BAC Information

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BAC

Clone NameB6Ng01-042E15
Chromosome13 (Build37)
Map Location 19,799,191 - 19,895,799
singlet/doubletdoublet
Overlap geneA530099J19Rik, Gpr141
Upstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071, Tcrg, Tcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3
Downstream geneLOC432730, Elmo1, LOC100040226, LOC665381, LOC665386, Aoah
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042E15.bB6Ng01-042E15.g
ACCDH868709DH868710
length1,0641,128
definitionDH868709|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E15, 5' end.DH868710|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,799,191 - 19,800,268)(19,894,671 - 19,895,799)
sequence
gaattcactaatgtttatgtcatttgagtaaaaacacaaatattactgtt
agaaagtaacctgccaagctttgctccagtagaagttaagatgccttgtg
gggtgggaggttgctttcttgttttcatagagaacaatgctaaccaatca
gtcaacttccatgcatttaaggttgctttttgctaactttctgagtgtgg
acatgtttcctatgaggtctccgtgaggccacatggactggcagtgggtg
tctctatcagcttggtcaaatttccttacctcccatcctaccaatatttt
tgcttcagattataatgctggtggcttctgtgaaggttaactgcttgaaa
tgtacagtcctcagcttatggtgaatattcagtaattattatcaatttct
gtgcagagatattactttaaactacctttcttagtttttctgtttgcaat
tatatgtatttttaaaacttgcaagagcatcatttcacaaaggattttat
accaaccagtaaaaatagaatagaggtaaggagtgaggcagagggagagg
actgcgggatgtttgttcagaggacggctgctgcaaatgtcctgttacat
tgagtcactggccagtaaaagagacaacatttgactacagcatttgattt
taggtcatcttaacaccattatgtcatctgagacaaattgctctttccac
agaataaaaaaggtcatgcatacccgtgacacattgttctgtattaaatt
gttttgattctcacaaagatagcgtaacacagtcggatttggtctctgga
caaatatactagaaacaatgatgaaaactaagggttttaagacattaaat
gggcataagtgaagaaaggtgatgatcaacagtagatagctacaaaatta
gatgagccttcatcccttcactcttcccctaagtcctctccttgtctcct
cctgtgacctcctcccctgcacatctcccatgcaccctcccctacactct
tcccgcacttctcccgtgcactctcctgtactcctcccctgaatcaattc
ctctgcaatctcct
gaattctctggccctggaagcttctagatactagaaaaatcctccaaaca
gaagaaaacattggagtatgcacgacctctaagctaacaggtagcctcta
aggtgctctggctgcagatattagctcttggaaatgccacagcagcccag
cagatttagaagtcaaatttgataagagcttgagctgaggcataattagg
acagatgttgaacccaggtaaagaacttagtcactgacgtgagtcccaaa
tctagtctctagtgctacaggcatttaaaaaaaaaaaaaaagacaaaaca
aacaacgaaaatctgttctctgaaaatattcttggagaaaaagctggacc
agagaagaagcctttgttctaactaagtaggatattgttttgaacttgat
tttacgagtggaataggcatttcttcccccttgcttttgcaagtactagc
aaggagacagcagagtgagattccatcttcagagagcagccaaacccaag
ccaactgggaaaacttgggaaaatgaacattgtgttgtgtgtgaggtaga
tgctatccaacatcaggcagagcatcctgggttgctcctgggtaaaagca
gattcattcaaagtgctgtgtggggagaggaagcagaggcatctgtaggg
cactgactccatagatcctgagttcatctctggcataagtattgaaagtg
accagaatggtagtgcaacaagaaggtgcaaaactcaaaggctttgctta
agaaatgtattcaaatatgtcaatataatgcctcttattgttctttgtag
tctattagttattgttgttattgagaaattccacttgcatataatgtctt
gagatgagttttctaccaagtcctcttatcttgctcctatctctatcaac
ctctcctcaacccctccttctcttttctagaattaaagtctttttttatt
ttatgactcatttgatttaaccagtgccatctgggtgacatttataatgg
aactatccactgtttctgatggggtcattagttgaaatacagtgaagaca
ataagcatccccaccttccaatctaatagcatcaaataggtcatcatgat
ggagtgggagctcctgactcctctcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_19799191_19800268
seq2: B6Ng01-042E15.b_47_1110

seq1  GAATTCACTAATGTTTATGTCATTTGAGTAAAAACACAAATATTACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATGTTTATGTCATTTGAGTAAAAACACAAATATTACTGTT  50

seq1  AGAAAGTAACCTGCCAAGCTTTGCTCCAGTAGAAGTTAAGATGCCTTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTAACCTGCCAAGCTTTGCTCCAGTAGAAGTTAAGATGCCTTGTG  100

seq1  GGGTGGGAGGTTGCTTTCTTGTTTTCATAGAGAACAATGCTAACCAATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGAGGTTGCTTTCTTGTTTTCATAGAGAACAATGCTAACCAATCA  150

