcaaagaaaatagctttctatgacactg
ctttatgtatgaacaaatctgagaacttacgaatgattaaaatacaaagg
gccctttattctgttatttttgtgagtcaagagtctcaaagttctaagtc
ctaggtatctaagcaactgcttcgtgagatatctgaggatgctcctgcaa
accccaagtagcacaacttgttggaaaaatattttctttatgaaattgtg
tattaattataccacctacctagcatggcatctgtctcagcacacatagc
ataataaaatgctctaatgttcttaatttcattttcagtaaatttcccag
tgcagttttttgtataggaggagtaaaaatccacagggtgcatttgtgac
aaagtcaaccactttgggattttgattgcatcataagctacctgaaaagg
aagaagaaaaagctttacatttgcaaatcaaaatatccctttcttccaat
gagtatctgtggtgaacttcaaaatgtttcctacatagaatgacgggaaa
gaatagcctctggtttccatctgcacctggagctgatccagtggataaaa
agacagcattttcaacaaattgtgctgactcaactggtggttaacatgta
gaaggatgcaaattgatcattcttatctccctttacaaagctcaagtcca
agtggatcaaggacctccacataaaaccagcgacactgaaacttttttcc
actggacgttttagctccttgtcaagatcaagtgacataagtgtgtgggt
tatttctgagtcttcaattcaatcattgatctacctgtctgtcgctgtac
tagatgatgaattttttttttttatacacattgcttgtagtacagctgag
gtcagcatggtgatttcccaaaggtcttttattgtgagaatgtttttgct
atctctagtttttgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76281543_76282614
seq2: B6Ng01-038M10.b_46_1107 (reverse)

seq1  ATTCCCATATAGTTCAAAGGAACAATCACTAGATGGTACTGGAGGTTATA  50
      |||||||||||||||||||||||||||||||||| ||||| || ||||||
seq2  ATTCCCATATAGTTCAAAGGAACAATCACTAGAT-GTACT-GAAGTTATA  48

seq1  CAATGGTGTTATTTTTTTCAGTTGATGGAAGGTTTACTAAAAAAACAACA  100
      ||||| ||||| |||||||||||||||  | | ||||| |||||||||||
seq2  CAATGATGTTA-TTTTTTCAGTTGATG--AAGATTACT-AAAAAACAACA  94

seq1  AAACAAAACAACCCTCCCACAATTTTCTTATTACAATGTCAGTAAACTTA  150
      |||| |||||| |||||||||||||   ||||||||||||||||||||||
seq2  AAAC-AAACAA-CCTCCCACAATTT--CTATTACAATGTCAGTAAACTTA  140

seq1  GAGTAAATAAAATACAGAGTATAGCAGTTAACACATAAAACTAGGCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATAAAATACAGAGTATAGCAGTTAACACATAAAACTAGGCAGCT  190

seq1  TACAGTGTTTGCTCCTTTTTTTTAACTACACTCTTGTTATTGTAGACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTTTGCTCCTTTTTTTTAACTACACTCTTGTTATTGTAGACATT  240

seq1  GCTGACTCTGACATCACCAAGCTTCAGTCACATGAATATGTACTACTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTCTGACATCACCAAGCTTCAGTCACATGAATATGTACTACTCCT  290

seq1  TTTTAACTAACCACAGAAACTGTATTATATGTTGTGATATTTGAGGCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACTAACCACAGAAACTGTATTATATGTTGTGATATTTGAGGCTTG  340

seq1  AAGCATAAATAGTACATAAATTCAATCAGAAGTGTAGTTTTAATTTTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAAATAGTACATAAATTCAATCAGAAGTGTAGTTTTAATTTTTGC  390

seq1  AGCATTTTATGTTTCTTGAACAAGTTGTTTTTCATGCAACATCAAGTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTTTATGTTTCTTGAACAAGTTGTTTTTCATGCAACATCAAGTAGA  440

seq1  TTAAAACAAACAAACAAAAAAACCCTTTTTTGATATTTCTCCTGGCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAAACAAACAAAAAAACCCTTTTTTGATATTTCTCCTGGCAGAC  490

