BAC Information

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BAC

Clone NameB6Ng01-040G02
Chromosome13 (Build37)
Map Location 90,861,940 - 90,862,780
singlet/doubletsinglet
Overlap genenone
Upstream geneVcan, LOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
Downstream geneEG435376, Rps23, Atg10, LOC100042959, Ssbp2, LOC666889
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040G02.bB6Ng01-040G02.g
ACCDH867369DH867370
length8441,163
definitionDH867369|Mus musculus domesticus DNA, BAC clone: B6Ng01-040G02, 5' end.DH867370|Mus musculus domesticus DNA, BAC clone: B6Ng01-040G02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctgagttgagataaaagggaagatgaggtaggaaccatacag
attaagcgtagggagcagtagttttgcagcttattaaaaagcagccttct
gggaatgttgttctgctgaaataaacacagccctgtgtgttttatggaaa
ataggatctttccctgagcagatgtcctccccagctgcttgcaagaatat
tggcttctcctccctttgcccttttaactgggggaaggcccttgggttgc
ctttgatgtctgattaggttttttcatcctgatgtatgttctgtaagaga
aattaatgatttgtgaatgaacaggaatcacacgctttttcagtcaatga
atcatatcaaagctgggtctgagaagcctgaaaccacatccgcaccgtat
tcctttattcttccctgtgtacgcctttatgaccaccatttttttccccc
gcaaaaggcatgtgttgctggggaagttggtgggcttaatgataaaaagc
ctggctcaaactttgcacaaactcagtctcagtttccttatttgtgtgcc
aggaatcacagtgaggattaattaacaggataggagagagattgagagat
aggagagagagttaacagcagggactctggaaactaaacgccaagattac
agtcttgactctaccaaccacttttcaagctgagcatcaccaagaagtca
cttgatcacccctgcttcctttttctcctctgtagattggtgacagtagt
atgtatctcacagggccgtggtattgaatgaatgaggttatatatgaaac
ctgggttcttaaaatggatttgttgtttatattatggcttttgc
gaattctcacctgaggattaccgaatggcagagaagcacctgaaataatc
acacccttaatcatcagggaaatgcaaatcaaaacaaccctgagattcca
cctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagat
gctggcatggatgtggagaaagaggaacactcctccattgttgcaagctt
gtacaaccactctggaaatcagtctggcagttcctcagaaaattggacat
agtactactggaggatccagcaatacctctcctgggcatatatctagaag
atgccccaactggtaagaaggacacatgctccactatgttcatagcagcc
ttatttataatagccagaagctggaaagaacccagatgcccctcaacaga
ggaatggatacagaaaatgtggtacatctacacaatggagtactactcag
ctattaaaaagaatgaatttatgaaattcctagccaaatggatggacctg
gagggcatcatcctgagtgaggtaacacattcacaaaggaactcacacaa
tatgtactcactgataagtggatattagccccaaacctaggatacccaag
atatgagatacaatttgctaaacacatgaaactcaagaaaaatgaagact
gaagtgtggacactatgcccctccttagaagtgggaacaaaacacccatg
gaaggagttacagagacaaagtttggagctgagatgaaaggatggaccat
gtagagactgccatatccagggatcaccccataatcagcatccaaacgct
gacaccattgcatacactagcaagattttatagaaaggacccagatgtag
cttgtctcttgtgagactatgccggggcctagcaaacacagaagtggatg
ctcacagtcagctaatggatggatcacagggctcccaatgggagagctag
agaagtaccaaggagctaaggggatctgcacccttaggtggaacaacatt
atggaactaaccatgtaccccggagctctgactctagctgcaattgtata
caaaagagggcctagtcggcatccctggaaagagaagtccattggaacat
gcaattttatatgccccaataaggggaacgcccaggccaaaaggtggaag
tgtggtggggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_90861940_90862780
seq2: B6Ng01-040G02.b_43_886 (reverse)

