BAC Information

Click to search

BAC

Clone NameB6Ng01-043I07
Chromosome13 (Build37)
Map Location 99,406,164 - 99,568,723
singlet/doubletdoublet
Overlap geneTmem174, Tmem171, LOC669675, Fcho2
Upstream geneLOC100039740, Rgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501
Downstream geneTnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27, Mtap1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043I07.bB6Ng01-043I07.g
ACCDH869557DH869558
length916989
definitionDH869557|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I07, 5' end.DH869558|Mus musculus domesticus DNA, BAC clone: B6Ng01-043I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,406,164 - 99,407,078)(99,567,725 - 99,568,723)
sequence
gaattcaaaaccagagcagaggggaatttaaccagggcagcttaatttag
cagtctcggggcacttctttcccaccttgaatgacatctgtaagatctcc
tgagctgctttgacacctaacttctgaagaacacagcgataaactctcca
agtatcacatcacagggcttaaatgtccgtccccttagcattgcagtctc
tagcgaggtagagcgtatatctcctcatacggtggaggagagaaacatac
gcagtcctcctcttccaactccgtcccttctagctggtcagcatcagagt
cgggcctgaaacatgagcacaaaacacaggtctacttgcaaagatccatt
gccaccaccctgcggtggcaggctgcgcaaagattcacggtccccatcac
cttcctggaagtccaaacacagccagagaccataactgtgatgcagaacg
ggagggggaaggggagcagcccagggcccggcatacctgtcatatccagt
gcccacgaaaggagagaagccctcactctccacgaacgcagcattgtctt
gagggtagatggtgtagtactgagggggacttggtgcggcagccgctgct
ccgctaggaggtatgagaccgcaaggattcatcatgggttgcaggtaggt
ggcgttcattcccaggggctcctgagaaccgtaaggaggagggatatact
gcaccacggtggccccgtggaaggtgatgggctgattgatgccagtgaaa
acgaacgactgtccttcggaaagtctggtccgagtcctggaccctctcct
cggtatctgagcacaacttggcagatagctttttgaattttgcacacagc
gatcaggatgattgtcaatccgactgacagaaggatgggtcgagtagctg
ggtcaattcaaggtgg
gaattcaaggcaggagccaccatggcccagctgtcaccgcctttaatccc
agtactgaagaggcagagggatctgtgaattcggggccactctagtctat
agagttggatcccagaaagaacagccagggctacaagaaaaatcctgtct
cgaaaaccaaaagaaaaaaaaagatgctaatatttatttctgtatttact
tttaaaagatgatcaaagtactactcatagcattatttaaaaatatagac
aaaatcaaaacacaaaaaatttttgttgtgattgtctgtttgtggtattg
tctgctgtgtttcccaagctgactttaatttatgatctggcttggcctac
tgaatagataagattataggtatttgctctcatctgtggcatataaatga
gtaaatgagcagaggaaaatcacagggctaccagtgagggcttgtttctg
tcagtactttctgggcaggggtgtgtgtgtgtgtgactaggaagtatttg
aagacaagtatggaaatttggagttgaggtgatgcggatgcctaagtatg
gttaggttgggagagttggacgttagtgcaagagcagtgtggaacccatc
aaaataaatggacagggatggctatagactatttcactattaaggttagt
gcacagttgaaaagggctagaggaattacagaacaggtaaagagtagcac
ttagaggttatatatatcgggcaatttgtgtgtcccccccaccaatattt
attttatatgtaacactgctaattgtttttttttttttaatttttaattt
tacttttttagcctaaaatcttcatgttgttagaagttagataaatgttt
tctagtgtagtgttttagatctattgcaaataaataaactctgagctcag
gacatcatagttgctggtgatcatttagtttttgcaaatgttgtcataag
ctcattattttgtgcagtgggtgcctttattacagcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_99406164_99407078
seq2: B6Ng01-043I07.b_45_960

seq1  GAATTCAAAACCAGAGCAGAGGGGAATTTAACCAGGGCAGCTTAATTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACCAGAGCAGAGGGGAATTTAACCAGGGCAGCTTAATTTAG  50

seq1  CAGTCTCGGGGCACTTCTTTCCCACCTTGAATGACATCTGTAAGATCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCGGGGCACTTCTTTCCCACCTTGAATGACATCTGTAAGATCTCC  100

