BAC Information

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BAC

Clone NameB6Ng01-041F22
Chromosome13 (Build37)
Map Location 76,371,409 - 76,503,111
singlet/doubletdoublet
Overlap geneGm276
Upstream geneLOC672443, LOC666764, LOC100042606, LOC100042986, Ell2, LOC666786, Glrx, Rhobtb3, LOC666553, LOC622313, Spata9, Rfesd, LOC100043008, Gpr150, Arsk, AK129128
Downstream geneMctp1, LOC666603, EG666607, Ankrd32, 2210408I21Rik, LOC631139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041F22.bB6Ng01-041F22.g
ACCDH868053DH868054
length1,0741,111
definitionDH868053|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F22, 5' end.DH868054|Mus musculus domesticus DNA, BAC clone: B6Ng01-041F22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,502,082 - 76,503,111)(76,371,409 - 76,372,519)
sequence
gaattcttcaagccaatggtcccaagaaacaagctggcgtagccattcta
atagcaaataaaatcaactttcaatcaaaagatatcaaaaaagataagaa
aggacacttcctacgaatcaaaggaaaaatcaaccaagaagaactctcaa
ttctgaacatctatgctacaaatgcaagggtacccacattcataaaagaa
actttactaaagcttgtttcaacccataggacagtcaaacagggacttgg
gcacctagaagaaaatgggggaacaagaaacacaaagaatggacagcaag
acaggaggtcctgatcaagctgacaaatttttattttcccccccacaggt
tatatactcatagaagcaggaatgagggtggagggggttgctttgtctct
gggtaatgcacctgtttccaggaacaggatattgacaggataaacagttc
agcaggaaaatcagaacagactgggctagtaggcacctatccacaagatt
tattgctatttgttcaccgctgacttcaggatctacgtctatttgtactc
agctgagctagtactttcccacagaggccaagactttatgtcagcaagca
cttaaggcagttaatgttcaaacaaggtcgctcccaagaaaagctcaaag
cacacattgcacctcacacaataatagtgggagacttcaacaccccactc
tcatcaatggacagatcatagaaacacaaactaaatagagacacattgaa
actaaccaaagttatgaaccaaatgcatctaacagatatttataggacat
ttcatcctaaagccaaaaaatatacctccttttcagcacctcatggtacc
ttctgcaaatctgaccataacaggcctcacagatgcaagaagtatgaaat
aatcctgtatatcctatcagatcaccaaggactaagtctggtcttcataa
caacaaaaacaataaaagcccacatacatggaagctgaacaccctctact
catgatgactaaggaagaaataagaagaattaagattttcagaattattg
aaaagatgcaaatatgccaaaact
gaattcagaagagatgtggagaattgagaaagcatggtatttcccaggtg
ctatgggacagagagggaagagcaagatataaggaatgctaagatcatgg
tagccaggtttctttgtgctatatttcttggacatagtggtcatttaaac
aagaaagggaaccctgagactggtggcagtcatccaaacattagttcaat
cctctttattattttctccttctgtacgggagaagtaaattgggaaaggt
aaagcccagattcagaaagggattacaaaaaaaaaaaaacaaacaaaaaa
caaaacccaaaaaacaacaacaacaacaacaacaacaacaacaaaaacag
tgaaagcagtgagtgcaaagaggaagaggaagcataattaaaccaaaatt
attctaaagcatatccaaagataatctttggtaatcatctgtgttcagta
aaattttacactgatatattttcatgtaaattggtaataaattaaaatta
cactataggaagtttgagagttttgcattatcagccggtaaacaaaggaa
acagcaatattaatattcatgggctagtgagatgactcagagggtaaagg
tgattggcaccaagcctgatgaccttacttgaaccctgggacccacacgt
tagaaggagataatcaacacccccaagtcctcctatgattgccaaacagg
cttccatgaataaatctaataacttaacattttaaatttaaataatataa
attatgttcgaattagtgttcacatgtattccttatgaacactctataag
ttacacctcctggaacgtccccaggaatgattggctactttatttcctgt
ccaggctcaaatttctggattaggttttatttcttgccagtgttttcatt
atacaaaattctttggcattcacttaacaaaattaagaatcatctattta
cttacttgaattctaagaggttcatttcatgctgataatctcctcggacc
attctttaaattgaggtggggctccgatgcagaggcctcttatctttcta
aaagctgcattacctaatggaagtaatatgtttgtaggggagatcaaaaa
ctcaggcagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_76502082_76503111
seq2: B6Ng01-041F22.b_101_1115 (reverse)

seq1  AGTTTTGGCATATTGTGCCTTCTTTTTCATTAAATTCTGAAAAATCTTTA  50
      |||||||||||||| ||| |   |||||| | ||||||| ||||||||  
seq2  AGTTTTGGCATATT-TGCAT--CTTTTCAAT-AATTCTG-AAAATCTT--  43