seq1  TCTTTTTTAAAGAGAAAAGAAAGAAATCATTAAAAGAATAAAAGTTAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTAAAGAGAAAAGAAAGAAATCATTAAAAGAATAAAAGTTAGCT  540

seq1  TTTAGGACATTTCCCTCCTTGCCTACAGAGAACACAGTGGGAGAAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGACATTTCCCTCCTTGCCTACAGAGAACACAGTGGGAGAAGAAAA  590

seq1  GGTTGTCTTTAGCTCTTGGTAAATGTAATCTAAGCCCAGCGGGACCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTCTTTAGCTCTTGGTAAATGTAATCTAAGCCCAGCGGGACCTCTT  640

seq1  ATCTTTTCTGTCAACTCATTGTCTTTTAGTGTTTCTGTATGGAGATCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTCTGTCAACTCATTGTCTTTTAGTGTTTCTGTATGGAGATCCTC  690

seq1  AGAGCACATGAAAGCATTCAATTTTTCTGCCTTCCTACATAAGTATTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACATGAAAGCATTCAATTTTTCTGCCTTCCTACATAAGTATTTTT  740

seq1  AAGAGTGTCTTCTGTAAATATTGGTGTGTCAAAATATAACATGGATATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGTCTTCTGTAAATATTGGTGTGTCAAAATATAACATGGATATGG  790

seq1  TCATTGCTTATGTTTCGATTACAAATTTTAGAATATTTATAACTCACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTTATGTTTCGATTACAAATTTTAGAATATTTATAACTCACATG  840

seq1  CAATAATAAATGTCTTGTGAAAAAAGAGTAAGTAGATTACATTTTACTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATAAATGTCTTGTGAAAAAAGAGTAAGTAGATTACATTTTACTGA  890

seq1  CAACCTAAAATTTAAATATATTTACGTGCCTTTGTGGTATGAACTTACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAAAATTTAAATATATTTACGTGCCTTTGTGGTATGAACTTACTG  940

seq1  AAATATGAATAAGTGGCCATTAATAGCATTAAAGAATTAGTAGAATTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAATAAGTGGCCATTAATAGCATTAAAGAATTAGTAGAATTGAA  990

seq1  ACAATTGAATATAAATCTATGGATATAGGTCAGGAGGAATGTGTAAAACA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGAATATAAATCTATGGATATAGGTCAGGAGGAATGTGTAAAACA  1040

seq1  AAATGTTGCACATACAGAATTC  1072
      ||||||||||||||||||||||
seq2  AAATGTTGCACATACAGAATTC  1062

seq1: chr13_76209079_76210263
seq2: B6Ng01-038M10.g_70_1237

seq1  GAATTCCTCTGAGTGTATCCACTGGGCTTCTGAGGACCTTTCAGCAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGAGTGTATCCACTGGGCTTCTGAGGACCTTTCAGCAAATC  50

seq1  CTCAGGTTCCATAGAAGGAGTTCATGGTCACGAATCACCAAATTTATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTCCATAGAAGGAGTTCATGGTCACGAATCACCAAATTTATTCC  100

seq1  TCTCCATCAGTGTTTGGAGTGTCAAACAATTCATCTCTTAGAAGTAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCAGTGTTTGGAGTGTCAAACAATTCATCTCTTAGAAGTAAGCT  150

seq1  GCCTTATAATTACCTACCACATGACTGTGTTCAGCAAAGTGCAGACCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATAATTACCTACCACATGACTGTGTTCAGCAAAGTGCAGACCTGT  200

seq1  TCAAGGCCAATTGTATTTTGTTTCAAAGAAAATAGCTTTCTATGACACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCCAATTGTATTTTGTTTCAAAGAAAATAGCTTTCTATGACACTG  250

seq1  CTTTATGTATGAACAAATCTGAGAACTTACGAATGATTAAAATACAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTATGAACAAATCTGAGAACTTACGAATGATTAAAATACAAAGG  300

seq1  GCCCTTTATTCTGTTATTTTTGTGAGTCAAGAGTCTCAAAGTTCTAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTATTCTGTTATTTTTGTGAGTCAAGAGTCTCAAAGTTCTAAGTC  350

