BAC Information

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BAC

Clone NameB6Ng01-039I20
Chromosome13 (Build37)
Map Location 5,898,223 - 6,011,532
singlet/doubletdoublet
Overlap genenone
Upstream gene1700016G22Rik, Klf6
Downstream geneLOC100039388, LOC100039395, Pitrm1, Pfkp, LOC100039532
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039I20.bB6Ng01-039I20.g
ACCDH866794DH866795
length7011,146
definitionDH866794|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I20, 5' end.DH866795|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,898,223 - 5,898,954)(6,010,371 - 6,011,532)
sequence
gaattctcagctcctaaacgtcagctttcatgttccccctgtatagttgc
ctctgccatgagccttctttgccagacttgccattagaggcatcattgca
aactacattctgggcatattagtaagagctaactcttaaatggccttaaa
actttgttatgaaggaaagggaacacagagaccatcagcagcttcaggtt
tggaacaactgggtctaggttaaaggaaacagtcatccatgccagattca
aagaggaaggtgtttcggaaggggaagggacagatgcaaatgccaccagt
attgtttgttcagcttcaggcaagttagaggtcagcttgcagttgttgac
agggagaggtttagtgagcaaaatacctctatcactcagtattatcttat
aaaaatatttactaggctgtaagtgtagaacattgtgctactaacaaggc
aaattcattttgaaactctagtcctgttccagaaaacaatactcagaaaa
gacagtattgttagcacaccacggtgtgcatgtttgttgttctgtttgcc
cttggctctgtgcctgtttgaacttcgatttatgactatagagtaacaaa
tattttattattcggaattctaagatgaatgtagtgatatgaaaagtaca
tccctcgaaaaaactaactaaagtctatcttcattaggacgatccctctg
t

gaattctttctctcctttaaagactgcaagtgcagaacacgactttgaaa
tctcagggattctgtaaatctttcagatagaaatgggagatgaaatgagg
caggaaccaagcatcaaccttcagtatttgcttttggaaaaagcaaatac
tctctctctctttttttgtttgattcccctataacccctcttccctttta
tccaatgatatttaatagactctgataattcctcttccataaattcatat
ataactaaaacaatggatcttaacataccaaatactccaatctagcaaag
atagttattgaataatatgcatacacacgtgtgcaatagccacacatgtg
tgcgtatgcatatgtacatacctatttataaacacatatattgattcctt
catgcctctcacctttagaaaaaattgtttacatacagttatctgtgtat
acctgtctctttacatatacttatttgtatatagaagtatccatttctct
gtattcatctatttattttctatctctatgtggctggctgattagctctc
taggaagagagatggtagtagaaatgcatgttttctagaccatagcaaaa
ctgtgttaagacttcctttactatgcttatttagctctgaattctacttg
caacaaagcacctataatttattatccatcctgcgaatattagagctttt
gagttctgtcacacagtgtgtaataaatgcagcaagtgttgtatactttg
tgcttcaatgttgtattttttacatgttctcatcatgggagatgtcaaat
gataaatgtgataaatgtgctggtagcctcggtttggtcattacacctgt
accataatattatgtgatgtcccataagtctataccactaacttaatcaa
taaaaataaagacagaatgctttgtgaaattgatgtgttttttctggcac
taggtttttctgaccattactctcataaaaagtccattagagattgttga
aatttgaagcctcattggaaacatattcagctgaaaaaataacagttttt
acattctattaatgtgggtaacaggtgcaacattgccagcatatggcttt
gagggtagtttgcaatcattctcttttttcatctgtgggctctgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5898223_5898954
seq2: B6Ng01-039I20.b_42_742

seq1  GAATTCTCAGCTCCTAAACGTCAGCTTTCATGTTCCCCCTGTATAGTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCCTAAACGTCAGCTTTCATGTTCCCCCTGTATAGTTGC  50

seq1  CTCTGCCATGAGCCTTCTTTGCCAGACTTGCCATTAGAGGCATCATTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCATGAGCCTTCTTTGCCAGACTTGCCATTAGAGGCATCATTGCA  100

seq1  AACTACATTCTGGGCATATTAGTAAGAGCTAACTCTTAAATGGCCTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATTCTGGGCATATTAGTAAGAGCTAACTCTTAAATGGCCTTAAA  150

