BAC Information

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BAC

Clone NameB6Ng01-044I07
Chromosome13 (Build37)
Map Location 62,793,824 - 62,795,026
singlet/doubletsinglet
Overlap genenone
Upstream geneEG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978
Downstream geneEG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044I07.bB6Ng01-044I07.g
ACCDH870248DH870249
length1,1571,162
definitionDH870248|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I07, 5' end.DH870249|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I07, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtccctccatcttctcttcaactgattcttcccactcctgtcc
caatccaccctgagtccacccacaaaagctgttttatcccctttccaggg
agatccctgcctcctgcctatactcctctttacctaacctctctctcagt
tactgattattatttgcctaatatttactattactattaaatattaatat
ttatattgattattattgcctaatatttaatatccatgtatcactctgtg
tgtttgggttacctcacttagggtgatttttctagttgtatccatttgcc
tgtaattttatgatgtccttatttttagcagctgagtaatactccattgt
gtaaatgtaccacattttctttatccactcctcagtttagggacaactag
gttgattccagtttctgtgaagtatgaataaagcagatatgaacataatg
tggcaagtgtccttatgttcggatggaacaccttttggatatatacccaa
gagtggtatagttaggtcttgagatatatggattttcagttttctgagga
accatgatattgatttgcatagtgactattagttttcatccacacgtgca
tggaagattgtgccccttgttctgcatccttgccagcatgagctgtccat
tgtattattgatcttatctcttctgacagttttttttaaaatggaatctc
aaagtagttttgatttgcatttgcctgatgctaaagatgtttaacattct
taaagggtctctcagccatttgagattcctttgttgagaaatctgtttgg
ctttgtacccctttttattgattttttttttttttgttctttcaacatct
agtttattgagttctttttacatttttttttttaaaatttggcttctatc
tgttgtgaagtgggaaaatacttttccatttcttaagctgtctgtccagt
tgcctgttttgttttgtttgtttgtttttacttagaaagcttttcagttt
cagaagtcctgttattaactgttcatctaagggtctgaactatgaagttc
attcagatgttgtctctggggcatggcatcagggctttcccccatttcct
tcggtcactgagtggctctaggttctcttagagcctgattcccatgagat
ctatgtg
gaattcagagacagaagagagatggtgggaatgctgtaagtataatggaa
aatacagttttaaagtggaaaaggcttgatgattacgtgctccatagagg
agggaagtgtattagagcacaccacgtgttactcaggcctagtctctcag
gaggatcatcttaaaacttaaaaaaaaaaaaacaaaaccgtgaatcacaa
tcactacctagatacccttttgttaggactagtgtaactatagtaatttg
atttttttggtaaattcattttttatgcagattcttttgtttttgttttt
cgacacagggtttcttcgtgtagccctggctgtcctggaactcactctgt
agaccagggtggcctcgaactcagaaatccacctgcctctgcccaccaag
tgctgggattaaaggcatgtaccaccactgcccagcttctgtgcagattc
ttgaacacctggtgttggacccaaaaaaatgggctagcaggatacttatc
aatcatctcaaattgattacctcagtgttcattgctaataataggtactg
tcaaagcagggaatttatcaactcttttgtcctgtcgcttactgtctcca
ctttcccagcaccatgattgcaggcctgtgcctccatgtctggctgaggt
ggcttccacttcattgactgagtctctggaaacagtcctttggtgactta
taacagatgttatgataaagcaaaacaacatagctcctaatgtgaaaaac
aggggagtttaagataggaaggctgcattttatggtggacttctgttact
agagttaggaccttagtctgtgtcctagctaccctaacctgatatagact
cagccactcatgttcattaagccaattaaaagaacacatttatctagctg
tcacatgcctatctataatgctggtaatctggaggcaagttggcaagatt
ctctgatgtctagaacagattatagtccaggctatcagagactcatagta
agaaatctttaaataaacaacgaatgatacgtaaaaaaagaattctaatg
aactgaaacgataactgggctggagacatgctcaagatagtcagatctgc
cttcgagtctgattcaattccacaaccataatgttccaacctcgtaacag
acctgatgccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62793824_62795026
seq2: B6Ng01-044I07.g_67_1228

seq1  GAATTCAGAGACAGAAGAGAGATGGTGGGAATGCTGTAAGTATAATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGACAGAAGAGAGATGGTGGGAATGCTGTAAGTATAATGGAA  50

seq1  AATACAGTTTTAAAGTGGAAAAGGCTTGATGATTACGTGCTCCATAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGTTTTAAAGTGGAAAAGGCTTGATGATTACGTGCTCCATAGAGG  100

seq1  AGGGAAGTGTATTAGAGCACACCACGTGTTACTCAGGCCTAGTCTCTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGTGTATTAGAGCACACCACGTGTTACTCAGGCCTAGTCTCTCAG  150

seq1  GAGGATCATCTTAAAACTTAAAAAAAAAAAAACAAAACCGTGAATCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATCATCTTAAAACTTAAAAAAAAAAAAACAAAACCGTGAATCACAA  200

