BAC Information

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BAC

Clone NameB6Ng01-040I12
Chromosome10 (Build37)13 (Build37)
Map Location 82,404,480 - 82,404,839109,419,521 - 109,420,974
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133, LOC100042712, B230315N10Rik, LOC100042718, EG237412, LOC666611, Gm1553, LOC544716, 1190007I07Rik, Tdg, Glt8d2, Hcfc2, Nfyb, 1700028I16Rik, Txnrd1, Eid3
Downstream geneEG216185, Chst11, Slc41a2, D10Wsu102e, LOC666748, Aldh1l2, A230046K03Rik, Appl2, 1500009L16Rik, LOC100041225
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040I12.bB6Ng01-040I12.g
ACCDH867466DH867467
length9811,117
definitionDH867466|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I12, 5' end.DH867467|Mus musculus domesticus DNA, BAC clone: B6Ng01-040I12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,404,480 - 82,404,839)(109,419,521 - 109,420,974)
sequence
gaattcacgcagttgaatccttctcaacagtctgttttacgggaacactt
cattaccaccgttccccagctgaagagttctgaatccaggctggatcctt
ctcaacagtctgttttacgggaacacttcattactatgacccgcagttct
ggttccggaatgagggatcttccttgcgccagtgatggtaaccgtccagg
gttttctcatcccaggatttctcgtcccgggttttcttgtcccaggtctt
ctagtcccgggttttctcgtcccgggtttcggcaccaactcttacacgca
ttcgcgaccggccaggaaagatgcaacaaaccagaatcttctgcggcaaa
agctttattgcttacatcttcaggagccagagagcaagagagcaagagcc
agagcaagagagagaaaaagaacaagaacaagaaagcaagagagagaaag
caagagagagaaaaagcaagaacaagagagagagagagagaatggcaaaa
ccccgtcccttttaaggagaattatcctccgcctaggacgtattactccc
tgattggctgcagcccatcggctcagttgtcatcacaagaaaggcagaac
acatggcgggaaaactgcccctgcacgtgtgcagattatgtttaccactt
agaacacagctgtcagcgccatcttataatggcaaatgtgagggcggctc
ccaacaccccttccttctcttttcccagttctctccccaaactccatcta
cttcacctccatttcccgtctgaaaagggccagcctagatggacatcagc
cagccatggcacatcaagttacagtaagactaggcacaccctctcctatt
aaggctagaaaaggcagcccagtagagggaaagggtcccaaagtcaggta
acagagtcagagacagctcctgctctcgctgttagaagatcaagctccca
gaagacgatcaagctgcacagctgtaacatg
gaattcaaaatgagtggacctgcccagtcccacatggttgacagaggaac
tgagagacaatgtctggtcttctgtttagtggttgaatcagttttccttt
acaacaaagtgtttctcctttttcagtagcattaacaagtgataaatgta
agaaaaaaaaacccactaacaaacagttggactactaaccatttttctac
ttcagtcagtattccagtattagctgtctctttgatttcaataatagtaa
ggagtaataaatagaaataaaaaaaaaccgaacacatgtaatattaaagc
aatgatatataaggaaataacataattattaagactctttggcaggtaag
ttttaatcacgttatataaattaacctgtatcgtactacaataacccacc
gaggttatattattatctccattttacgagtgaagaaccttgggcacaga
gaagtaagaatcttaaagaataagctgtggaagtcatgatactagtcaac
taaaatcaactcttgacatagatcttcctgcctccattccgcctgctccc
cgcccccacccctgcaaaatcacactaagtagactatagaaagtaaaatt
gctattcaaaagtaataggaccatcaggcatgagattaaaccttattttt
tgggcaacataaaattaaaatatgtgctaattaaaacagaaataaaaatg
agcaacaccaacaacaaaagcttggaaagaaaattcttatacaatgacta
gagtaaatctaaaaggctttttaagtatccaatttcacacaaatcttcta
aatggagggcagcattctttagtgtgccaaccaagtcatgcttatctata
attagaaattactcttatctagccattagaacaatccctctcctaagcaa
cgctggttcatctgttttcaagtatgaaactttttaagtgggagagacac
tcctatattcttttttttctcaaattttatagatattttcttcattacat
tcaaatgctaacccgaaagtccctataccctcccggtgccctgctcccta
ccaccaactccctactttggcctgcgtccctgtgctggcaataaagttgc
aatcaagggcctcctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_82404480_82404839
seq2: B6Ng01-040I12.b_140_580 (reverse)