seq1  ACTTTGTTATGAAGGAAAGGGAACACAGAGACCATCAGCAGCTTCAGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTATGAAGGAAAGGGAACACAGAGACCATCAGCAGCTTCAGGTT  200

seq1  TGGAACAACTGGGTCTAGGTTAAAGGAAACAGTCATCCATGCCAGATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAACTGGGTCTAGGTTAAAGGAAACAGTCATCCATGCCAGATTCA  250

seq1  AAGAGGAAGGTGTTTCGGAAGGGGAAGGGACAGATGCAAATGCCACCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGGTGTTTCGGAAGGGGAAGGGACAGATGCAAATGCCACCAGT  300

seq1  ATTGTTTGTTCAGCTTCAGGCAAGTTAGAGGTCAGCTTGCAGTTGTTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGTTCAGCTTCAGGCAAGTTAGAGGTCAGCTTGCAGTTGTTGAC  350

seq1  AGGGAGAGGTTTAGTGAGCAAAATACCTCTATCACTCAGTATTATCTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGGTTTAGTGAGCAAAATACCTCTATCACTCAGTATTATCTTAT  400

seq1  AAAAATATTTACTAGGCTGTAAGTGTAGAACATTGTGCTACTAACAAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATTTACTAGGCTGTAAGTGTAGAACATTGTGCTACTAACAAGGC  450

seq1  AAATTCATTTTGAAACTCTAGTCCTGTTCCAGAAAACAATACTCAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AAATTCATTTTGAAACTCTAGTCCTGTTCCAGAAAACAATACTCA-GAAA  499

seq1  AGACAGTATTGTTAGCACACCACGGTGTGCATGTTTTGTTGTTCTGTTTG  550
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGACAGTATTGTTAGCACACCACGGTGTGCATG-TTTGTTGTTCTGTTTG  548

seq1  CCCATTGGCTCTGTGCCCTGTTTTGAACTTCCGATTTCATGAACTACTAG  600
      ||| ||||||||||| |||| ||||||||| |||||| ||| |||| |||
seq2  CCC-TTGGCTCTGTG-CCTG-TTTGAACTT-CGATTT-ATG-ACTA-TAG  591

seq1  AGTTAACAAACTATTTTATTATTCTGTGAACTTCTAAGATGTAAGTGTAG  650
      || ||||||| |||||||||||||   | | ||||||||||  | |||||
seq2  AG-TAACAAA-TATTTTATTATTC---GGAATTCTAAGATG--AATGTAG  634

seq1  ATGATATTGTAAAAGTATCATCACTTCTGAAAAAAATCTAACTAAAGTTC  700
       ||||||   ||||||| |||| ||   |||||||  |||||||||| ||
seq2  -TGATAT--GAAAAGTA-CATCCCT--CGAAAAAA--CTAACTAAAG-TC  675

seq1  TATCTTCCACTTAGGAACAGACTCCCCTCTGT  732
      |||||||   ||||||  |     ||||||||
seq2  TATCTTC--ATTAGGACGA----TCCCTCTGT  701


seq1: chr13_6010371_6011532
seq2: B6Ng01-039I20.g_67_1212 (reverse)

seq1  TCCAGAG-CCACAGGATG-AAAAAGAGAATGAATTTTTGCAAACTACCCT  48
      ||||||| ||||| |||| |||||||||||||    ||||||||||||||
seq2  TCCAGAGCCCACA-GATGAAAAAAGAGAATGA----TTGCAAACTACCCT  45

seq1  CAATAGGCATGCTGTGGCATGTTTGCACCTGTTTACACACAAATAAAATA  98
      ||| || |||    |||||   ||||||||| |||| |||      | ||
seq2  CAA-AGCCATATGCTGGCAATGTTGCACCTG-TTACCCAC------ATTA  87

seq1  AAGAAATGTAAAAAACTGTTATTTTCTCAGCTGAATATGTTTTCCAATGG  148
      |   ||||| ||||||||||||||| ||||||||||||| ||||||||| 
seq2  ATAGAATGT-AAAAACTGTTATTTTTTCAGCTGAATATG-TTTCCAATGA  135

seq1  GGCTTCAAATTTTCAACAATCTTCTAATGGACTTTTTATGAGAGTAATGG  198
      ||||||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  GGCTTCAAA-TTTCAACAATC-TCTAATGGACTTTTTATGAGAGTAATGG  183