seq1  TCACTACCTAGATACCCTTTTGTTAGGACTAGTGTAACTATAGTAATTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTACCTAGATACCCTTTTGTTAGGACTAGTGTAACTATAGTAATTTG  250

seq1  ATTTTTTTGGTAAATTCATTTTTTATGCAGATTCTTTTGTTTTTGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTGGTAAATTCATTTTTTATGCAGATTCTTTTGTTTTTGTTTTT  300

seq1  CGACACAGGGTTTCTTCGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACACAGGGTTTCTTCGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGT  350

seq1  AGACCAGGGTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCCACCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGGTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCCACCAAG  400

seq1  TGCTGGGATTAAAGGCATGTACCACCACTGCCCAGCTTCTGTGCAGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGATTAAAGGCATGTACCACCACTGCCCAGCTTCTGTGCAGATTC  450

seq1  TTGAACACCTGGTGTTGGACCCAAAAAAATGGGCTAGCAGGATACTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACACCTGGTGTTGGACCCAAAAAAATGGGCTAGCAGGATACTTATC  500

seq1  AATCATCTCAAATTGATTACCTCAGTGTTCATTGCTAATAATAGGTACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCTCAAATTGATTACCTCAGTGTTCATTGCTAATAATAGGTACTG  550

seq1  TCAAAGCAGGGAATTTATCAACTCTTTTGTCCTGTCGCTTACTGTCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCAGGGAATTTATCAACTCTTTTGTCCTGTCGCTTACTGTCTCCA  600

seq1  CTTTCCCAGCACCATGATTGCAGGCCTGTGCCTCCATGTCTGGCTGAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCAGCACCATGATTGCAGGCCTGTGCCTCCATGTCTGGCTGAGGT  650

seq1  GGCTTCCACTTCATTGACTGAGTCTCTGGAAACAGTCCTTTGGTGACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCACTTCATTGACTGAGTCTCTGGAAACAGTCCTTTGGTGACTTA  700

seq1  TAACAGATGTTATGATAAAGCAAAACAACATAGCTCCTAATGTGAAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATGTTATGATAAAGCAAAACAACATAGCTCCTAATGTGAAAAAC  750

seq1  AGGGGAGTTTAAGATAGGAAGGCTGCATTTTATGGTGGACTTCTGTTACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGTTTAAGATAGGAAGGCTGCATTTTATGGTGGACTTCTGTTACT  800

seq1  AGAGTTAGGACCTTAGTCTGTGTCCTAGCTACCCTAACCTGATATAGACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAGGACCTTAGTCTGTGTCCTAGCTACCCTAACCTGATATAGACT  850

seq1  CAGCCACTCATGTTCATTAAGCCAATTAAAAGAACACATTTATCTAGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACTCATGTTCATTAAGCCAATTAAAAGAACACATTTATCTAGCTG  900

seq1  TCACATGCCTATCTATAATGCTGGTAATCTGGAGGCAAGGTGGGCAGAAT  950
      |||||||||||||||||||||||||||||||||||||| || ||||  ||
seq2  TCACATGCCTATCTATAATGCTGGTAATCTGGAGGCAA-GTTGGCAAGAT  949

seq1  TCTCTGATGTTCTAGAACAGATTATAGTTCCAGGCTATCCAGAGACTCAT  1000
      ||||||||| ||||||||||||||||| |||||||||| |||||||||||
seq2  TCTCTGATG-TCTAGAACAGATTATAG-TCCAGGCTAT-CAGAGACTCAT  996

seq1  AGTAAGAATATTCTTTAAAATAAAACAACAGAAATGAATACAGTAAAAAA  1050
      |||||||  | ||||||||   |||||||   |||| |||| ||||||||
seq2  AGTAAGA--AATCTTTAAA--TAAACAAC--GAATG-ATAC-GTAAAAAA  1038

seq1  AAAGGAAATTACTAATGAAAACTGAAAACAGATTAACTGGGCTGGAGACA  1100
      |   |||  | ||||||  ||||||||  |   |||||||||||||||||
seq2  A---GAA--TTCTAATG--AACTGAAACGA---TAACTGGGCTGGAGACA  1078

seq1  TGGCTCAGAGGATAAGTCAGTACTGCTCTTCTGGAGGTCCTGAGTTCAAT  1150
      | ||||  | ||| ||||||  |||| ||||  |||   |||| ||||||
seq2  T-GCTC--AAGAT-AGTCAGATCTGC-CTTC--GAG--TCTGA-TTCAAT  1118

seq1  TCCCAGCAACCACATGATGGCTCACAACCATCTGTAACAAGACCTGATGC  1200
      |||   ||||  ||| |||  |  ||||| || ||||| |||||||||||
seq2  TCC--ACAAC--CATAATG--TTCCAACC-TC-GTAAC-AGACCTGATGC  1159

seq1  CCT  1203
      |||
seq2  CCT  1162