BAC Information

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BAC

Clone NameB6Ng01-041F12
Chromosome13 (Build37)
Map Location 80,707,613 - 80,835,919
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98, Lysmd3, Polr3g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041F12.bB6Ng01-041F12.g
ACCDH868033DH868034
length1,074904
definitionDH868033|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F12, 5' end.DH868034|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,834,841 - 80,835,919)(80,707,613 - 80,708,511)
sequence
cttccatgaagacaacttttaagtagttcattccagaaccatccatgtga
agcacttgccacagagcacagtggtagctgctgtgacaggcagaggctga
gagcctgttttctgtcactgtcagttggggaactatcattgtgccatgct
gtgaatgattttgtaatcacaaaagaatattgtgtttggctaaatggttg
taagaagacacaccacacccacaaaaaaaaaaagatttttttctgagatt
attgtttaaaattatttatcctattactatattatattgtattaatttcc
atattttgaatttattttgtgttccttaaataagccctttaactcacagt
gtgtagtactttacataaatttctagatttggcatcatggtgttctgttg
aagacttttgtgctgatattcatgaaaagatctgcctagtaattttctga
actttaatgtcttcctgttttaatactaggtagttctaacatcatataat
gaactgagacatatagtagtttttcttagctgtgaaacaaataactgaaa
aagtcaacttaaagaagaaaggattatcttgtttcatggtttagtaagtt
tcagcccactgtctcctttctccattgttttgacacctgtgatggagcag
aactgcacactgcagagtggtcagaaaagagggaggagcatagagagagg
aaacaggaagagtcagggtcaagagatacacttcatactctgcccatagg
gattccctgttccaccttctagtttctcttaaggtaatatcaaaatgtga
atgcattaattcatggataattggttcaccactgtaggattgaccaatgg
tccatacaatccattaattaggccatcacctcccatgatccagtaactgc
tcagtgacaggttattttccaccagtaaaatgagccaatttaaaccagat
tagattacattaaagacaggtttatgggaagtgctctatggagatgagtt
cactggcctcaagaaccagtcagggaattatctatgaaaagaagtggagg
gggagggagaacgagaaagaaggg
gaattctcctccaataaccatgacttcattagcattcagtagttatctag
atttttaaaacagacaaattgttccctattgttgagcaattttaagtcca
tttagggagtcttggttacaagtaaggtatacatatgactattgtaccct
tcgggttatgttgattgttgatgtggttcatacatgttgtagttgggcag
gatataagagatcttataggagaatatggaatttctttaggaaagaaggg
aacaggtggataaattacagtaaggatgtctgaagacaccactatatatt
acattattaactatttacaatgaaaagaaaataaaaaaaccagaaaagca
aataaaacaaaacaaaacccaagtaaaaaatactgtagaatctcaacatg
ttggggccttcagtgcaattcaggatttgtatttacagcctcacattctg
gcctctctgagtctccatgcagggtctgttttgctaaattcctggcctta
gcatctttcgttagctattgagaaattctgatggctagtatatggtatat
ggttggcccaaagagtggcactattaggaggccttgttgtagcagttgtc
actgtggctatagactttaagacccttttgtagctgcccgggagccagtc
tgcttttggatgaggatgccctacatttgtctggatgctaccatgatctt
tgtcttgatgataatggactgaacctctgaacctgtaagcatccccaatt
aaatgtcatcctgacagagtaccttggccactagtggtttctgttcatag
cagtaaaactcttaagacatgaaatattttctatcctctgccccaatctc
accacctactgttgcagctatacctgcaaagaagatcacttgcacaatcc
ccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_80834841_80835919
seq2: B6Ng01-041F12.b_55_1128 (reverse)

seq1  CCCTTCTCTCTTCGTCTCCCTCCCCCTCCACTTCTTTTCATGGATATTTC  50
      ||||||| |||   ||||||||||||||||||||||||||| |||| |||
seq2  CCCTTCTTTCTCGTTCTCCCTCCCCCTCCACTTCTTTTCATAGATAATTC  50

seq1  CCTGACCTTGGTTCTTGGTGCCAGTGAACTCATCCTCCATAGAGCAACTT  100
      ||||||  |||||||||  |||||||||||||| ||||||||||| ||||
seq2  CCTGAC--TGGTTCTTGAGGCCAGTGAACTCAT-CTCCATAGAGC-ACTT  96

