BAC Information

Click to search

BAC

Clone NameB6Ng01-042E19
Chromosome13 (Build37)
Map Location 117,007,322 - 117,008,379
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041023, LOC547402, LOC100041045, EG623174
Downstream geneIsl1, EG668276, Gm280, LOC100041169, Parp8, LOC668288, LOC623312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042E19.bB6Ng01-042E19.g
ACCDH868717DH868718
length1,0521,191
definitionDH868717|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E19, 5' end.DH868718|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaaatcacgttgaggacaagtttataatccgtaaaggggataa
tctgtcactggggaagttatcctagaagaaatgtaattctttgaaatatt
tatgctactaaggagaaggagaagaaggaaaaaggatttccaaaaattta
accctcttacttgttcctattcccaccttgccaagagagagaaaaatcca
gctgacaggtttgaaaaaaccaagttgtgatgttcagaaaacaaatgagc
tttggggttagttgagaatggtgtgttccaagtgacttgaaattggggat
atttcctccagtattctttttttctttgctcatttgtttttgttttattt
ttggttatgtttcacagtaaaaaaaaaaaaataaaaaggtaaggtagttt
ccttattccttagaactattttcttttctttttttttttctttttttgtt
tccattttttattaggtatttagctcatttacatttccatattttatttt
cttaaatgatcatttaagtcataagtttctagaaggagaaattggaatgg
ccaattcagtcttgaaaggataaggagaaaaaactctgatctccaactct
agaactcgaaaatttgcaatctcccactgttcccaggacattgtctcagt
gacaatagaagcatcatttcatttgctgcaacaaatactcattaactgcc
tgctatgacttaggttttaagattatatgaatgaagaacataaggcaaaa
tatctggtttaccagaagtcccttccttctcataggaatggttacaacga
gagtgttaagtctgcagattggaatgtctcacatcacctctccctttctc
tttcactgtagtctctcagcaaatatcctgtgagcattttttaatgattt
ctttacattcatatttatttacaatgcctaagtttaagactgcatatttg
gtatacattgtaaacattgtggaggtacatatactaacataccccagata
ttgttgagaaacactgatttgtcaatcattcatcatccaatacccatcca
gt
gaattctttgtttagctttgaggcccatttttaatggggttatttgattt
tctgaagtccaccttcttgagttcttcatatatatattgaatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctgttggtgcct
tttttgtcttattgacggtgtcttttgccttgcagaagctttgcaatttt
ataaggtcccatttgtcgattctggatcttaaagaacaagccattgctgt
tctattcaggaaattttcccctgtacccatatcttcaaggcttttctcta
ctttctcctctataagtttcagtgtctctggttttatgtagagttccttt
atccacttagatttgaccttagtacaaggagataggtatggatcgattcg
cattcttctacatgataaccgccagttgtgccatcaccatttgttgaaaa
tgctgtcttttttccactggatggtttttgctcccttgtcaaagatcaag
tgaccataggtgtgtgggttcatttctgggtcttcaattctattccattg
gtctacttgtctgtcactataccagtaccatgcagtttttatcacagttg
ctctgtagtatagctttaggtcaggcatggtgattccaccagagattttt
ttatccttgagcagagtttttgctatcctaggttttttggtattccagat
gaatatgcaaattgctctttctaattcattgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
attactatactgatcctgccaatccatgaatatgggagatctttccctct
tctgcattcttctccaagttcttttatgagagacttgaagttctgtcata
cagatttttcacttgcttggttagagttaccccaaaatattctatattat
ttgtgactattgtaaatggtgttatttccacattttctttctcagcctgt
ttatcatttggtaaaggaatgttactgtattgttggagttatttacatct
gcaacctgcctgaagtggttataactagaaggtctctgaaagaatgttcg
gatgcgtatataccatacatcactggcaaagagaacctgaagttcctcca
atattaccttcatctttctggcttagggtccgcagatccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_117007322_117008379
seq2: B6Ng01-042E19.b_48_1099 (reverse)

seq1  ACTGGATGGGTAGTTGGATGGATGAATGAATGGACAAATCAGTGTATCTC  50
      |||||||||||| |||||| |||||||| || ||||||||||||| ||||
seq2  ACTGGATGGGTA-TTGGAT-GATGAATG-ATTGACAAATCAGTGTTTCTC  47

seq1  AACACATATCTTGGGGTATGTTAGTATATGTACAT-CACAATGTATACAA  99
      |||| ||||| |||||||||||||||||||||| | |||||||| |||||
seq2  AACA-ATATC-TGGGGTATGTTAGTATATGTACCTCCACAATGTTTACAA  95