seq1  CCTAGGCGGAGGATAATTCTCCTTAAAAGGGACGGGGTTTTGCCATTCTT  50
      |||||||||||||||||||||||||||||||||||||||||||||     
seq2  CCTAGGCGGAGGATAATTCTCCTTAAAAGGGACGGGGTTTTGCCA-----  45

seq1  TTTCTCTCTCTTGTTCTTGCTTTCTCGCTCTCTCTCTCTTGTTCTTG--T  98
                           ||||| ||||||||||||||||||||  |
seq2  ---------------------TTCTCTCTCTCTCTCTCTTGTTCTTGCTT  74

seq1  TTTCTCTCTCTTGCTTTCTTGTTCTCTCTCTTGCTTTCTTGTTCTTGTTC  148
      |||||||||||||||      |||||||||||||||||||||||||||||
seq2  TTTCTCTCTCTTGCT------TTCTCTCTCTTGCTTTCTTGTTCTTGTTC  118

seq1  TTTTTCTTGCTTTCTTGCTCTCTCTTGCTCTTGCTCTCTTGCACTATTGC  198
      |||||            |||||||||||||| ||||          ||||
seq2  TTTTT------------CTCTCTCTTGCTCTGGCTC----------TTGC  146

seq1  TCTCTTGCTCTCTGGCTCCTGAAAATGTAAGCAATAAAGC-TTTGCCGCA  247
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  TCTCTTGCTCTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTTGCCGCA  196

seq1  GAAGATTCCGGTTTGTTGCGTCTTTCCTGGCCTGTCGCGAGAACACGTGT  297
      |||||||| |||||||||| |||||||||||| |||||  |||  |||||
seq2  GAAGATTCTGGTTTGTTGCATCTTTCCTGGCCGGTCGC--GAATGCGTGT  244

seq1  AAGAGGCAATTAC--AACCAGG---------AGCCTCG--TAGAA-TCTT  333
      |||||    |  |  |||| ||         | ||  |  |||||  | |
seq2  AAGAGTTGGTGCCGAAACCCGGGACGAGAAAACCCGGGACTAGAAGACCT  294

seq1  AAGA-TGGCAAAC--------AGA----CT--GTTGAGAAGG--------  360
        ||   | ||||        |||    ||  | ||||||          
seq2  GGGACAAGAAAACCCGGGACGAGAAATCCTGGGATGAGAAAACCCTGGAC  344

seq1  --------------------------------------------------  360
                                                        
seq2  GGTTACCATCACTGGCGCAAGGAAGATCCCTCATTCCGGAACCAGAACTG  394

seq1  -----------------------------------------------  360
                                                     
seq2  CGGGTCATAGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAGAAGG  441

seq1: chr13_109419521_109420974
seq2: B6Ng01-040I12.g_68_1184 (reverse)

seq1  GGAGGAGGCAAGCAGCAGGAAGCTGCCTCAAGGCTTTCATTGGGAGAATC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTAGCTGCTGTCCTGTTAATTTGGACCAATTAGCTGCCTCTTATGAGGCT  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATGCCAGTGTATGGCAAATACAGAAGTGGATGCTCATTGTCATCTATTGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  ATGGATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGAAGGGGTCTGCAACCATATAGGTGGAACAACAATATGAACTAACCAGT  250
                                                        
seq2  --------------------------------------------------  0

seq1  ACCCCCAGAGCTCGTGTCTCTAGCTGCATATGTATCACAAGATGGCCTAG  300
                                                        
seq2  --------------------------------------------------  0

seq1  TCGGCCATCTCTGGGAGGAGAGGCCCCTTGGTATTGCAAACTTTATATGC  350
                   ||||||   | ||||||  ||||| |||||||| || 
seq2  -------------GGAGGA---GGCCCTTG--ATTGC-AACTTTAT-TG-  29

seq1  CCCAGCACAGGGGAACGCCAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGG  400
       |||||||||||  ||| |||| | ||| |  |||||| ||| |||| ||
seq2  -CCAGCACAGGG--ACG-CAGGCCAAAGTA--GGGAGTTGGT-GGTA-GG  71

seq1  GAGCAGGGCACGGGGAGGGTATAGGGGACTTTCGGGATAGCATTTGAAAT  450
      ||||||||||| ||||||||||| |||||||||||| ||||||||| |||
seq2  GAGCAGGGCACCGGGAGGGTATA-GGGACTTTCGGGTTAGCATTTG-AAT  119

seq1  GTAAATGAAGAAAATATCTAATAAAAATTTGAGAAAAAAAAAGAAATATA  500
      || |||||||||||||||||   ||||||||||||||||||   ||||||
seq2  GT-AATGAAGAAAATATCTA--TAAAATTTGAGAAAAAAAA--GAATATA  164

