BAC Information

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BAC

Clone NameB6Ng01-038O11
Chromosome13 (Build37)
Map Location 71,237,760 - 71,238,822
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042291, 4930520P13Rik, EG633042, BC018507, EG620473, Adamts16, 8030423J24Rik
Downstream geneLOC627230, LOC100042360, Irx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-038O11.bB6Ng01-038O11.g
ACCDH866326DH866327
length1,0491,232
definitionDH866326|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O11, 5' end.DH866327|Mus musculus domesticus DNA, BAC clone: B6Ng01-038O11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaagtttagttcatttcaggactgtgttttactatcactccgca
gagacataagcttgcagtctcttcttgggttatagtcatgcccacctttt
atgtttaactctttccctactgtctccctgtccccttccctaggattgcc
cccctttcctgccatccatcttcctctatcctcccatccctccttaaaag
cctccttattaccctatcctggatctcattccagttttgcacccccacac
acgctcacccccacataaatacgcaatataaggatcagacactgggtccc
cccttatgacagggaatacaggatgtgcgtcctgagttttatcatttaat
gtaacatttccccaaatttaaatagtcccttctattctgtcggatcttcc
caagatactaagaaagtgcattcggtccagccaacctcatattcatttga
gtggtaatgtcagtgtctaacctcacattggtcctaggcattgcaagaac
gatgcagagatgtgtcctgtgctagttatccctcgctcttctatataaag
tgaagcttgacgctgtggttcaatgaactatgtactcgggaagccagccc
cacagttcccttagcctggatagtaagataatggctgaataatgatgggt
gccacttgcacactggaaagttgcaggcatgaggtcgacaagaggccaca
ggcctctctcacccagacctagggttttccagtcaagaccagaggcccag
aaggtgtttccttttgtatctgttcttccattcatccgcaaacactgctt
tagagacctttacccaaaccatgctcagtgccaaaggatccagactgtgg
atgtaagtattggacaagaggaagagaggccatgtgactgcaggtacccg
accagaatgcagaaaaggcagcaccaggcaagagacgggatgcatagccc
agtgacatcatcacgaaggacgcactttgcaggctgcctgagcaggaaat
cacagagtgctcattcagtcagcacgaggcctcttgaaattattcaagc
gaattccatgatcgtgggcccactgtcgtacttctctggctgtgaaatga
gttccttggtcagaagcaatactgtgtggaataccatgacgatagataag
gcattctgtcagtccatgaatggtggttttagcagaggcattacgtgcag
gaaaggcaaatccataaccagaataagtatctactccagtaagaacaaaa
cgctgacctttccatgatggaagtggcccaatgtatttcaacctgccacc
aggttgctggctggtcacctcgaggaatggtgccatatctggggctcagt
gttggcttctgctgttggcagatctggcaatcagcagcagctgtagccag
gtcagccttggtgagtggaagcctgtgttgctgagcccaagcataacctc
catctcgaccaccatggccactttgttcatgtgcccattgagcaatgtca
gggatggctggggagagaggctgactgtccacagaacaggtcatcttatc
cacatacttcttccccagatgtctttctcaccaattttccaattgtgatc
tttccaagttcctgaccatccagccaatccattggctacagcccatgagt
cagtgaataatcgtacatctggccatttcttcttacaaacaaactgtaat
accatgtgtactgcccgaagttctgcccactgtgaagatttcccttcacc
tgtgtctttcagggttgtcccagaaaggggatgtaatgctgcagctgtcc
acttctgggtggtgcctgcataatgtgcagagccatcagtaaatcagctc
tagtcttctcctcttcggtcagtcgatcatagggaacaccccatgaggct
ataggcgcatgcttggcagcagatggcattgtaacaggagtagaaaccat
aggcatttgagcaacttcttcatgtaacttgcttgtgccttcaggacctg
ctctggcccaatcacgttatatacttcttccatttgataatagactgctg
ctgggcgcgtccactttatgacttgcaggctgaatgtacccagctcatga
tgggtattcagttcgcaaagtaccttgtgtttattgcaacggtcgttttc
taaaggccaatacagcaaacgtttttcaaaggagatttgtctgcatgtag
gtagcttttctaatccaaggcttctggtttcctctaggcgcaggttaaca
gaacttagacgaacctgaacactcatgtttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_71237760_71238822
seq2: B6Ng01-038O11.b_49_1097 (reverse)

seq1  GCTTGGAATAATCTC-AGAGGCCCTCGTGGCTGACCTGAATGAGCACTCT  49
      |||| ||||||| || ||||| |||||| ||||| |||||||||||||||
seq2  GCTT-GAATAATTTCAAGAGG-CCTCGT-GCTGA-CTGAATGAGCACTCT  46

