BAC Information

Click to search

BAC

Clone NameB6Ng01-043G09
Chromosome13 (Build37)
Map Location 65,485,969 - 65,589,528
singlet/doubletdoublet
Overlap geneLOC665753, EG544944, EG665767, LOC665777
Upstream geneCcrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750
Downstream geneEG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892, EG665974, LOC100041915, 2410141K09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043G09.bB6Ng01-043G09.g
ACCDH869474DH869475
length1,0741,000
definitionDH869474|Mus musculus domesticus DNA, BAC clone: B6Ng01-043G09, 5' end.DH869475|Mus musculus domesticus DNA, BAC clone: B6Ng01-043G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,588,449 - 65,589,528)(65,485,969 - 65,486,856)
sequence
gaattccactttagtaaaatacatgccacatgttttccagtagaaattac
ccatccccccacccccaccctttcctcactataaatttctagatattttc
ttagaactaattttcaggtaaaaatcttttctcatgaggtttctctcctg
tatgaattctctaatgaatcataagatcatatttgtgagtgaagcatttg
tcacatttactacatttgtaaggcttctttcttgtatgaattatctgatg
actactaggactgtgtttgttgttacagcatttgtcacactcactacatt
tataaggtttctctccagtatgaattctctgatgaatattaagactgtat
ttgtgaaaaaagcatttgtcacattcactacatctgtaaggtttctctcc
tgtatggattctctgatgttgtctaagcttgcatttcttggtgaaacatc
tggcacgttcactacatttgtaaggtttctttccactattggtttgtttc
agcctgagtatttgtgtagagttaaaaactttatcaagcactataccatt
gtgctctttctttcctatgtggattccttgatgtagaccagtgatagaac
acaaatttaaacagtttatacagtttttatgtttgcaaggtcctctggtg
tttccattttgatgactgtttatgtttgatgactcaacacgtgtattcct
gaagttagcttggtaaagtacactttgggtgtattcaggaataatttttg
ccatgctttgacctttgtaagacttctcctgtatattcacacactgggat
gtgttggaccttttaatcattatgcatttatttgtttttaatgaggcttt
actggataaaaatatcttttaaatcatcttcatgttcatgtccatatgaa
aattcaaatatgtatttatcatatttaaaagatagatatgttattctata
taagtgaggacaatgtccactaatgaataacatctcctggtctagttgtg
ttaactctttaaaagtaattcatgccgtggtggttgcacactccttattc
ccagcctttggagcagatgcaggc
gaattcactgacctcactgtggtgaaggtcttgtgggagacatttccatt
agtgatttttctcacttaatgaaacacagtcatttcataatgaaactgtc
ttttcacatacatttacaaagccttattttgcaggcacaatctgaatctc
aatgtcctttccatagaatattcccgtctttgtatgttatctggtattct
tagcatctccctagtacattggaaagctatcccaaagtgcagtgcttctg
tgctatcatatgcattactgtcacggtgcttctcactctgctaacatgca
ttcttctttctcttttcaaatcagtgccttttattgcatcaggaagctat
gagattccaaatcccaacagtggcaatttaccatttaggtgatgtcttag
attctgttgctgtaaaaaccaccatagccaaagaaacatgtgagaaaagt
gtttatttacttatgtaccttggtcacagtatattgtgtgaagccaaggc
cttatactctacacaaaggataaaccggatgagaaagaaattagggaaac
aacaaccttcactataggtacaaataatatgaaataccttggtgtgattc
tatctaagaaagtgaaagatttgtatgataagaacttgaattctctgaaa
aaagaaatcaaagaagatctcagaagatggaaagatctcccatgctcata
gaatggaaggatcaatacagtaaaaatggctatcttgccaaaagcaatct
acagattcaatgcaatccccatcaaaattccaactaaattcttcatcgaa
ttagaaagggcaatttgcaaattcatctggaatacaaaaagacctaggat
agcaaaagctattctcaatgataaaagaaccttctggtggaatcaccatg
cctgacttcaaactgtactacagagcaattgtgataaaaactgcatggta
ctagtacagtgacaacagctagacatggattgaagacccagaaatgaact

