BAC Information

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BAC

Clone NameB6Ng01-041J19
Chromosome11 (Build37)13 (Build37)
Map Location 16,030,321 - 16,031,41950,127,897 - 50,128,004
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583, Egfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041J19.bB6Ng01-041J19.g
ACCDH868226DH868227
length1,098942
definitionDH868226|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J19, 5' end.DH868227|Mus musculus domesticus DNA, BAC clone: B6Ng01-041J19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,030,321 - 16,031,419)(50,127,897 - 50,128,004)
sequence
gaattccatgtcttcatctagaagagtgtatgtccacatacaattatatc
catttttaactctcttgtcaagagaattatttctaaattatataaatagt
ggcacctatgctaaaatgattaaaaaccgtgttgtatttcagttatgaaa
aatttaatcagcaattttattagttacttattagtaaattagaatttgaa
gtcctttacttataaaactataaatacaagagtaacaagaattagtacaa
tataaactatattagaacatcactttataattaaacatcatgacataaat
tggcatcttaaattattcttccatatagaaatatactatttgactgcaca
tttttccctcacagcctcccataatagagtgaaatgcatatagactaggt
gaaagctatgtctcacaaacttaggccttctttaaaatggttaaaactga
acagtaatttgtttctgtctgttgtattttttggcagatgtcaggaatta
ctaaataggaaaaatttaattatgactctttattcaatggctaattaaac
atggtagtgatgtatcatccattgttacattattacttagaataaaaact
tgctatttaaatttataaatattttaaataaagaattaattaattaaaat
aatcatattagggagtctgcatgttcttctaagaaatcaatagttattta
atgaaaatgccagtatcaggattgtaaaattaccctatgagttgttagtt
agggagactaaaaagtcacccatagcaacacatattatagctattagtat
ttaatgcacagtagaacctgatgtcaagatcctattggtgatgatgacaa
tgatacactttgtattcaaaacacagagaggttttttttaaaaaaagatt
tatttatttatttttatgtatgagagtacactgtagctgttacagatggt
tgtgagccttcatgtggtctggggaattgaaattagaacttctgctcgcc
tccggcccaaaaatttatttatttatatatgtgaattcactgaagcgtcc
ttaaaacaccataatatggctgtcacatcttaaagggtgattgtgagt
gaattcatccctttgcttctaatatgcaatgtagtctgctatacctggct
gtagtaaagattctaagaatactttgctagacttgccctgagatttctaa
ctcttaaccagtaaagaaagcatgcaagaccctccacaatattgcaggga
catatctagggcattctagctatggggatgctgagattccaggagactaa
gtttccttgaaactctgcctcaggactgcttccaggtttctaaacctgta
atgcgagtcactactggagtggatgtagcactcctccatggctagaggga
ttgcaaatttgtacagccactatggtaatcaatctggtggtttctcagaa
attataaatatttcttactgaagatccaactaacctgcttctgggtggtt
tatacccacaagacactccactatatcccaggggcatgtgcccctctatg
ttcaaagcagctttattcataatcgccagaaactggaaacaatgtagata
tccctaaagtggagaaaggatacagaaaatatggtttatttacacaatga
aatactattcagctattaaaaacaatgacattattaattttgcatggaag
tggatggaagcagaaaaaaaaatcatcctgagtgtggtaactcagaccca
aaagaacatgcatggtatgtacactgataagtgcatattagccataaagt
acagagtatctacgataaaactcacagacccaaagaaataaacaaaaaga
aaggctcaagtgggaatgcttgagtcccacttagaaagggaattaaaata
gtcataggagtcagaaggagggagggaattatgtggaataggacagggta
cacctcctgtgcatcagtaagcctctccatcttcagcaggtggtttagta
tgatcaacacactagcttgggtcgtgagatgaccacaaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_16030321_16031419
seq2: B6Ng01-041J19.b_41_1137

seq1  GAATTCCATGTCTTCATCTAGAAGAGTGTATGTCCACATACAATTATATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTCTTCATCTAGAAGAGTGTATGTCCACATACAATTATATC  50

seq1  CATTTTTAACTCTCTTGTCAAGAGAATTATTTCTAAATTATATAAATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAACTCTCTTGTCAAGAGAATTATTTCTAAATTATATAAATAGT  100

seq1  GGCACCTATGCTAAAATGATTAAAAACCGTGTTGTATTTCAGTTATGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCTATGCTAAAATGATTAAAAACCGTGTTGTATTTCAGTTATGAAA  150

seq1  AATTTAATCAGCAATTTTATTAGTTACTTATTAGTAAATTAGAATTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATCAGCAATTTTATTAGTTACTTATTAGTAAATTAGAATTTGAA  200

seq1  GTCCTTTACTTATAAAACTATAAATACAAGAGTAACAAGAATTAGTACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTACTTATAAAACTATAAATACAAGAGTAACAAGAATTAGTACAA  250