seq1  TCAGAAAAACCTAGTGCCAGAAAAAACACATCAATTTTCACAAAGCATTC  248
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCAGAAAAACCTAGTGCCAGAAAAAACACATCAA-TTTCACAAAGCATTC  232

seq1  TGTCTTTATTTTTATTGATTAAGTTAGTGGTATAGACTTATGGGACATCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTATTTTTATTGATTAAGTTAGTGGTATAGACTTATGGGACATCA  282

seq1  CATAATATTATGGTACAGGTGTAATGACCAAACCGAGGCTACCAGCACAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATTATGGTACAGGTGTAATGACCAAACCGAGGCTACCAGCACAT  332

seq1  TTATCACATTTATCATTTGACATCTCCCATGATGAGAACATGTAAAAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACATTTATCATTTGACATCTCCCATGATGAGAACATGTAAAAAAT  382

seq1  ACAACATTGAAGCACAAAGTATACAACACTTGCTGCATTTATTACACACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATTGAAGCACAAAGTATACAACACTTGCTGCATTTATTACACACT  432

seq1  GTGTGACAGAACTCAAAAGCTCTAATATTCGCAGGATGGATAATAAATTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACAGAACTCAAAAGCTCTAATATTCGCAGGATGGATAATAAATTA  482

seq1  TAGGTGCTTTGTTGCAAGTAGAATTCAGAGCTAAATAAGCATAGTAAAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGCTTTGTTGCAAGTAGAATTCAGAGCTAAATAAGCATAGTAAAGG  532

seq1  AAGTCTTAACACAGTTTTGCTATGGTCTAGAAAACATGCATTTCTACTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTAACACAGTTTTGCTATGGTCTAGAAAACATGCATTTCTACTAC  582

seq1  CATCTCTCTTCCTAGAGAGCTAATCAGCCAGCCACATAGAGATAGAAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTCTTCCTAGAGAGCTAATCAGCCAGCCACATAGAGATAGAAAAT  632

seq1  AAATAGATGAATACAGAGAAATGGATACTTCTATATACAAATAAGTATAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATGAATACAGAGAAATGGATACTTCTATATACAAATAAGTATAT  682

seq1  GTAAAGAGACAGGTATACACAGATAACTGTATGTAAACAATTTTTTCTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAGACAGGTATACACAGATAACTGTATGTAAACAATTTTTTCTAA  732

seq1  AGGTGAGAGGCATGAAGGAATCAATATATGTGTTTATAAATAGGTATGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGAGGCATGAAGGAATCAATATATGTGTTTATAAATAGGTATGTA  782

seq1  CATATGCATACGCACACATGTGTGGCTATTGCACACGTGTGTATGCATAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCATACGCACACATGTGTGGCTATTGCACACGTGTGTATGCATAT  832

seq1  TATTCAATAACTATCTTTGCTAGATTGGAGTATTTGGTATGTTAAGATCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATAACTATCTTTGCTAGATTGGAGTATTTGGTATGTTAAGATCC  882

seq1  ATTGTTTTAGTTATATATGAATTTATGGAAGAGGAATTATCAGAGTCTAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTAGTTATATATGAATTTATGGAAGAGGAATTATCAGAGTCTAT  932

seq1  TAAATATCATTGGATAAAAGGGAAGAGGGGTTATAGGGGAATCAAACAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCATTGGATAAAAGGGAAGAGGGGTTATAGGGGAATCAAACAAA  982

seq1  AAAAGAGAGAGAGAGTATTTGCTTTTTCCAAAAGCAAATACTGAAGGTTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGAGAGAGTATTTGCTTTTTCCAAAAGCAAATACTGAAGGTTG  1032

seq1  ATGCTTGGTTCCTGCCTCATTTCATCTCCCATTTCTATCTGAAAGATTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTGGTTCCTGCCTCATTTCATCTCCCATTTCTATCTGAAAGATTTA  1082

seq1  CAGAATCCCTGAGATTTCAAAGTCGTGTTCTGCACTTGCAGTCTTTAAAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCCCTGAGATTTCAAAGTCGTGTTCTGCACTTGCAGTCTTTAAAG  1132

seq1  GAGAGAAAGAATTC  1162
      ||||||||||||||
seq2  GAGAGAAAGAATTC  1146


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