seq1  TGAGCTGCTTTGACACCTAACTTCTGAAGAACACAGCGATAAACTCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGCTTTGACACCTAACTTCTGAAGAACACAGCGATAAACTCTCCA  150

seq1  AGTATCACATCACAGGGCTTAAATGTCCGTCCCCTTAGCATTGCAGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCACATCACAGGGCTTAAATGTCCGTCCCCTTAGCATTGCAGTCTC  200

seq1  TAGCGAGGTAGAGCGTATATCTCCTCATACGGTGGAGGAGAGAAACATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGAGGTAGAGCGTATATCTCCTCATACGGTGGAGGAGAGAAACATAC  250

seq1  GCAGTCCTCCTCTTCCAACTCCGTCCCTTCTAGCTGGTCAGCATCAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCTCCTCTTCCAACTCCGTCCCTTCTAGCTGGTCAGCATCAGAGT  300

seq1  CGGGCCTGAAACATGAGCACAAAACACAGGTCTACTTGCAAAGATCCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCCTGAAACATGAGCACAAAACACAGGTCTACTTGCAAAGATCCATT  350

seq1  GCCACCACCCTGCGGTGGCAGGCTGCGCAAAGATTCACGGTCCCCATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCACCCTGCGGTGGCAGGCTGCGCAAAGATTCACGGTCCCCATCAC  400

seq1  CTTCCTGGAAGTCCAAACACAGCCAGAGACCATAACTGTGATGCAGAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGAAGTCCAAACACAGCCAGAGACCATAACTGTGATGCAGAACG  450

seq1  GGAGGGGGAAGGGGAGCAGCCCAGGGCCCGGCATACCTGTCATATCCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGGAAGGGGAGCAGCCCAGGGCCCGGCATACCTGTCATATCCAGT  500

seq1  GCCCACGAAAGGAGAGAAGCCCTCACTCTCCACGAACGCAGCATTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACGAAAGGAGAGAAGCCCTCACTCTCCACGAACGCAGCATTGTCTT  550

seq1  GAGGGTAGATGGTGTAGTACTGAGGGGGACTTGGTGCGGCAGCCGCTGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTAGATGGTGTAGTACTGAGGGGGACTTGGTGCGGCAGCCGCTGCT  600

seq1  CCGCTAGGAGGTATGAGACCGCAAGGATTCATCATGGGTTGCAGGTAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTAGGAGGTATGAGACCGCAAGGATTCATCATGGGTTGCAGGTAGGT  650

seq1  GGCGTTCATTCCCAGGGGCTCCTGAGAACCGTAAGGAGGAGGGATATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTTCATTCCCAGGGGCTCCTGAGAACCGTAAGGAGGAGGGATATACT  700

seq1  GCACCACGGTGGCCCCGTGGAAGGTGATGGGCTGATTGATGCCAGTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCACGGTGGCCCCGTGGAAGGTGATGGGCTGATTGATGCCAGTGAAA  750

seq1  ACGAACGACTGTCCTCCGG-AAGTCTGGTCCGAGTCCGGGACCCTCTCCT  799
      ||||||||||||||| ||| ||||||||||||||||| ||||||||||||
seq2  ACGAACGACTGTCCTTCGGAAAGTCTGGTCCGAGTCCTGGACCCTCTCCT  800

seq1  CGTTATCTGAGCACAAC-TGGCAGGATAGCATTTTGAA-TTTGCACACAG  847
      || |||||||||||||| ||||| |||||| ||||||| |||||||||||
seq2  CGGTATCTGAGCACAACTTGGCA-GATAGCTTTTTGAATTTTGCACACAG  849

seq1  CGATCAGGATGAATGTCACTCCGACCGACAGAAGGATGGGTCCGAGGAGC  897
      |||||||||||| ||||| |||||| ||||||||||||||| |||| |||
seq2  CGATCAGGATGATTGTCAATCCGACTGACAGAAGGATGGGT-CGAGTAGC  898

seq1  TGGGTCCATTCAAAGTGG  915
      |||||| |||||| ||||
seq2  TGGGTCAATTCAAGGTGG  916

seq1: chr13_99567725_99568723
seq2: B6Ng01-043I07.g_68_1056 (reverse)

seq1  CATGCTGTAATTAAAGGCCACCACTGCCCAAAATAATGAGCCTTATGACA  50
      |||||||||| |||||||  ||||||| |||||||||||| |||||||| 
seq2  CATGCTGTAA-TAAAGGCACCCACTGCACAAAATAATGAG-CTTATGAC-  47

