BAC Information

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BAC

Clone NameB6Ng01-040A24
Chromosome13 (Build37)
Map Location 100,208,895 - 100,345,855
singlet/doubletdoublet
Overlap geneMtap1b
Upstream geneLOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27
Downstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040A24.bB6Ng01-040A24.g
ACCDH867146DH867147
length1,081859
definitionDH867146|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A24, 5' end.DH867147|Mus musculus domesticus DNA, BAC clone: B6Ng01-040A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,208,895 - 100,209,987)(100,344,999 - 100,345,855)
sequence
gaattccaggcaagtattctaccattgagctataatcatctcccacccaa
attgtgacattttagagaaaccagattaagcaaacaaaactccagaaaca
agtcctacttgctggacccttctctttgactttaacctctagagtttttc
ttaatgctttctctctagagtaaagcatctatcttctaggctctaaataa
ccatactatgcaaatggattacaaatgggtatctctcaccagctcaaagt
ctcttagctctaggttcgaatatccacctgtttgataattccaaggtgtc
gaagaatggcaagttctgaaagcttggataccccccaatacctactgtga
cagggaacacacagggcctttgcattttatagataactaagaagaaaaca
gaagatactctaggctatgggtgggaatgatgctataggtgaactcaggg
ttaaagtcccttcttgaagatataatgcaacagaaagaaaagccttttcc
atggaaaggttggaaaacggtctcagaaatgtttgcttttctaatgttat
gttttgtttcaagggttggacaaagggaacaagactgaacagcaaatgac
ctcaaatgagtcattctgcaaaccttccgggtaaccacagctccaaacct
gagtatccatcggtctactctactgatttttaaacatttttattaactgt
gcccgcgtgtatgtctgtatagtacatggatccagtgcccttggaggcaa
gaagaagttgtggggtcccctgacactggagtcacagaaagttgtgaact
gccatggtggtgctgggaatcaaacccgggtctctggacgagtagctggt
tctcttaaccactgcaccacctctccagcccctagtctagtaattttcaa
tctactttagctgtagcaacctttcttcaatatttaggtaaaagaaatat
agctgagttcctcggtttggcaggggtagccacgaattctaccttcccca
cttcctgcaccacaccaacactgatctagtcttataaaactgtggcgagc
ctttcacgtgcactgagcatgcttctctgga
gaattcctccattgtcctacttggatctctctggacactttgatgtagtc
tggatttgtgatttctccctccctgcatccttccttccttccttccttcc
ttccttccttccttccttcctttctttctttctttctttctttctttctt
tctttctttctttctttctttctatctttctataagtgttagctctgcca
caaagtctttatttttctgctctcacctctacatctaactctgtcatagc
atctgcatccaggacaacaacccgcacacttgcagcatttctttctctac
tagcccaacatcactgccactccaaaaacaaaacacagggtttgccatgc
ctggagtgagacaaaggtcacttttatttctaagtcccttgctgcgctgg
aaatgagagcttctcttgttttatttttactggctaattaaagtccttgt
gcattttgtaacttatttgtaagagagggacaggaggcatacttgttagt
tattgggatggtgagatgagagaggaaaagggacctcactgctgatgtgg
gatttcccagggacacggagcattttcacctccccaggagtgctgggagc
tattcagctagaaagcaaagacttccctgcttgttcctgtctctcagacc
ctcactgacctgttgagctggctagatttttgtcaacttgacaagagctc
tttgaggagggaagttgagttgagggtttatctccatcagattgcctgta
gacaagtgtattagcattttcttcatggatgattgatgtgggagggccca
gcccactgtgggcggtgctatttcctcgaaggtggtcctgggaggtacaa
gaaaaggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100208895_100209987
seq2: B6Ng01-040A24.b_52_1132

seq1  GAATTCCAGGCAAGTATTCTACCATTGAGCTATAATCATCTCCCACCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGCAAGTATTCTACCATTGAGCTATAATCATCTCCCACCCAA  50

seq1  ATTGTGACATTTTAGAGAAACCAGATTAAGCAAACAAAACTCCAGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGACATTTTAGAGAAACCAGATTAAGCAAACAAAACTCCAGAAACA  100