seq1  CTAGGTATCTAAGCAACTGCTTCGTGAGATATCTGAGGATGCTCCTGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTATCTAAGCAACTGCTTCGTGAGATATCTGAGGATGCTCCTGCAA  400

seq1  ACCCCAAGTAGCACAACTTGTTGGAAAAATATTTTCTTTATGAAATTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGTAGCACAACTTGTTGGAAAAATATTTTCTTTATGAAATTGTG  450

seq1  TATTAATTATACCACCTACCTAGCATGGCATCTGTCTCAGCACACATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATTATACCACCTACCTAGCATGGCATCTGTCTCAGCACACATAGC  500

seq1  ATAATAAAATGCTCTAATGTTCTTAATTTCATTTTCAGTAAATTTCCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAATGCTCTAATGTTCTTAATTTCATTTTCAGTAAATTTCCCAG  550

seq1  TGCAGTTTTTTGTATAGGAGGAGTAAAAATCCACAGGGTGCATTTGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTTTTTTGTATAGGAGGAGTAAAAATCCACAGGGTGCATTTGTGAC  600

seq1  AAAGTCAACCACTTTGGGATTTTGATTGCATCATAAGCTACCTGAAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAACCACTTTGGGATTTTGATTGCATCATAAGCTACCTGAAAAGG  650

seq1  AAGAAGAAAAAGCTTTACATTTGCAAATCAAAATATCCCTTTCTTCCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAAAGCTTTACATTTGCAAATCAAAATATCCCTTTCTTCCAAT  700

seq1  GAGTATCTGTGGTGAACTTCAAAATGTTTCCTACATAGAATGACGGGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATCTGTGGTGAACTTCAAAATGTTTCCTACATAGAATGACGGGAAA  750

seq1  GAATAGCCTCTGGTTTCCATCTGCACCTGGAGCTGATCCAGTGGATAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGCCTCTGGTTTCCATCTGCACCTGGAGCTGATCCAGTGGATAAAA  800

seq1  AGACAGCATTTTCAACAAATTGTGCTGACTCAACTGGTGGTTAACATGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCATTTTCAACAAATTGTGCTGACTCAACTGGTGGTTAACATGTA  850

seq1  GAAGGATGCAAATTGATCATTCTTATCTCCCTTTACAAAGCTCAAGTCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGCAAATTGATCATTCTTATCTCCCTTTACAAAGCTCAAGTCCA  900

seq1  AGTGGATCAAGGACCTCCACATAAAACCAGCGACACTGAAACTTTTTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGATCAAGGACCTCCACATAAAACCAGCGACACTGAAACTTTTTTCC  950

seq1  ACTGGACGGTTTTAGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGTGT  1000
      ||||||| ||||||||| ||||||| |||||||||||| |||| ||||||
seq2  ACTGGAC-GTTTTAGCT-CCTTGTC-AAGATCAAGTGA-CATAAGTGTGT  996

seq1  GGGTTTATTTCTGAGTCTTCAATTCTATTCCATTGATCTACCTGTCTGTC  1050
      ||| ||||||||||||||||||||| ||  ||||||||||||||||||||
seq2  GGG-TTATTTCTGAGTCTTCAATTCAAT--CATTGATCTACCTGTCTGTC  1043

seq1  GCTGTACTAGTATGATGAATTTTTTTTTTTTTATCACAATTGCTCTGTAG  1100
      |||||||||| ||||||||||||||||||||   ||| |||||| |||||
seq2  GCTGTACTAG-ATGATGAATTTTTTTTTTTTATACAC-ATTGCT-TGTAG  1090

seq1  TACAGCTTGAGGTCAGGCATGGTGATTTCCCCAGAGGTTCTTTTATTGTT  1150
      |||||| |||||||| |||||||||||| |||| ||| |||||||||| |
seq2  TACAGC-TGAGGTCA-GCATGGTGATTT-CCCAAAGG-TCTTTTATTG-T  1135

seq1  GAGAATAGTTTTTGCTATC-CTAGGTTTTTTGTTAT  1185
      |||||| |||||||||||| ||||  ||||||||||
seq2  GAGAAT-GTTTTTGCTATCTCTAG--TTTTTGTTAT  1168