seq1  CCCAATAAACCTGTCTTTAATGTAATCTAATCTGGTTTAAATTGGCTCAT  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCC-ATAAACCTGTCTTTAATGTAATCTAATCTGGTTTAAATTGGCTCAT  145

seq1  TTTACTGGTGGAAAATAACCTGTCACTGAGCAGTTACTGGATCATGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGGTGGAAAATAACCTGTCACTGAGCAGTTACTGGATCATGGGAG  195

seq1  GTGATGGCCTAATTAATGGATTGTATGGACCATTGGTCAATCCTACAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGCCTAATTAATGGATTGTATGGACCATTGGTCAATCCTACAGTG  245

seq1  GTGAACCAATTATCCATGAATTAATGCATTCACATTTTGATATTACCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCAATTATCCATGAATTAATGCATTCACATTTTGATATTACCTTA  295

seq1  AGAGAAACTAGAAGGTGGAACAGGGAATCCCTATGGGCAGAGTATGAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACTAGAAGGTGGAACAGGGAATCCCTATGGGCAGAGTATGAAGT  345

seq1  GTATCTCTTGACCCTGACTCTTCCTGTTTCCTCTCTCTATGCTCCTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCTTGACCCTGACTCTTCCTGTTTCCTCTCTCTATGCTCCTCCCT  395

seq1  CTTTTCTGACCACTCTGCAGTGTGCAGTTCTGCTCCATCACAGGTGTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGACCACTCTGCAGTGTGCAGTTCTGCTCCATCACAGGTGTCAA  445

seq1  AACAATGGAGAAAGGAGACAGTGGGCTGAAACTTACTAAACCATGAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGAGAAAGGAGACAGTGGGCTGAAACTTACTAAACCATGAAACA  495

seq1  AGATAATCCTTTCTTCTTTAAGTTGACTTTTTCAGTTATTTGTTTCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATCCTTTCTTCTTTAAGTTGACTTTTTCAGTTATTTGTTTCACAG  545

seq1  CTAAGAAAAACTACTATATGTCTCAGTTCATTATATGATGTTAGAACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAAAACTACTATATGTCTCAGTTCATTATATGATGTTAGAACTAC  595

seq1  CTAGTATTAAAACAGGAAGACATTAAAGTTCAGAAAATTACTAGGCAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATTAAAACAGGAAGACATTAAAGTTCAGAAAATTACTAGGCAGAT  645

seq1  CTTTTCATGAATATCAGCACAAAAGTCTTCAACAGAACACCATGATGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATGAATATCAGCACAAAAGTCTTCAACAGAACACCATGATGCCA  695

seq1  AATCTAGAAATTTATGTAAAGTACTACACACTGTGAGTTAAAGGGCTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGAAATTTATGTAAAGTACTACACACTGTGAGTTAAAGGGCTTAT  745

seq1  TTAAGGAACACAAAATAAATTCAAAATATGGAAATTAATACAATATAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGAACACAAAATAAATTCAAAATATGGAAATTAATACAATATAATA  795

seq1  TAGTAATAGGATAAATAATTTTAAACAATAATCTCAGAAAAAAATCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAATAGGATAAATAATTTTAAACAATAATCTCAGAAAAAAATCTTTT  845

seq1  TTTTTTTGTGGGTGTGGTGTGTCTTCTTACAACCATTTAGCCAAACACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTGGGTGTGGTGTGTCTTCTTACAACCATTTAGCCAAACACAA  895

seq1  TATTCTTTTGTGATTACAAAATCATTCACAGCATGGCACAATGATAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTGTGATTACAAAATCATTCACAGCATGGCACAATGATAGTTC  945

seq1  CCCAACTGACAGTGACAGAAAACAGGCTCTCAGCCTCTGCCTGTCACAGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTGACAGTGACAGAAAACAGGCTCTCAGCCTCTGCCTGTCACAGC  995

seq1  AGCTACCACTGTGCTCTGTGGCAAGTGCTTCACATGGATGGTTCTGGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCACTGTGCTCTGTGGCAAGTGCTTCACATGGATGGTTCTGGAAT  1045