seq1  GTGATTTCCCTGCTCAGGGCAGCCTGGCAAAGTGCCGTCCCTTCGTGATG  99
      ||||||| |||||||| |||||||| |||||||| ||| |||||||||| 
seq2  GTGATTT-CCTGCTCA-GGCAGCCT-GCAAAGTG-CGT-CCTTCGTGAT-  90

seq1  GATGTCACTGGGCTATGCATCCCGTCCTCCTTGCCTGGTGCCTGCCTTTT  149
      ||||||||||||||||||||||||||   ||||||||||| |||||||||
seq2  GATGTCACTGGGCTATGCATCCCGTC--TCTTGCCTGGTG-CTGCCTTTT  137

seq1  CTGCATTCTTGGTCGGGTACCTGCAGTCACATGGCCTCTCCTTCCTCTTG  199
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  CTGCATTC-TGGTCGGGTACCTGCAGTCACATGGCCTCT-CTTCCTCTTG  185

seq1  TCCAATACTTACATCCACAGTCTGGATCCTTTGGCACTGAGCATGGTTTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATACTTACATCCACAGTCTGGATCCTTTGGCACTGAGCATGGTTTG  235

seq1  GGTAAAGGTCTCTAAAGCAGTGTTTGCGGATGAATGGAAGAACAGATACA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAGGTCTCTAAAGCAGTGTTTGCGGATGAATGGAAGAACAGATACA  285

seq1  AAAGGAAACACCTTCTGGGCCTCTGGTCTTGACTGGAAAACCCTAGGTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAACACCTTCTGGGCCTCTGGTCTTGACTGGAAAACCCTAGGTCT  335

seq1  GGGTGAGAGAGGCCTGTGGCCTCTTGTCGACCTCATGCCTGCAACTTTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAGAGAGGCCTGTGGCCTCTTGTCGACCTCATGCCTGCAACTTTCC  385

seq1  AGTGTGCAAGTGGCACCCATCATTATTCAGCCATTATCTTACTATCCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCAAGTGGCACCCATCATTATTCAGCCATTATCTTACTATCCAGG  435

seq1  CTAAGGGAACTGTGGGGCTGGCTTCCCGAGTACATAGTTCATTGAACCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGGAACTGTGGGGCTGGCTTCCCGAGTACATAGTTCATTGAACCAC  485

seq1  AGCGTCAAGCTTCACTTTATATAGAAGAGCGAGGGATAACTAGCACAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCAAGCTTCACTTTATATAGAAGAGCGAGGGATAACTAGCACAGGA  535

seq1  CACATCTCTGCATCGTTCTTGCAATGCCTAGGACCAATGTGAGGTTAGAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTCTGCATCGTTCTTGCAATGCCTAGGACCAATGTGAGGTTAGAC  585

seq1  ACTGACATTACCACTCAAATGAATATGAGGTTGGCTGGACCGAATGCACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATTACCACTCAAATGAATATGAGGTTGGCTGGACCGAATGCACT  635

seq1  TTCTTAGTATCTTGGGAAGATCCGACAGAATAGAAGGGACTATTTAAATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGTATCTTGGGAAGATCCGACAGAATAGAAGGGACTATTTAAATT  685

seq1  TGGGGAAATGTTACATTAAATGATAAAACTCAGGACGCACATCCTGTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAATGTTACATTAAATGATAAAACTCAGGACGCACATCCTGTATT  735

seq1  CCCTGTCATAAGGGGGGACCCAGTGTCTGATCCTTATATTGCGTATTTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCATAAGGGGGGACCCAGTGTCTGATCCTTATATTGCGTATTTAT  785

seq1  GTGGGGGTGAGCGTGTGTGGGGGTGCAAAACTGGAATGAGATCCAGGATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGTGAGCGTGTGTGGGGGTGCAAAACTGGAATGAGATCCAGGATA  835

seq1  GGGTAATAAGGAGGCTTTTAAGGAGGGATGGGAGGATAGAGGAAGATGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATAAGGAGGCTTTTAAGGAGGGATGGGAGGATAGAGGAAGATGGA  885

seq1  TGGCAGGAAAGGGGGGCAATCCTAGGGAAGGGGACAGGGAGACAGTAGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGAAAGGGGGGCAATCCTAGGGAAGGGGACAGGGAGACAGTAGGG  935

seq1  AAAGAGTTAAACATAAAAGGTGGGCATGACTATAACCCAAGAAGAGACTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTAAACATAAAAGGTGGGCATGACTATAACCCAAGAAGAGACTG  985

seq1  CAAGCTTATGTCTCTGCGGAGTGATAGTAAAACACAGTCCTGAAATGAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTATGTCTCTGCGGAGTGATAGTAAAACACAGTCCTGAAATGAAC  1035

seq1  TAAACTTGGAATTC  1063
      ||||||||||||||
seq2  TAAACTTGGAATTC  1049