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65588449_65589528
seq2: B6Ng01-043G09.b_43_1116 (reverse)

seq1  GCCTGCATCTGCCTCCCAAGTGCTGGGATTAAAGGAGTGTGCCACCACCA  50
      ||||||||||| |||| ||| ||||||| | ||||||||||| |||||||
seq2  GCCTGCATCTG-CTCCAAAG-GCTGGGAAT-AAGGAGTGTGCAACCACCA  47

seq1  CCGGCCTGAATTACTTTTAAAGAGTTTACCACAACTAGACCAGGAGATGT  100
       |||| |||||||||||||||||| ||| |||||||||||||||||||||
seq2  -CGGCATGAATTACTTTTAAAGAG-TTAACACAACTAGACCAGGAGATGT  95

seq1  TATTCA-TAGTGGACATTGTCCTCACTTATATAAGAATAACATATCTATT  149
      |||||| ||||||||||||||||||||||||| ||||||||||||||| |
seq2  TATTCATTAGTGGACATTGTCCTCACTTATAT-AGAATAACATATCTA-T  143

seq1  CTTTTAAATATGATAAATACATATTTGAATTTTCATATGGACATGAACAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAATATGATAAATACATATTTGAATTTTCATATGGACATGAACAT  193

seq1  GAAGATGATTTAAAAGATATTTTTATCCAGTAAAGCCTCATTAAAAACAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGATTTAAAAGATATTTTTATCCAGTAAAGCCTCATTAAAAACAA  243

seq1  ATAAATGCATAATGATTAAAAGGTCCAACACATCCCAGTGTGTGAATATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCATAATGATTAAAAGGTCCAACACATCCCAGTGTGTGAATATA  293

seq1  CAGGAGAAGTCTTACAAAGGTCAAAGCATGGCAAAAATTATTCCTGAATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAAGTCTTACAAAGGTCAAAGCATGGCAAAAATTATTCCTGAATA  343

seq1  CACCCAAAGTGTACTTTACCAAGCTAACTTCAGGAATACACGTGTTGAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAAGTGTACTTTACCAAGCTAACTTCAGGAATACACGTGTTGAGT  393

seq1  CATCAAACATAAACAGTCATCAAAATGGAAACACCAGAGGACCTTGCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAACATAAACAGTCATCAAAATGGAAACACCAGAGGACCTTGCAAA  443

seq1  CATAAAAACTGTATAAACTGTTTAAATTTGTGTTCTATCACTGGTCTACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAACTGTATAAACTGTTTAAATTTGTGTTCTATCACTGGTCTACA  493

seq1  TCAAGGAATCCACATAGGAAAGAAAGAGCACAATGGTATAGTGCTTGATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAATCCACATAGGAAAGAAAGAGCACAATGGTATAGTGCTTGATA  543

seq1  AAGTTTTTAACTCTACACAAATACTCAGGCTGAAACAAACCAATAGTGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTAACTCTACACAAATACTCAGGCTGAAACAAACCAATAGTGGA  593

seq1  AAGAAACCTTACAAATGTAGTGAACGTGCCAGATGTTTCACCAAGAAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACCTTACAAATGTAGTGAACGTGCCAGATGTTTCACCAAGAAATG  643

seq1  CAAGCTTAGACAACATCAGAGAATCCATACAGGAGAGAAACCTTACAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTAGACAACATCAGAGAATCCATACAGGAGAGAAACCTTACAGAT  693

seq1  GTAGTGAATGTGACAAATGCTTTTTTCACAAATACAGTCTTAATATTCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAATGTGACAAATGCTTTTTTCACAAATACAGTCTTAATATTCAT  743

seq1  CAGAGAATTCATACTGGAGAGAAACCTTATAAATGTAGTGAGTGTGACAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAATTCATACTGGAGAGAAACCTTATAAATGTAGTGAGTGTGACAA  793

seq1  ATGCTGTAACAACAAACACAGTCCTAGTAGTCATCAGATAATTCATACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTAACAACAAACACAGTCCTAGTAGTCATCAGATAATTCATACAA  843

seq1  GAAAGAAGCCTTACAAATGTAGTAAATGTGACAAATGCTTCACTCACAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGCCTTACAAATGTAGTAAATGTGACAAATGCTTCACTCACAAA  893

seq1  TATGATCTTATGATTCATTAGAGAATTCATACAGGAGAGAAACCTCATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCTTATGATTCATTAGAGAATTCATACAGGAGAGAAACCTCATGA  943

seq1  GAAAAGATTTTTACCTGAAAATTAGTTCTAAGAAAATATCTAGAAATTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGATTTTTACCTGAAAATTAGTTCTAAGAAAATATCTAGAAATTTA  993