seq1  GCAAAAGCCATATTAAAAACAACAAATCCATTTTAAG-AGCCAGGTTTCA  49
      |||||||||||| || ||||||||||||||||||||| | ||||||||||
seq2  GCAAAAGCCATAATATAAACAACAAATCCATTTTAAGAACCCAGGTTTCA  50

seq1  TATATAACCTCATTCATTCAATACCACGGCCCTGTGAGATACATACTACT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAACCTCATTCATTCAATACCACGGCCCTGTGAGATACATACTACT  100

seq1  GTCACCAATCTACAGAGGAG-AAAAGGAAGCAGGGGTGATCAAGTGACTT  148
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTCACCAATCTACAGAGGAGAAAAAGGAAGCAGGGGTGATCAAGTGACTT  150

seq1  CTTGGTGATGCTCAGCTTG-AAAGTGGTTGGTAGAGTCAAGACTGTAATC  197
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTTGGTGATGCTCAGCTTGAAAAGTGGTTGGTAGAGTCAAGACTGTAATC  200

seq1  TTGGCGTTTAGTTTCCAGAGTCCCTGCTGTTAACTCTCTCTCCTATCTCT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCGTTTAGTTTCCAGAGTCCCTGCTGTTAACTCTCTCTCCTATCTCT  250

seq1  CAATCTCTCTCCTATCCTGTTAATTAATCCTCACTGTGATTCCTGGCACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTCTCTCCTATCCTGTTAATTAATCCTCACTGTGATTCCTGGCACA  300

seq1  CAAATAAGGAAACTGAGACTGAGTTTGTGCAAAGTTTGAGCCAGGCTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGGAAACTGAGACTGAGTTTGTGCAAAGTTTGAGCCAGGCTTTT  350

seq1  TATCATTAAGCCCACCAACTTCCCCAGCAACACATGCCTTTTGCGGGGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTAAGCCCACCAACTTCCCCAGCAACACATGCCTTTTGCGGGGGA  400

seq1  AAAAAATGGTGGTCATAAAGGCGTACACAGGGAAGAATAAAGGAATACGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATGGTGGTCATAAAGGCGTACACAGGGAAGAATAAAGGAATACGG  450

seq1  TGCGGATGTGGTTTCAGGCTTCTCAGACCCAGCTTTGATATGATTCATTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGATGTGGTTTCAGGCTTCTCAGACCCAGCTTTGATATGATTCATTG  500

seq1  ACTGAAAAAGCGTGTGATTCCTGTTCATTCACAAATCATTAATTTCTCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAAGCGTGTGATTCCTGTTCATTCACAAATCATTAATTTCTCTT  550

seq1  ACAGAACATACATCAGGATGAAAAAACCTAATCAGACATCAAAGGCAACC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACATACATCAGGATGAAAAAACCTAATCAGACATCAAAGGCAACC  600

seq1  CAAGGGCCTTCCCCCAGTTAAAAGGGCAAAGGGAGGAGAAGCCAATATTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGCCTTCCCCCAGTTAAAAGGGCAAAGGGAGGAGAAGCCAATATTC  650

seq1  TTGCAAGCAGCTGGGGAGGACATCTGCTCAGGGAAAGATCCTATTTTCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGCAGCTGGGGAGGACATCTGCTCAGGGAAAGATCCTATTTTCCA  700

seq1  TAAAACACACAGGGCTGTGTTTATTTCAGCAGAACAACATTCCCAGAAGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACACAGGGCTGTGTTTATTTCAGCAGAACAACATTCCCAGAAGG  750

seq1  CTGCTTTTTAATAAGCTGCAAAACTACTGCTCCCTACGCTTAATCTGTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTTAATAAGCTGCAAAACTACTGCTCCCTACGCTTAATCTGTAT  800

seq1  GGTTCCTACCTCATCTTCCCTTTTATCTCAACTCAGAAGAATTC  841
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTACCTCATCTTCCCTTTTATCTCAACTCAGAAGAATTC  844