seq1  GTCAACTTCCATGCATTTAAGGTTGCTTTTTGCTAACTTTCTGAGTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTTCCATGCATTTAAGGTTGCTTTTTGCTAACTTTCTGAGTGTGG  200

seq1  ACATGTTTCCTATGAGGTCTCCGTGAGGCCACATGGACTGGCAGTGGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTCCTATGAGGTCTCCGTGAGGCCACATGGACTGGCAGTGGGTG  250

seq1  TCTCTATCAGCTTGGTCAAATTTCCTTACCTCCCATCCTACCAATATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCAGCTTGGTCAAATTTCCTTACCTCCCATCCTACCAATATTTT  300

seq1  TGCTTCAGATTATAATGCTGGTGGCTTCTGTGAAGGTTAACTGCTTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGATTATAATGCTGGTGGCTTCTGTGAAGGTTAACTGCTTGAAA  350

seq1  TGTACAGTCCTCAGCTTATGGTGAATATTCAGTAATTATTATCAATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTCCTCAGCTTATGGTGAATATTCAGTAATTATTATCAATTTCT  400

seq1  GTGCAGAGATATTACTTTAAACTACCTTTCTTAGTTTTTCTGTTTGCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGATATTACTTTAAACTACCTTTCTTAGTTTTTCTGTTTGCAAT  450

seq1  TATATGTATTTTTAAAACTTGCAAGAGCATCATTTCACAAAGGATTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATTTTTAAAACTTGCAAGAGCATCATTTCACAAAGGATTTTAT  500

seq1  ACCAACCAGTAAAAATAGAATAGAGGTAAGGAGTGAGGCAGAGGGAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCAGTAAAAATAGAATAGAGGTAAGGAGTGAGGCAGAGGGAGAGG  550

seq1  ACTGCGGGATGTTTGTTCAGAGGACGGCTGCTGCAAATGTCCTGTTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCGGGATGTTTGTTCAGAGGACGGCTGCTGCAAATGTCCTGTTACAT  600

seq1  TGAGTCACTGGCCAGTAAAAGAGACAACATTTGACTACAGCATTTGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCACTGGCCAGTAAAAGAGACAACATTTGACTACAGCATTTGATTT  650

seq1  TAGGTCATCTTAACACCATTATGTCATCTGAGACAAATTGCTCTTTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCATCTTAACACCATTATGTCATCTGAGACAAATTGCTCTTTCCAC  700

seq1  AGAATAAAAAAGGTCATGCATACCCGTGACACATTGTTCTGTATTAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAAAAGGTCATGCATACCCGTGACACATTGTTCTGTATTAAATT  750

seq1  GTTTTGATTCTCACAAAGATAGCGTAACACAGTCGGATTTGGTCTCTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATTCTCACAAAGATAGCGTAACACAGTCGGATTTGGTCTCTGGA  800

seq1  CAAATATACTAGAAACAATGATGAAAACTAAGGGTTTTAAGACATTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATACTAGAAACAATGATGAAAACTAAGGGTTTTAAGACATTAAAT  850

seq1  GGGCATAAGTGAAGAAGGGTGATGATCAACAGTAGATAGCTACAAAATTA  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGGCATAAGTGAAGAAAGGTGATGATCAACAGTAGATAGCTACAAAATTA  900

seq1  GATGAGCCTTTCATCCCTTCACTCTTCCCCCTAAAGTCCTCTCCTTGTCC  950
      |||||||| |||||||||||||||||||||   ||||||||||||||| |
seq2  GATGAGCC-TTCATCCCTTCACTCTTCCCC--TAAGTCCTCTCCTTGT-C  946

seq1  TCCTCCCTGTGCCCTCCTCCCCCTGCACTTCTCCCATTGCACCCCTCCCC  1000
      |||| |||||| |||||| ||||||||| ||||||| |||||||   |||
seq2  TCCT-CCTGTGACCTCCT-CCCCTGCACATCTCCCA-TGCACCC--TCCC  991

seq1  CTACACTCCTTCCCCGCACTTCTCCCCGTGCACTCCTCCCTGTACTCCTC  1050
      ||||||||  | ||||||||||| |||||||||||   ||||||||||| 
seq2  CTACACTC--TTCCCGCACTTCT-CCCGTGCACTC--TCCTGTACTCCT-  1035

seq1  CCCCTGAACTCATTCCCTCTGCA--CTCCT  1078
      |||||||| ||| | ||||||||  |||||
seq2  CCCCTGAA-TCAATTCCTCTGCAATCTCCT  1064

seq1: chr13_19894671_19895799
seq2: B6Ng01-042E15.g_64_1191 (reverse)

seq1  GGGGAG-GGAGTCAGGAGCT-CCACT-CATCACTGATGAACTATTTGATG  47
      |||||| ||||||||||||| ||||| ||||| |||||| ||||||||||
seq2  GGGGAGAGGAGTCAGGAGCTCCCACTCCATCA-TGATGACCTATTTGATG  49