seq1  TAGTGAGGAAAGGGTGGGGGTGGGGGGATGGGTAATTTCTACTGGAAAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGGAAAGGGTGGGGGTGGGGGGATGGGTAATTTCTACTGGAAAAC  1043

seq1  ATGTGGCATGTATTTTACTAAAGTGGAATTC  1080
      |||||||||||||||||||||||||||||||
seq2  ATGTGGCATGTATTTTACTAAAGTGGAATTC  1074

seq1: chr13_65485969_65486856
seq2: B6Ng01-043G09.g_67_954

seq1  GAATTCACTGACCTCACTGTGGTGAAGGTCTTGTGGGAGACATTTCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACCTCACTGTGGTGAAGGTCTTGTGGGAGACATTTCCATT  50

seq1  AGTGATTTTTCTCACTTAATGAAACACAGTCATTTCATAATGAAACTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTTTTCTCACTTAATGAAACACAGTCATTTCATAATGAAACTGTC  100

seq1  TTTTCACATACATTTACAAAGCCTTATTTTGCAGGCACAATCTGAATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACATACATTTACAAAGCCTTATTTTGCAGGCACAATCTGAATCTC  150

seq1  AATGTCCTTTCCATAGAATATTCCCGTCTTTGTATGTTATCTGGTATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCTTTCCATAGAATATTCCCGTCTTTGTATGTTATCTGGTATTCT  200

seq1  TAGCATCTCCCTAGTACATTGGAAAGCTATCCCAAAGTGCAGTGCTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCTCCCTAGTACATTGGAAAGCTATCCCAAAGTGCAGTGCTTCTG  250

seq1  TGCTATCATATGCATTACTGTCACGGTGCTTCTCACTCTGCTAACATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCATATGCATTACTGTCACGGTGCTTCTCACTCTGCTAACATGCA  300

seq1  TTCTTCTTTCTCTTTTCAAATCAGTGCCTTTTATTGCATCAGGAAGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTCTCTTTTCAAATCAGTGCCTTTTATTGCATCAGGAAGCTAT  350

seq1  GAGATTCCAAATCCCAACAGTGGCAATTTACCATTTAGGTGATGTCTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCCAAATCCCAACAGTGGCAATTTACCATTTAGGTGATGTCTTAG  400

seq1  ATTCTGTTGCTGTAAAAACCACCATAGCCAAAGAAACATGTGAGAAAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTGCTGTAAAAACCACCATAGCCAAAGAAACATGTGAGAAAAGT  450

seq1  GTTTATTTACTTATGTACCTTGGTCACAGTATATTGTGTGAAGCCAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTTACTTATGTACCTTGGTCACAGTATATTGTGTGAAGCCAAGGC  500

seq1  CTTATACTCTACACAAAGGATAAACCGGATGAGAAAGAAATTAGGGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACTCTACACAAAGGATAAACCGGATGAGAAAGAAATTAGGGAAAC  550

seq1  AACAACCTTCACTATAGGTACAAATAATATGAAATACCTTGGTGTGATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCTTCACTATAGGTACAAATAATATGAAATACCTTGGTGTGATTC  600

seq1  TATCTAAGAAAGTGAAAGATTTGTATGATAAGAACTTGAATTCTCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGAAAGTGAAAGATTTGTATGATAAGAACTTGAATTCTCTGAAA  650

seq1  AAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATCAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATA  700

seq1  GAATGGAAGGATCAATACAGTAAAAATGGCTATCTTGCCAAAAGCAATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGAAGGATCAATACAGTAAAAATGGCTATCTTGCCAAAAGCAATCT  750

seq1  ACAGATTCAATGCAATCCCCATCAAAATTCCAACTAAATTCTTCATCGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTCAATGCAATCCCCATCAAAATTCCAACTAAATTCTTCATCGAA  800

seq1  TTAGAAAGGGCAATTTGCAAATTCATCTGGAATAACAAAAAGACCTAGGA  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTAGAAAGGGCAATTTGCAAATTCATCTGGAAT-ACAAAAAGACCTAGGA  849

seq1  TAGCAAAAGCTATTCTCAATGATAAAAGAACC-TCTGGT  888
      |||||||||||||||||||||||||||||||| ||||||
seq2  TAGCAAAAGCTATTCTCAATGATAAAAGAACCTTCTGGT  888