seq1  GAACTACTTAAAAGTTGTCTTCATGGAAG  1079
      |||||||||||||||||||||||||||||
seq2  GAACTACTTAAAAGTTGTCTTCATGGAAG  1074

seq1: chr13_80707613_80708511
seq2: B6Ng01-041F12.g_71_973

seq1  GAATTCTCCTCCAATAACCATGACTTCATTAGCATTCAGTAGTTATCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCAATAACCATGACTTCATTAGCATTCAGTAGTTATCTAG  50

seq1  ATTTTTAAAACAGACAAATTGTTCCCTATTGTTGAGCAATTTTAAGTCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAACAGACAAATTGTTCCCTATTGTTGAGCAATTTTAAGTCCA  100

seq1  TTTAGGGAGTCTTGGTTACAAGTAAGGTATACATATGACTATTGTACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGAGTCTTGGTTACAAGTAAGGTATACATATGACTATTGTACCCT  150

seq1  TCGGGTTATGTTGATTGTTGATGTGGTTCATACATGTTGTAGTTGGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGTTATGTTGATTGTTGATGTGGTTCATACATGTTGTAGTTGGGCAG  200

seq1  GATATAAGAGATCTTATAGGAGAATATGGAATTTCTTTAGGAAAGAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAAGAGATCTTATAGGAGAATATGGAATTTCTTTAGGAAAGAAGGG  250

seq1  AACAGGTGGATAAATTACAGTAAGGATGTCTGAAGACACCACTATATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTGGATAAATTACAGTAAGGATGTCTGAAGACACCACTATATATT  300

seq1  ACATTATTAACTATTTACAATGAAAAGAAAATAAAAAAACCAGAAAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATTAACTATTTACAATGAAAAGAAAATAAAAAAACCAGAAAAGCA  350

seq1  AATAAAACAAAACAAAACCCAAGTAAAAAATACTGTAGAATCTCAACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACAAAACAAAACCCAAGTAAAAAATACTGTAGAATCTCAACATG  400

seq1  TTGGGGCCTTCAGTGCAATTCAGGATTTGTATTTACAGCCTCACATTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCCTTCAGTGCAATTCAGGATTTGTATTTACAGCCTCACATTCTG  450

seq1  GCCTCTCTGAGTCTCCATGCAGGGTCTGTTTTGCTAAATTCCTGGCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTGAGTCTCCATGCAGGGTCTGTTTTGCTAAATTCCTGGCCTTA  500

seq1  GCATCTTTCGTTAGCTATTGAGAAATTCTGATGGCTAGTATATGGTATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTCGTTAGCTATTGAGAAATTCTGATGGCTAGTATATGGTATAT  550

seq1  GGTTGGCCCAAAGAGTGGCACTATTAGGAGGCCTTGTTGTAGCAGTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCCCAAAGAGTGGCACTATTAGGAGGCCTTGTTGTAGCAGTTGTC  600

seq1  ACTGTGGCTATAGACTTTAAGACCCTTTTGTAGCTGCCCGGGAGCCAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCTATAGACTTTAAGACCCTTTTGTAGCTGCCCGGGAGCCAGTC  650

seq1  TGCTTTTGGATGAGGATGCCCTACATTTGTCTGGATGCTACCATGATC-T  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCTTTTGGATGAGGATGCCCTACATTTGTCTGGATGCTACCATGATCTT  700

seq1  TGTCTTGATGATAATGGACTGAACCTCTGAACCTGTAAGCCATCCCCAAT  749
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGTCTTGATGATAATGGACTGAACCTCTGAACCTGTAAG-CATCCCCAAT  749

seq1  TAAATGTCATCCTGACAAGAGTACCTTGGCCACTAGTGGTTTCTGTTCAT  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAATGTCATCCTGAC-AGAGTACCTTGGCCACTAGTGGTTTCTGTTCAT  798

seq1  AGCAGTAAAAC-CCTAAGACATG-AATATTTCCTA-CCTCTGCCCCAATC  846
      ||||||||||| | ||||||||| ||||||| ||| ||||||||||||||
seq2  AGCAGTAAAACTCTTAAGACATGAAATATTTTCTATCCTCTGCCCCAATC  848

seq1  TCACCACCTACTGTTGCAGCTATACCTGCAAAGAGGATCAC-TGCACAGC  895
      |||||||||||||||||||||||||||||||||| |||||| ||||||  
seq2  TCACCACCTACTGTTGCAGCTATACCTGCAAAGAAGATCACTTGCACAAT  898

seq1  CCCC-  899
      |||| 
seq2  CCCCC  903