BAC Information

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BAC

Clone NameB6Ng01-043J03
Chromosome12 (Build37)13 (Build37)
Map Location 26,265,241 - 26,265,7539,933,648 - 9,934,781
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGrhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2
Downstream geneLOC100042973, LOC100042974, LOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043J03.bB6Ng01-043J03.g
ACCDH869593DH869594
length2441,124
definitionDH869593|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J03, 5' end.DH869594|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(26,265,241 - 26,265,753)(9,933,648 - 9,934,781)
sequence
tttttaatttgaacaagatttatcctgcctttgctctcttaacatagaat
ctaacccataccttggtatgcatgtttgagtgtgtctgagcacacaggtg
aaactttatgggtaaaaacatctgaaattactaggagacagtctcatatc
aaacttcctgaccctctggctcttatagtctcgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgcatctat
gaattcaagttcttgtctgtcacagagatctaactcgagagtttcacctt
tggtgcttttatattgggattaaaatctatacactctgaagtagctacca
tgcttatgaagctcattgactatgcaagtcttatggtggtttgaatgaga
atagcccccatagacacatatatttggatatttggctgctagttggtgga
actgtttgggaaggattaggatgagtggccttgtgggaaaaggtatgtca
ctagggcaagctctgaggtttctaaaggcccctgccatttgcagtgtgcc
tctctctgggtctcctgcttgcagatcaagatttgatctctcagaggttc
ctgtcaccaagcttatgcttcaccatcagaacttcaaccctctgaaacta
tagctcaatcaaacacttccttttataagttggcttggtcatgatgtttt
gttacagttataaaaaagtaactaagacaagtcttaaggaatttttgttc
actaaggaagacagtgagaatgagcttgaactgtctccaggatcctttta
gactcaaacatatcaggaatttcaagtaaaggaatttcagtctgggttaa
aaggctgagtttcctgatttccatcaccttgatttaattttgtgattata
gatgcttggatgttatggtaaagaaatgtcctccatagactcacatattg
gaatgcacttggtgcatagttggtggcctcgtttgggaagattattggac
cttaaggagatggagccttgctggagaaagtacatcactagagatgggct
atgggggtttacagtcttgactcacttcctgttctctctcaccatttcct
taatgcaggtgaaaatgtgacttctgtgatcccaggtttacagcaatgct
ggaactttcccttcagaaccatagaccgaataaactctttcttaagttgc
ttttggttctgatgttttatcacagcaacagaaagtgacaatgcagcgtg
gatctgggtcttttggcttatcaggaagatcaggagatggtgcttttgta
cctatttcattggccctactagccagaaatgtaagaacattaagattgtt
cctagtgcctcataattgtgaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_26265241_26265753
seq2: B6Ng01-043J03.b_95_275

seq1  ATAGAATCTAACCCATCGGTATGGTTTGGCCGTTCCTCTGTGGCTGTGGC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATACATTTGACTATGTTCAGGGATAGACTATATTCATAAACACAAACTGT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCATAAAATGTTTCTTTAATTCAGAGGTTCTCAATCTTCCTAATGCTGTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACTCTTTAATACAGTTCCTTATGTTGTGGTGACCCCCACCCATAAAATTA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTCATTGCCAATTCATAACTGTCATTTTGCTATTGTTATGAATAGTAA  250
                                                 |||| ||
seq2  -------------------------------------------ATAG-AA  6

seq1  CATAA---ATATCTGTGTTTTCGGATGGTTTTAGAAACTGTTTGTCAAAG  297
        |||   ||| ||           |||| |  | |  ||||||    ||
seq2  TCTAACCCATACCT-----------TGGTAT--GCA--TGTTTG----AG  37

seq1  GGGTTGTGACCTACAGGTTGAGAACCACTGTAATTTTTTAAACTCTTGCT  347
          |||| |        |||| | ||| |       | |||||      
seq2  ----TGTGTC--------TGAGCA-CACAG------GTGAAACT------  62

seq1  TTTTCTATTTTTCCCTTTTTGTTCTGTGGCATGAGATCTTCCCCATCACT  397
                           || || |  |  | ||||     || |||
seq2  ---------------------TTATGGGTAAAAACATCT--GAAATTACT  89

seq1  TGG-GAAACTCTCCAGTTTTGTCACGCTGTCCCAAATGGCACAATTCCTT  446
       || || | ||||      | |||  || |||    || | |  |  || 
seq2  AGGAGACAGTCTC-----ATATCAAACT-TCC----TGACCCTCTGGCTC  129

seq1  TCATTTTTTAAGGTGGGTGATTTTCGTGTGTGTGTGTGTGTGTGTGTGTG  496
      | ||               | | |||||||||||||||||||||||||||
seq2  TTAT---------------AGTCTCGTGTGTGTGTGTGTGTGTGTGTGTG  164

seq1  TGTGTGTGTGTGTGTGT  513
      |||||||||||||||||
seq2  TGTGTGTGTGTGTGTGT  181

seq1: chr13_9933648_9934781
seq2: B6Ng01-043J03.g_64_1187

seq1  GAATTCAAGTTCTTGTCTGTCACAGAGATCTAACTCGAGAGTTTCACCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTTCTTGTCTGTCACAGAGATCTAACTCGAGAGTTTCACCTT  50