seq1  GGAGTGTCTCTCCCACTTAAAAAGTTTCATTACTTGAAAACAGATGAACC  550
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGAGTGTCTCTCCCACTTAAAAAGTTTCA-TACTTGAAAACAGATGAACC  213

seq1  AAGCGTTGCTTAGGAGAGGGATTGTTCTAATGGCTAGATAAGAGTAATTT  600
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AGCGTTGCTTAGGAGAGGGATTGTTCTAATGGCTAGATAAGAGTAATTT  262

seq1  CTAATTATAGATAAGCATGACTTGGTTGGCACACTAAAGAATGCTGCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATAGATAAGCATGACTTGGTTGGCACACTAAAGAATGCTGCCCT  312

seq1  CCATTTAGAAGATTTGTGTGAAATTGGATACTTAAAAAGCC-TTTAGATT  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCATTTAGAAGATTTGTGTGAAATTGGATACTTAAAAAGCCTTTTAGATT  362

seq1  TACTCTAGTCATTGTATAAGAATTTTCTTTCCAAGCTTTTGTTGTTGGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTAGTCATTGTATAAGAATTTTCTTTCCAAGCTTTTGTTGTTGGTG  412

seq1  TTGCTCATTTTTATTTCTGTTTTAATTAGCACATATTTTAATTTTATGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATTTTTATTTCTGTTTTAATTAGCACATATTTTAATTTTATGTT  462

seq1  GCCCAAAAAATAAGGTTTAATCTCATGCCTGATGGTCCTATTACTTTTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAAAATAAGGTTTAATCTCATGCCTGATGGTCCTATTACTTTTGA  512

seq1  ATAGCAATTTTACTTTCTATAGTCTACTTAGTGTGATTTTGCAGGGGTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAATTTTACTTTCTATAGTCTACTTAGTGTGATTTTGCAGGGGTGG  562

seq1  GGGCGGGGAGCAGGCGGAATGGAGGCAGGAAGATCTATGTCAAGAGTTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGGGAGCAGGCGGAATGGAGGCAGGAAGATCTATGTCAAGAGTTGA  612

seq1  TTTTAGTTGACTAGTATCATGACTTCCACAGCTTATTCTTTAAGATTCTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTGACTAGTATCATGACTTCCACAGCTTATTCTTTAAGATTCTT  662

seq1  ACTTCTCTGTGCCCAAGGTTCTTCACTCGTAAAATGGAGATAATAATATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCTGTGCCCAAGGTTCTTCACTCGTAAAATGGAGATAATAATATA  712

seq1  ACCTCGGTGGGTTATTGTAGTACGATACAGGTTAATTTATATAACGTGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCGGTGGGTTATTGTAGTACGATACAGGTTAATTTATATAACGTGAT  762

seq1  TAAAACTTACCTGCCAAAGAGTCTTAATAATTATGTTATTTCCTTATATA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTACCTGCCAAAGAGTCTTAATAATTATGTTATTTCCTTATATA  812

seq1  TCATTGCTTTAATATTACATGTGTTCGGTTTTTTTTTATTTCTATTTATT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGCTTTAATATTACATGTGTTCGGTTTTTTTTTATTTCTATTTATT  862

seq1  ACTCCTTACTATTATTGAAATCAAAGAGACAGCTAATACTGGAATACTGA  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTACTATTATTGAAATCAAAGAGACAGCTAATACTGGAATACTGA  912

seq1  CTGAAGTAGAAAAATGGTTAGTAGTCCAACTGTTTGTTAGTGGGTTTTTT  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTAGAAAAATGGTTAGTAGTCCAACTGTTTGTTAGTGGGTTTTTT  962

seq1  TTTCTTACATTTATCACTTGTTAATGCTACTGAAAAAGGAGAAACACTTT  1349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTACATTTATCACTTGTTAATGCTACTGAAAAAGGAGAAACACTTT  1012

seq1  GTTGTAAAGGAAAACTGATTCAACCACTAAACAGAAGACCAGACATTGTC  1399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAAAGGAAAACTGATTCAACCACTAAACAGAAGACCAGACATTGTC  1062

seq1  TCTCAGTTCCTCTGTCAACCATGTGGGACTGGGCAGGTCCACTCATTTTG  1449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTTCCTCTGTCAACCATGTGGGACTGGGCAGGTCCACTCATTTTG  1112

seq1  AATTC  1454
      |||||
seq2  AATTC  1117