seq1  ATTTCTTTCTTTATTTCTTCCTTAGTCATCATTGAGTAGAGTGTTGTTCA  100
      | |||||   ||||||||||||||||||||| ||||||||| | ||||||
seq2  AATTCTT--CTTATTTCTTCCTTAGTCATCA-TGAGTAGAG-GGTGTTCA  89

seq1  GCTTCCATGTATGTGGGCTTTCTATTGTTTTTGTTGTTATTGAAGACCAG  150
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  GCTTCCATGTATGTGGGCTTT-TATTGTTTTTGTTGTTA-TGAAGACCAG  137

seq1  ACTTAGTCCTTGGTGATCTGATAGGATATACAGGATTATTTCATACTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGTCCTTGGTGATCTGATAGGATATACAGGATTATTTCATACTTCT  187

seq1  TGCATCTGTTGAGGCCTGTTATGGTCAGATTTGCAGAAGGTACCATGAGG  250
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTG-TGAGGCCTGTTATGGTCAGATTTGCAGAAGGTACCATGAGG  236

seq1  TGCTGAAAAGGAGGTATATTTTTTTGGCTTTAGGATGAAATGTCCTATAA  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCTGAAAAGGAGGTATA-TTTTTTGGCTTTAGGATGAAATGTCCTATAA  285

seq1  ATATCTGTTAGATGCATTTGGTTCATAACTTTGGTTAGTTTCAATGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTTAGATGCATTTGGTTCATAACTTTGGTTAGTTTCAATGTGTC  335

seq1  TCTATTTAGTTTGTGTTTCTATGATCTGTCCATTGATGAGAGTGGGGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTAGTTTGTGTTTCTATGATCTGTCCATTGATGAGAGTGGGGTGT  385

seq1  TGAAGTCTCCCACTATTATTGTGTGAGGTGCAATGTGTGCTTTGAGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTCCCACTATTATTGTGTGAGGTGCAATGTGTGCTTTGAGCTTT  435

seq1  TCTTGGGAGCGACCTTGTTTGAACATTAACTGCCTTAAGTGCTTGCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGAGCGACCTTGTTTGAACATTAACTGCCTTAAGTGCTTGCTGAC  485

seq1  ATAAAGTCTTGGCCTCTGTGGGAAAGTACTAGCTCAGCTGAGTACAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTCTTGGCCTCTGTGGGAAAGTACTAGCTCAGCTGAGTACAAATA  535

seq1  GACGTAGATCCTGAAGTCAGCGGTGAACAAATAGCAATAAATCTTGTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTAGATCCTGAAGTCAGCGGTGAACAAATAGCAATAAATCTTGTGGA  585

seq1  TAGGTGCCTACTAGCCCAGTCTGTTCTGATTTTCCTGCTGAACTGTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGCCTACTAGCCCAGTCTGTTCTGATTTTCCTGCTGAACTGTTTAT  635

seq1  CCTGTCAATATCCTGTTCCTGGAAACAGGTGCATTACCCAGAGACAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAATATCCTGTTCCTGGAAACAGGTGCATTACCCAGAGACAAAGC  685

seq1  AACCCCCTCCACCCTCATTCCTGCTTCTATGAGTATATAACCTGTGGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCTCCACCCTCATTCCTGCTTCTATGAGTATATAACCTGTGGGGG  735

seq1  GGAAAATAAAAATTTGTCAGCTTGATCAGGACCTCCTGTCTTGCTGTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATAAAAATTTGTCAGCTTGATCAGGACCTCCTGTCTTGCTGTCCA  785

seq1  TTCTTTGTGTTTCTTGTTCCCCCATTTTCTTCTAGGTGCCCAAGTCCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGTGTTTCTTGTTCCCCCATTTTCTTCTAGGTGCCCAAGTCCCTG  835

seq1  TTTGACTGTCCTATGGGTTGAAACAAGCTTTAGTAAAGTTTCTTTTATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGTCCTATGGGTTGAAACAAGCTTTAGTAAAGTTTCTTTTATGA  885

seq1  ATGTGGGTACCCTTGCATTTGTAGCATAGATGTTCAGAATTGAGAGTTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTACCCTTGCATTTGTAGCATAGATGTTCAGAATTGAGAGTTCT  935

seq1  TCTTGGTTGATTTTTCCTTTGATTCGTAGGAAGTGTCCTTTCTTATCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTGATTTTTCCTTTGATTCGTAGGAAGTGTCCTTTCTTATCTTT  985

seq1  TTTGATATCTTTTGATTGAAAGTTGATTTT  1030
      ||||||||||||||||||||||||||||||
seq2  TTTGATATCTTTTGATTGAAAGTTGATTTT  1015

seq1: chr13_76371409_76372519
seq2: B6Ng01-041F22.g_67_1177

seq1  GAATTCAGAAGAGATGTGGAGAATTGAGAAAGCATGGTATTTCCCAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGAGATGTGGAGAATTGAGAAAGCATGGTATTTCCCAGGTG  50