seq1  AGTCCTACTTGCTGGACCCTTCTCTTTGACTTTAACCTCTAGAGTTTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTACTTGCTGGACCCTTCTCTTTGACTTTAACCTCTAGAGTTTTTC  150

seq1  TTAATGCTTTCTCTCTAGAGTAAAGCATCTATCTTCTAGGCTCTAAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTTTCTCTCTAGAGTAAAGCATCTATCTTCTAGGCTCTAAATAA  200

seq1  CCATACTATGCAAATGGATTACAAATGGGTATCTCTCACCAGCTCAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTATGCAAATGGATTACAAATGGGTATCTCTCACCAGCTCAAAGT  250

seq1  CTCTTAGCTCTAGGTTCGAATATCCACCTGTTTGATAATTCCAAGGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGCTCTAGGTTCGAATATCCACCTGTTTGATAATTCCAAGGTGTC  300

seq1  GAAGAATGGCAAGTTCTGAAAGCTTGGATACCCCCCAATACCTACTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGGCAAGTTCTGAAAGCTTGGATACCCCCCAATACCTACTGTGA  350

seq1  CAGGGAACACACAGGGCCTTTGCATTTTATAGATAACTAAGAAGAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAACACACAGGGCCTTTGCATTTTATAGATAACTAAGAAGAAAACA  400

seq1  GAAGATACTCTAGGCTATGGGTGGGAATGATGCTATAGGTGAACTCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATACTCTAGGCTATGGGTGGGAATGATGCTATAGGTGAACTCAGGG  450

seq1  TTAAAGTCCCTTCTTGAAGATATAATGCAACAGAAAGAAAAGCCTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGTCCCTTCTTGAAGATATAATGCAACAGAAAGAAAAGCCTTTTCC  500

seq1  ATGGAAAGGTTGGAAAACGGTCTCAGAAATGTTTGCTTTTCTAATGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGGTTGGAAAACGGTCTCAGAAATGTTTGCTTTTCTAATGTTAT  550

seq1  GTTTTGTTTCAAGGGTTGGACAAAGGGAACAAGACTGAACAGCAAATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTCAAGGGTTGGACAAAGGGAACAAGACTGAACAGCAAATGAC  600

seq1  CTCAAATGAGTCATTCTGCAAACCTTCCGGGTAACCACAGCTCCAAACCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATGAGTCATTCTGCAAACCTTCCGGGTAACCACAGCTCCAAACCT  650

seq1  GAGTATCCATCGGTCTACTCTACTGATTTTTAAACATTTTTATTAACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATCCATCGGTCTACTCTACTGATTTTTAAACATTTTTATTAACTGT  700

seq1  GCCCGCGTGTATGTCTGTATAGTACATGGATCCAGTGCCCTTGGAGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGCGTGTATGTCTGTATAGTACATGGATCCAGTGCCCTTGGAGGCAA  750

seq1  GAAGAAGTTGTGGGGTCCCCTGACACTGGAGTCACAGAAAGTTGTGAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTTGTGGGGTCCCCTGACACTGGAGTCACAGAAAGTTGTGAACT  800

seq1  GCCATGGTGGTGCTGGGAATCAAACCCGGGTCTCTGGACGAGTAGCTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTGGTGCTGGGAATCAAACCCGGGTCTCTGGACGAGTAGCTGGT  850

seq1  TCTCTTAACCACTGCACCACCTCTCCAGCCCCTAGTCTAGTAATTTTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAACCACTGCACCACCTCTCCAGCCCCTAGTCTAGTAATTTTCAA  900

seq1  TCTACTTTAGCTGTAGCAACCTTTCTTCAATATTTAGGTAAAAGAAATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTAGCTGTAGCAACCTTTCTTCAATATTTAGGTAAAAGAAATAT  950

seq1  AGGCTGAGTTCCTCGGTTTGGCAGGGGGTAGCCACGAATTCTACCTTCCC  1000
      | ||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  A-GCTGAGTTCCTCGGTTTGGCA-GGGGTAGCCACGAATTCTACCTTCCC  998

seq1  CACTTCCTGCCACCCCACCACCCCACCACCCTGATCTAGTCTATTAAAAC  1050
      |||||||||      |||||| |||  || ||||||||||||  ||||||
seq2  CACTTCCTG------CACCACACCA--ACACTGATCTAGTCTTATAAAAC  1040