seq1  CTAATAGATTTGGAAGGTGGGGATTGCTTATTGTCTTCCACTGTATTTCC  97
      ||| |||| |||||||||||||| ||||||||||||| ||||||||||| 
seq2  CTATTAGA-TTGGAAGGTGGGGA-TGCTTATTGTCTT-CACTGTATTTCA  96

seq1  ACTAATGACCCCATCAGAAACCAGTGGATAGTTCCAATATAAATGTCACC  147
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  ACTAATGACCCCATCAGAAA-CAGTGGATAGTTCCATTATAAATGTCACC  145

seq1  CAGATGGCACTGGTTAAATCAAATGAGTCATAAAAT-AAAAAAGACTTTA  196
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGATGGCACTGGTTAAATCAAATGAGTCATAAAATAAAAAAAGACTTTA  195

seq1  ATTCTAGAAAAGAGAAGGAGGGGTTGAGGAGAGGTTGATAGAGATAGGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGAAAAGAGAAGGAGGGGTTGAGGAGAGGTTGATAGAGATAGGAG  245

seq1  CAAGATAAGAGGACTTGGTAGAAAACTCATCTCAAGACATTATATGCAAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAAGAGGACTTGGTAGAAAACTCATCTCAAGACATTATATGCAAG  295

seq1  TGGAATTTCTCAATAACAACAATAACTAATAGACTACAAAGAACAATAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTCTCAATAACAACAATAACTAATAGACTACAAAGAACAATAAG  345

seq1  AGGCATTATATTGACATATTTGAATACATTTCTTAAGCAAAGCCTTTGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTATATTGACATATTTGAATACATTTCTTAAGCAAAGCCTTTGAG  395

seq1  TTTTGCACCTTCTTGTTGCACTACCATTCTGGTCACTTTCAATACTTATG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCACCTTCTTGTTGCACTACCATTCTGGTCACTTTCAATACTTATG  445

seq1  CCAGAGATGAACTCAGGATCTATGGAGTCAGTGCCCTACAGATGCCTCTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATGAACTCAGGATCTATGGAGTCAGTGCCCTACAGATGCCTCTG  495

seq1  CTTCCTCTCCCCACACAGCACTTTGAATGAATCTGCTTTTACCCAGGAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTCCCCACACAGCACTTTGAATGAATCTGCTTTTACCCAGGAGC  545

seq1  AACCCAGGATGCTCTGCCTGATGTTGGATAGCATCTACCTCACACACAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGATGCTCTGCCTGATGTTGGATAGCATCTACCTCACACACAAC  595

seq1  ACAATGTTCATTTTCCCAAGTTTTCCCAGTTGGCTTGGGTTTGGCTGCTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTCATTTTCCCAAGTTTTCCCAGTTGGCTTGGGTTTGGCTGCTC  645

seq1  TCTGAAGATGGAATCTCACTCTGCTGTCTCCTTGCTAGTACTTGCAAAAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGATGGAATCTCACTCTGCTGTCTCCTTGCTAGTACTTGCAAAAG  695

seq1  CAAGGGGGAAGAAATGCCTATTCCACTCGTAAAATCAAGTTCAAAACAAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGGGAAGAAATGCCTATTCCACTCGTAAAATCAAGTTCAAAACAAT  745

seq1  ATCCTACTTAGTTAGAACAAAGGCTTCTTCTCTGGTCCAGCTTTTTCTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACTTAGTTAGAACAAAGGCTTCTTCTCTGGTCCAGCTTTTTCTCC  795

seq1  AAGAATATTTTCAGAGAACAGATTTTCGTTGTTTGTTTTGTCTTTTTTTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATTTTCAGAGAACAGATTTTCGTTGTTTGTTTTGTCTTTTTTTT  845

seq1  TTTTTTTAAATGCCTGTAGCACTAGAGACTAGATTTGGGACTCACGTCAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAATGCCTGTAGCACTAGAGACTAGATTTGGGACTCACGTCAG  895

seq1  TGACTAAGTTCTTTACCTGGGTTCAACATCTGTCCTAATTATGCCTCAGC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAGTTCTTTACCTGGGTTCAACATCTGTCCTAATTATGCCTCAGC  945

seq1  TCAAGCTCTTATCAAATTTGACTTCTAAATCTGCTGGGCTGCTGTGGCAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTCTTATCAAATTTGACTTCTAAATCTGCTGGGCTGCTGTGGCAT  995

seq1  TTCCAAGAGCTAATATCTGCAGCCAGAGCACCTTAGAGGCTACCTGTTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGAGCTAATATCTGCAGCCAGAGCACCTTAGAGGCTACCTGTTAG  1045

seq1  CTTAGAGGTCGTGCATACTCCAATGTTTTCTTCTGTTTGGAGGATTTTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGGTCGTGCATACTCCAATGTTTTCTTCTGTTTGGAGGATTTTTC  1095

seq1  TAGTATCTAGAAGCTTCCAGGGCCAGAGAATTC  1129
      |||||||||||||||||||||||||||||||||
seq2  TAGTATCTAGAAGCTTCCAGGGCCAGAGAATTC  1128