seq1  CTATGGGACAGAGAGGGAAGAGCAAGATATAAGGAATGCTAAGATCATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGACAGAGAGGGAAGAGCAAGATATAAGGAATGCTAAGATCATGG  100

seq1  TAGCCAGGTTTCTTTGTGCTATATTTCTTGGACATAGTGGTCATTTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGGTTTCTTTGTGCTATATTTCTTGGACATAGTGGTCATTTAAAC  150

seq1  AAGAAAGGGAACCCTGAGACTGGTGGCAGTCATCCAAACATTAGTTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGGAACCCTGAGACTGGTGGCAGTCATCCAAACATTAGTTCAAT  200

seq1  CCTCTTTATTATTTTCTCCTTCTGTACGGGAGAAGTAAATTGGGAAAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTATTATTTTCTCCTTCTGTACGGGAGAAGTAAATTGGGAAAGGT  250

seq1  AAAGCCCAGATTCAGAAAGGGATTACAAAAAAAAAAAAACAAACAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAGATTCAGAAAGGGATTACAAAAAAAAAAAAACAAACAAAAAA  300

seq1  CAAAACCCAAAAAACAACAACAACAACAACAACAACAACAACAAAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCCAAAAAACAACAACAACAACAACAACAACAACAACAAAAACAG  350

seq1  TGAAAGCAGTGAGTGCAAAGAGGAAGAGGAAGCATAATTAAACCAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAGTGAGTGCAAAGAGGAAGAGGAAGCATAATTAAACCAAAATT  400

seq1  ATTCTAAAGCATATCCAAAGATAATCTTTGGTAATCATCTGTGTTCAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAGCATATCCAAAGATAATCTTTGGTAATCATCTGTGTTCAGTA  450

seq1  AAATTTTACACTGATATATTTTCATGTAAATTGGTAATAAATTAAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTACACTGATATATTTTCATGTAAATTGGTAATAAATTAAAATTA  500

seq1  CACTATAGGAAGTTTGAGAGTTTTGCATTATCAGCCGGTAAACAAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATAGGAAGTTTGAGAGTTTTGCATTATCAGCCGGTAAACAAAGGAA  550

seq1  ACAGCAATATTAATATTCATGGGCTAGTGAGATGACTCAGAGGGTAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATATTAATATTCATGGGCTAGTGAGATGACTCAGAGGGTAAAGG  600

seq1  TGATTGGCACCAAGCCTGATGACCTTACTTGAACCCTGGGACCCACACGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGCACCAAGCCTGATGACCTTACTTGAACCCTGGGACCCACACGT  650

seq1  TAGAAGGAGATAATCAACACCCCCAAGTCCTCCTATGATTGCCAAACAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGAGATAATCAACACCCCCAAGTCCTCCTATGATTGCCAAACAGG  700

seq1  CTTCCATGAATAAATCTAATAACTTAACATTTTAAATTTAAATAATATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATGAATAAATCTAATAACTTAACATTTTAAATTTAAATAATATAA  750

seq1  ATTATGTTCGAATTAGTGTTCACATGTATTCCTTATGAACACTCTATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTCGAATTAGTGTTCACATGTATTCCTTATGAACACTCTATAAG  800

seq1  TTACACCTCCTGGAACGTCCCCAGGAATGATTGGCTACTTTATTTCCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCTCCTGGAACGTCCCCAGGAATGATTGGCTACTTTATTTCCTGT  850

seq1  CCAGGCTCAAATTTCTGGATTAGGTTTTATTTCTTGCCAGTGTTTTCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCAAATTTCTGGATTAGGTTTTATTTCTTGCCAGTGTTTTCATT  900

seq1  ATACAAAATTCTTTGGCATTCACTTAACAAAATTAAGAATCATCTATTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATTCTTTGGCATTCACTTAACAAAATTAAGAATCATCTATTTA  950

seq1  CTTACTTGAATTCTAAGAGGTTCATTTCATGCTGATAATCTCCTCGGACC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTGAATTCTAAGAGGTTCATTTCATGCTGATAATCTCCTCGGACC  1000

seq1  A-TCTTTAAATTTGAGGT-GTGCTCAGAGGCAGAGGCCTC-TATCTTTCC  1047
      | |||||||| ||||||| | |||| || ||||||||||| ||||||| |
seq2  ATTCTTTAAA-TTGAGGTGGGGCTCCGATGCAGAGGCCTCTTATCTTT-C  1048

seq1  TAAAAGCTGCATTACCTAATGGAAGTAAATATGTTTGTATGTGAGATCAA  1097
      |||||||||||||||||||||||||| |||||||||||| | ||||||||
seq2  TAAAAGCTGCATTACCTAATGGAAGT-AATATGTTTGTAGGGGAGATCAA  1097

seq1  AGACTCCAGCAGTT  1111
      | ||||  ||||||
seq2  AAACTCAGGCAGTT  1111