seq1  TATAAACTATATTAGAACATCACTTTATAATTAAACATCATGACATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTATATTAGAACATCACTTTATAATTAAACATCATGACATAAAT  300

seq1  TGGCATCTTAAATTATTCTTCCATATAGAAATATACTATTTGACTGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTTAAATTATTCTTCCATATAGAAATATACTATTTGACTGCACA  350

seq1  TTTTTCCCTCACAGCCTCCCATAATAGAGTGAAATGCATATAGACTAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTCACAGCCTCCCATAATAGAGTGAAATGCATATAGACTAGGT  400

seq1  GAAAGCTATGTCTCACAAACTTAGGCCTTCTTTAAAATGGTTAAAACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTATGTCTCACAAACTTAGGCCTTCTTTAAAATGGTTAAAACTGA  450

seq1  ACAGTAATTTGTTTCTGTCTGTTGTATTTTTTGGCAGATGTCAGGAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATTTGTTTCTGTCTGTTGTATTTTTTGGCAGATGTCAGGAATTA  500

seq1  CTAAATAGGAAAAATTTAATTATGACTCTTTATTCAATGGCTAATTAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATAGGAAAAATTTAATTATGACTCTTTATTCAATGGCTAATTAAAC  550

seq1  ATGGTAGTGATGTATCATCCATTGTTACATTATTACTTAGAATAAAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTGATGTATCATCCATTGTTACATTATTACTTAGAATAAAAACT  600

seq1  TGCTATTTAAATTTATAAATATTTTAAATAAAGAATTAATTAATTAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTAAATTTATAAATATTTTAAATAAAGAATTAATTAATTAAAAT  650

seq1  AATCATATTAGGGAGTCTGCATGTTCTTCTAAGAAATCAATAGTTATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATATTAGGGAGTCTGCATGTTCTTCTAAGAAATCAATAGTTATTTA  700

seq1  ATGAAAATGCCAGTATCAGGATTGTAAAATTACCCTATGAGTTGTTAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATGCCAGTATCAGGATTGTAAAATTACCCTATGAGTTGTTAGTT  750

seq1  AGGGAGACTAAAAAGTCACCCATAGCAACACATATTATAGCTATTAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACTAAAAAGTCACCCATAGCAACACATATTATAGCTATTAGTAT  800

seq1  TTAATGCACAGTAGAACCTGATGTCAAGATCCTATTGGTGATGATGACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCACAGTAGAACCTGATGTCAAGATCCTATTGGTGATGATGACAA  850

seq1  TGATACAC-TTGTATTCAAAACACAGAGAGGTTTTTTTAAAAAAAAGATT  899
      |||||||| ||||||||||||||||||||||||||||| |||||||||||
seq2  TGATACACTTTGTATTCAAAACACAGAGAGGTTTTTTTTAAAAAAAGATT  900

seq1  TATTTATTTATTTTTATGTATGAGAGTACACTGTAGCTG-TACAGATGGT  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATTTATTTATTTTTATGTATGAGAGTACACTGTAGCTGTTACAGATGGT  950

seq1  TGTGAGCCTTCATGTGGTTCTTGGGAATTGAATTTTAGGAACTCTGCTCG  998
      ||||||||||||||||| ||| ||||||||||  |||| |  ||||||||
seq2  TGTGAGCCTTCATGTGG-TCTGGGGAATTGAA-ATTAGAACTTCTGCTCG  998

seq1  -CTCCGGCCCAAAGATTTATTTATTATTATATGTGAGTACACTGTAGCTG  1047
       |||||||||||| |||||||||||  ||||||||| | ||||| ||| |
seq2  CCTCCGGCCCAAAAATTTATTTATTTATATATGTGAATTCACTGAAGC-G  1047

seq1  TCTTCAGACACACCAGAATA-GGCTGTCAGATCTCATTATGGGTGATTGT  1096
      || | | | |||||| |||| |||||||| ||||  | | ||||||||||
seq2  TCCTTA-AAACACCATAATATGGCTGTCACATCT--TAAAGGGTGATTGT  1094

seq1  GAG  1099
      |||
seq2  GAG  1097

seq1: chr13_50127897_50128004
seq2: B6Ng01-041J19.g_911_1009 (reverse)

seq1  ATTTTTGTGGTCATCTCACTGACCCTAGCTAGTGTGTTGATTCATAACTA  50
      | ||||||||||||||||| ||||| |||||||||||||| |||| ||||
seq2  AATTTTGTGGTCATCTCAC-GACCCAAGCTAGTGTGTTGA-TCAT-ACTA  47

seq1  AACCACCTGCTTGAAAGATGGAGATGGCTTTACTGATGCACAGGAGGGTG  100
      |||||||||||   |||||||||| ||| |||||||||||||||| ||||
seq2  AACCACCTGCT--GAAGATGGAGA-GGC-TTACTGATGCACAGGA-GGTG  92

seq1  TAGCCCTG  108
      || |||||
seq2  TA-CCCTG  99