seq1  TGTATACCAAATATGCAGTCTTAAACTTAGGCATTGTAAAATAAATATGA  149
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTATACCAAATATGCAGTCTTAAACTTAGGCATTGT-AAATAAATATGA  144

seq1  ATGTAAAGAAATCATTAAAAAATGCTCACAGGATATTTTGCTGAGAGACT  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGTAAAGAAATCATTAAAAAATGCTCACAGGATA-TTTGCTGAGAGACT  193

seq1  ACAGTGAAAGAGAAAGGGAGAGGTGATGTGAGACATTCCAATCTGCAGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGAAAGAGAAAGGGAGAGGTGATGTGAGACATTCCAATCTGCAGAC  243

seq1  TTAACACTCTCGTTGTAACCATTCCTATGAGAAGGAAGGGACTTCTGGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTCTCGTTGTAACCATTCCTATGAGAAGGAAGGGACTTCTGGTA  293

seq1  AACCAGATATTTTGCCTTATGTTCTTCATTCATATAATCTTAAAACCTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATATTTTGCCTTATGTTCTTCATTCATATAATCTTAAAACCTAA  343

seq1  GTCATAGCAGGCAGTTAATGAGTATTTGTTGCAGCAAATGAAATGATGCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAGCAGGCAGTTAATGAGTATTTGTTGCAGCAAATGAAATGATGCT  393

seq1  TCTATTGTCACTGAGACAATGTCCTGGGAACAGTGGGAGATTGCAAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTCACTGAGACAATGTCCTGGGAACAGTGGGAGATTGCAAATTT  443

seq1  TCGAGTTCTAGAGTTGGAGATCAGAGTTTTTTCTCCTTATCCTTTCAAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTTCTAGAGTTGGAGATCAGAGTTTTTTCTCCTTATCCTTTCAAGA  493

seq1  CTGAATTGGCCATTCCAATTTCTCCTTCTAGAAACTTATGACTTAAATGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTGGCCATTCCAATTTCTCCTTCTAGAAACTTATGACTTAAATGA  543

seq1  TCATTTAAGAAAATAAAATATGGAAATGTAAATGAGCTAAATACCTAATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAGAAAATAAAATATGGAAATGTAAATGAGCTAAATACCTAATA  593

seq1  AAAAATGGAAACAAAAAAAGAAAAAAAAAAAGAAAAGAAAATAGTTCTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGAAACAAAAAAAGAAAAAAAAAAAGAAAAGAAAATAGTTCTAA  643

seq1  GGAATAAGGAAACTACCTTACCTTTTTATTTTTTTTTTTTTACTGTGAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGGAAACTACCTTACCTTTTTATTTTTTTTTTTTTACTGTGAAA  693

seq1  CATAACCAAAAATAAAACAAAAACAAATGAGCAAAGAAAAAAAGAATACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCAAAAATAAAACAAAAACAAATGAGCAAAGAAAAAAAGAATACT  743

seq1  GGAGGAAATATCCCCAATTTCAAGTCACTTGGAACACACCATTCTCAACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAATATCCCCAATTTCAAGTCACTTGGAACACACCATTCTCAACT  793

seq1  AACCCCAAAGCTCATTTGTTTTCTGAACATCACAACTTGGTTTTTTCAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAAGCTCATTTGTTTTCTGAACATCACAACTTGGTTTTTTCAAA  843

seq1  CCTGTCAGCTGGATTTTTCTCTCTCTTGGCAAGGTGGGAATAGGAACAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCAGCTGGATTTTTCTCTCTCTTGGCAAGGTGGGAATAGGAACAAG  893

seq1  TAAGAGGGTTAAATTTTTGGAAATCCTTTTTCCTTCTTCTCCTTCTCCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGGTTAAATTTTTGGAAATCCTTTTTCCTTCTTCTCCTTCTCCTT  943

seq1  AGTAGCATAAATATTTCAAAGAATTACATTTCTTCTAGGATAACTTCCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCATAAATATTTCAAAGAATTACATTTCTTCTAGGATAACTTCCCC  993

seq1  AGTGACAGATTATCCCCTTTACGGATTATAAACTTGTCCTCAACGTGATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACAGATTATCCCCTTTACGGATTATAAACTTGTCCTCAACGTGATT  1043

seq1  TTGGAATTC  1058
      |||||||||
seq2  TTGGAATTC  1052