seq1  TGGTGCTTTTATATTGGGATTAAAATCTATACACTCTGAAGTAGCTACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTTTTATATTGGGATTAAAATCTATACACTCTGAAGTAGCTACCA  100

seq1  TGCTTATGAAGCTCATTGACTATGCAAGTCTTATGGTGGTTTGAATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATGAAGCTCATTGACTATGCAAGTCTTATGGTGGTTTGAATGAGA  150

seq1  ATAGCCCCCATAGACACATATATTTGGATATTTGGCTGCTAGTTGGTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCCCATAGACACATATATTTGGATATTTGGCTGCTAGTTGGTGGA  200

seq1  ACTGTTTGGGAAGGATTAGGATGAGTGGCCTTGTGGGAAAAGGTATGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTGGGAAGGATTAGGATGAGTGGCCTTGTGGGAAAAGGTATGTCA  250

seq1  CTAGGGCAAGCTCTGAGGTTTCTAAAGGCCCCTGCCATTTGCAGTGTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCAAGCTCTGAGGTTTCTAAAGGCCCCTGCCATTTGCAGTGTGCC  300

seq1  TCTCTCTGGGTCTCCTGCTTGCAGATCAAGATTTGATCTCTCAGAGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGGGTCTCCTGCTTGCAGATCAAGATTTGATCTCTCAGAGGTTC  350

seq1  CTGTCACCAAGCTTATGCTTCACCATCAGAACTTCAACCCTCTGAAACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCAAGCTTATGCTTCACCATCAGAACTTCAACCCTCTGAAACTA  400

seq1  TAGCTCAATCAAACACTTCCTTTTATAAGTTGGCTTGGTCATGATGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCAATCAAACACTTCCTTTTATAAGTTGGCTTGGTCATGATGTTTT  450

seq1  GTTACAGTTATAAAAAAGTAACTAAGACAAGTCTTAAGGAATTTTTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGTTATAAAAAAGTAACTAAGACAAGTCTTAAGGAATTTTTGTTC  500

seq1  ACTAAGGAAGACAGTGAGAATGAGCTTGAACTGTCTCCAGGATCCTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGAAGACAGTGAGAATGAGCTTGAACTGTCTCCAGGATCCTTTTA  550

seq1  GACTCAAACATATCAGGAATTTCAAGTAAAGGAATTTCAGTCTGGGTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAACATATCAGGAATTTCAAGTAAAGGAATTTCAGTCTGGGTTAA  600

seq1  AAGGCTGAGTTTCCTGATTTCCATCACCTTGATTTAATTTTGTGATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTGAGTTTCCTGATTTCCATCACCTTGATTTAATTTTGTGATTATA  650

seq1  GATGCTTGGATGTTATGGTAAAGAAATGTCCTCCATAGACTCACATATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTGGATGTTATGGTAAAGAAATGTCCTCCATAGACTCACATATTG  700

seq1  GAATGCACTTGGTGCATAGTTGGTGGCCTCGTTTGGGAAGATTATTGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACTTGGTGCATAGTTGGTGGCCTCGTTTGGGAAGATTATTGGAC  750

seq1  CTTAAGGAGATGGAGCCTTGCTGGAGAAAGTACATCACTAGAGATGGGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGGAGATGGAGCCTTGCTGGAGAAAGTACATCACTAGAGATGGGCT  800

seq1  ATGGGGGTTTACAGTCTTGACTCACTTCCTGTTCTCTCTCACCATTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGGTTTACAGTCTTGACTCACTTCCTGTTCTCTCTCACCATTTCCT  850

seq1  TAATGCAGGTGAAAATGTGACTTCTGTGATCCCAGGTTTTACAGCAATGC  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAATGCAGGTGAAAATGTGACTTCTGTGATCCCAGG-TTTACAGCAATGC  899

seq1  TGGAACTTTCCCTTCAGAACCATAGACCGAATAAACTCTTTCTTAAGTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTTTCCCTTCAGAACCATAGACCGAATAAACTCTTTCTTAAGTTG  949

seq1  CTTTTGGTCCTGATGTTTTATCACAGCAACAGAAAAGTGACAAATGCAAG  1000
      |||||||| ||||||||||||||||||||||| |||||||| ||||| ||
seq2  CTTTTGGTTCTGATGTTTTATCACAGCAACAG-AAAGTGAC-AATGC-AG  996

seq1  CGTGGATCTGGGTCTTTTGGCCTATCAGGAAGAATCGGGAAGAATGTGCT  1050
      ||||||||||||||||||||| |||||||||| ||| || |||  |||||
seq2  CGTGGATCTGGGTCTTTTGGCTTATCAGGAAG-ATCAGG-AGATGGTGCT  1044

seq1  TTTGTA-CTATTTCATTGGCCCCAAACCAAGCAAGAAATGTAAGAACATT  1099
      |||||| ||||||||||||||| |   | ||| |||||||||||||||||
seq2  TTTGTACCTATTTCATTGGCCCTA---CTAGCCAGAAATGTAAGAACATT  1091

seq1  AAGAAATGTTCTATGTGCCTCATAGATTGTGAGGG  1134
      ||| | |||||   |||||||||| ||||||||||
seq2  AAG-ATTGTTCCTAGTGCCTCATA-ATTGTGAGGG  1124