seq1  TGTGGCGAGCCTTTCACGTGCACTGAGCATGGCTTCCTCTGGA  1093
      |||||||||||||||||||||||||||||| |||| |||||||
seq2  TGTGGCGAGCCTTTCACGTGCACTGAGCAT-GCTT-CTCTGGA  1081

seq1: chr13_100344999_100345855
seq2: B6Ng01-040A24.g_67_924 (reverse)

seq1  TCCTTTTCTTGTACCT-CCAGGACCACCTTCGAGGAAATAGCACCGCCCA  49
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCTTTTCTTGTACCTCCCAGGACCACCTTCGAGGAAATAGCACCGCCCA  50

seq1  CAGTGGGCTGGGCCCTCCCACATCAATCATCCATGAAGAAAATGCTAATA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGCTGGGCCCTCCCACATCAATCATCCATGAAGAAAATGCTAATA  100

seq1  CACTTGTCTACAGGCAATCTGATGGAGATAAACCCTCAACTCAACTTCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTCTACAGGCAATCTGATGGAGATAAACCCTCAACTCAACTTCCC  150

seq1  TCCTCAAAGAGCTCTTGTCAAGTTGACAAAAATCTAGCCAGCTCAACAGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAAGAGCTCTTGTCAAGTTGACAAAAATCTAGCCAGCTCAACAGG  200

seq1  TCAGTGAGGGTCTGAGAGACAGGAACAAGCAGGGAAGTCTTTGCTTTCTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAGGGTCTGAGAGACAGGAACAAGCAGGGAAGTCTTTGCTTTCTA  250

seq1  GCTGAATAGCTCCCAGCACTCCTGGGGAGGTGAAAATGCTCCGTGTCCCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATAGCTCCCAGCACTCCTGGGGAGGTGAAAATGCTCCGTGTCCCT  300

seq1  GGGAAATCCCACATCAGCAGTGAGGTCCCTTTTCCTCTCTCATCTCACCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATCCCACATCAGCAGTGAGGTCCCTTTTCCTCTCTCATCTCACCA  350

seq1  TCCCAATAACTAACAAGTATGCCTCCTGTCCCTCTCTTACAAATAAGTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATAACTAACAAGTATGCCTCCTGTCCCTCTCTTACAAATAAGTTA  400

seq1  CAAAATGCACAAGGACTTTAATTAGCCAGTAAAAATAAAACAAGAGAAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGCACAAGGACTTTAATTAGCCAGTAAAAATAAAACAAGAGAAGC  450

seq1  TCTCATTTCCAGCGCAGCAAGGGACTTAGAAATAAAAGTGACCTTTGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTCCAGCGCAGCAAGGGACTTAGAAATAAAAGTGACCTTTGTCT  500

seq1  CACTCCAGGCATGGCAAACCCTGTGTTTTGTTTTTGGAGTGGCAGTGATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGGCATGGCAAACCCTGTGTTTTGTTTTTGGAGTGGCAGTGATG  550

seq1  TTGGGCTAGTAGAGAAAGAAATGCTGCAAGTGTGCGGGTTGTTGTCCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTAGTAGAGAAAGAAATGCTGCAAGTGTGCGGGTTGTTGTCCTGG  600

seq1  ATGCAGATGCTATGACAGAGTTAGATGTAGAGGTGAGAGCAGAAAAATAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGATGCTATGACAGAGTTAGATGTAGAGGTGAGAGCAGAAAAATAA  650

seq1  AGACTTTGTGGCAGAGCTAACACTTATAGAAAGATAGAAAGAAAGAAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTTGTGGCAGAGCTAACACTTATAGAAAGATAGAAAGAAAGAAAGA  700

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAA  750

seq1  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATGCAGGGAGGGAGAAATCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATGCAGGGAGGGAGAAATCA  800

seq1  CAAATCCAGACTACATCAAAGTGTCCAGAGAGATCCAAGTAGGACAATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCAGACTACATCAAAGTGTCCAGAGAGATCCAAGTAGGACAATGG  850

seq1  AGGAATTC  857
      ||||||||
seq2  AGGAATTC  858