seq1  AACATTTGCATAAAACTAAATGATTCACCAGCAACTATGATGTCCTGAGC  100
      |||||||||| |||||||||||| ||||||||||||||||||||||||||
seq2  AACATTTGCA-AAAACTAAATGA-TCACCAGCAACTATGATGTCCTGAGC  95

seq1  TTCAGAGTTTAATTTATTTTGCAAATAGATCTAAAACACTACACTAGAAA  150
       ||||||||| ||||| ||||| |||||||||||||||||||||||||||
seq2  -TCAGAGTTT-ATTTA-TTTGC-AATAGATCTAAAACACTACACTAGAAA  141

seq1  ACATTTATCTAACTACTAACAACATGAAGATTTTAGGCTAAAAAAAGTAA  200
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  ACATTTATCTAACTTCTAACAACATGAAGATTTTAGGCT-AAAAAAGTAA  190

seq1  AATTAAAAATTAAAAAAAAAAAAACAATTAGCAGTGTTACATATAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAATTAAAAAAAAAAAAACAATTAGCAGTGTTACATATAAAATA  240

seq1  AATATTGGTGGGGGGGACACACAAATTGCCCGATATATATAACCTCTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGGTGGGGGGGACACACAAATTGCCCGATATATATAACCTCTAAG  290

seq1  TGCTACTCTTTACCTGTTCTGTAATTCCTCTAGCCCTTTTCAACTGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACTCTTTACCTGTTCTGTAATTCCTCTAGCCCTTTTCAACTGTGCA  340

seq1  CTAACCTTAATAGTGAAATAGTCTATAGCCATCCCTGTCCATTTATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTTAATAGTGAAATAGTCTATAGCCATCCCTGTCCATTTATTTTG  390

seq1  ATGGGTTCCACACTGCTCTTGCACTAACGTCCAACTCTCCCAACCTAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTTCCACACTGCTCTTGCACTAACGTCCAACTCTCCCAACCTAACC  440

seq1  ATACTTAGGCATCCGCATCACCTCAACTCCAAATTTCCATACTTGTCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAGGCATCCGCATCACCTCAACTCCAAATTTCCATACTTGTCTTC  490

seq1  AAATACTTCCTAGTCACACACACACACACCCCTGCCCAGAAAGTACTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTCCTAGTCACACACACACACACCCCTGCCCAGAAAGTACTGAC  540

seq1  AGAAACAAGCCCTCACTGGTAGCCCTGTGATTTTCCTCTGCTCATTTACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAGCCCTCACTGGTAGCCCTGTGATTTTCCTCTGCTCATTTACT  590

seq1  CATTTATATGCCACAGATGAGAGCAAATACCTATAATCTTATCTATTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATATGCCACAGATGAGAGCAAATACCTATAATCTTATCTATTCAG  640

seq1  TAGGCCAAGCCAGATCATAAATTAAAGTCAGCTTGGGAAACACAGCAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCAAGCCAGATCATAAATTAAAGTCAGCTTGGGAAACACAGCAGAC  690

seq1  AATACCACAAACAGACAATCACAACAAAAATTTTTTGTGTTTTGATTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCACAAACAGACAATCACAACAAAAATTTTTTGTGTTTTGATTTTG  740

seq1  TCTATATTTTTAAATAATGCTATGAGTAGTACTTTGATCATCTTTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTTTTAAATAATGCTATGAGTAGTACTTTGATCATCTTTTAAAA  790

seq1  GTAAATACAGAAATAAATATTAGCATCTTTTTTTTTCTTTTGGTTTTCGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATACAGAAATAAATATTAGCATCTTTTTTTTTCTTTTGGTTTTCGA  840

seq1  GACAGGATTTTTCTTGTAGCCCTGGCTGTTCTTTCTGGGATCCAACTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGATTTTTCTTGTAGCCCTGGCTGTTCTTTCTGGGATCCAACTCTA  890

seq1  TAGACTAGAGTGGCCCCGAATTCACAGATCCCTCTGCCTCTTCAGTACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTAGAGTGGCCCCGAATTCACAGATCCCTCTGCCTCTTCAGTACTG  940

seq1  GGATTAAAGGCGGTGACAGCTGGGCCATGGTGGCTCCTGCCTTGAATTC  999
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGCGGTGACAGCTGGGCCATGGTGGCTCCTGCCTTGAATTC  989