BAC Information

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BAC

Clone NameB6Ng01-044M05
Chromosome13 (Build37)
Map Location 100,207,067 - 100,345,855
singlet/doubletdoublet
Overlap geneMtap1b
Upstream geneLOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797, Zfp366, Ptcd2, Mrps27
Downstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044M05.bB6Ng01-044M05.g
ACCDH870426DH870427
length9261,126
definitionDH870426|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M05, 5' end.DH870427|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,344,895 - 100,345,855)(100,207,067 - 100,208,202)
sequence
gaattcctccattgtcctacttggatctctctggacactttgatgtagtc
tggatttgtgatttctccctccctgcatccttccttccttccttccttcc
ttccttccttccttccttcctttctttctttctttctttctttctttctt
tctttctttctttctttctttctatctttctataagtgttagctctgcca
caaagtctttatttttctgctctcacctctacatctaactctgtcatagc
atctgcatccaggacaacaacccgcacacttgcagcatttctttctctac
tagcccaacatcactgccactccaaaaacaaaacacagggtttgccatgc
ctggagtgagacaaaggtcacttttatttctaagtcccttgctgcgctgg
aaatgagagcttctcttgttttatttttactggctaattaaagtccttgt
gcattttgtaacttatttgtaagagagggacaggaggcatacttgttagt
tattgggatggtgagatgagagaggaaaagggacctcactgctgatgtgg
gatttcccagggacacggagcattttcacctccccaggagtgctgggagc
tattcagctagaaagcaaagacttccctgcttgttcctgtctctcagacc
ctcactgacctgttgagctggctagatttttgtcaacttgacaagagctc
tttgaggagggaagttgagttgagggtttatctccatcagattgcctgta
gacaagtgtattagcattttcttcatggatgatttgatgtgggagggccc
cagcccactgtgggcggtgctatttcctcgaaagtggttctggaggtaca
aaaaaggaagctgaactgagcctgaggagcagccaataagcaccatctct
cgctatctctctctctcctctctctc
gaattctgaggaagccagggagcatggagcatagaatgctacagtttaag
gagaccagaaaagcaagcctccagcacagctggacaagtccctctccaga
cagggaaaatctaatcactctggaaaaaaacatcagcctgctgtacacaa
caagagagaaggacaaagacaagagctggagagagcccattaaggaggca
gatgggataggtcaggagataggagagatatcacaacatccttggggcta
cccaagagaaccacagcccctgtgttttcccatagtgcagctccaggcct
gtaggataaatatcaggatgaggacaggagtcaagggcaacaggtatctt
aagatacccactccatggtggtgctcaatccacacctctgcagtgaatgg
tgagaccactagggctttggcaatgctggcagtagtaaggacctgaggac
tagttctttgaaactggggctgcttccaaatgaactgggaagccatgttc
attggcaacagcagccacacagcaagccctattacaatgaaagtttcggt
atctttgtttccccagtgtataaccagatgcagtacactaggttacattg
cattaaatttggtcagttcaatacatgctgtcttcctgcagctgggacaa
gtgcctgccgatgcttatcagacagagccggttatcatggttcttcacag
atggatgatggacatgagtgggcgtaatactgctttgggatatgattgtc
tcttttgctcattacctttcctgattaaacgcagacacacggaaaagagg
aaggaagatacaggaataaatggctttactgaagatattgcaaaacaaat
gataatttctaaaccacgaacttctaactacgttttctttttgttgaatg
acctgcttagctaaagagaaatactaatagacagtgtgtctcttgggctt
ggcagacatgtaacaggatcttggaactgtgtgataagcgtattacgtgg
aattattagcagtgtgttccttatgtcaacaggaggagatctggcgtggc
ttgcctcaagtcattcctctgtgtgagtatcgattgactgggatgaaaat
ggaacagtacgcgctcattcaagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_100344895_100345855
seq2: B6Ng01-044M05.b_42_967 (reverse)

seq1  GAGAGAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
                                    ||||||||| ||||||||||
seq2  ------------------------------GAGAGAGAG-GAGAGAGAGA  19

seq1  GAGAGAGAGAGAAGAATGGTGCTTATTGGCTTGCTCCTCAGGCTCAGTTC  100
      || || |||||    ||||||||||||||| |||||||||||||||||||
seq2  GATAGCGAGAG----ATGGTGCTTATTGGC-TGCTCCTCAGGCTCAGTTC  64

seq1  AGCTTCCTTTTCTTGTACCTCCAGGACCACCTTCGAGGAAATAGCACCGC  150
      ||||||||||| |||||||||||| ||||| |||||||||||||||||||
seq2  AGCTTCCTTTT-TTGTACCTCCAGAACCACTTTCGAGGAAATAGCACCGC  113

seq1  CCACAGTGGGCT-GGGCCCTCCCACATC-AATCATCCATGAAGAAAATGC  198
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  CCACAGTGGGCTGGGGCCCTCCCACATCAAATCATCCATGAAGAAAATGC  163

seq1  TAATACACTTGTCTACAGGCAATCTGATGGAGATAAACCCTCAACTCAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACACTTGTCTACAGGCAATCTGATGGAGATAAACCCTCAACTCAAC  213

seq1  TTCCCTCCTCAAAGAGCTCTTGTCAAGTTGACAAAAATCTAGCCAGCTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCTCAAAGAGCTCTTGTCAAGTTGACAAAAATCTAGCCAGCTCA  263

seq1  ACAGGTCAGTGAGGGTCTGAGAGACAGGAACAAGCAGGGAAGTCTTTGCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCAGTGAGGGTCTGAGAGACAGGAACAAGCAGGGAAGTCTTTGCT  313

seq1  TTCTAGCTGAATAGCTCCCAGCACTCCTGGGGAGGTGAAAATGCTCCGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCTGAATAGCTCCCAGCACTCCTGGGGAGGTGAAAATGCTCCGTG  363

seq1  TCCCTGGGAAATCCCACATCAGCAGTGAGGTCCCTTTTCCTCTCTCATCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGAAATCCCACATCAGCAGTGAGGTCCCTTTTCCTCTCTCATCT  413

seq1  CACCATCCCAATAACTAACAAGTATGCCTCCTGTCCCTCTCTTACAAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCCCAATAACTAACAAGTATGCCTCCTGTCCCTCTCTTACAAATA  463

seq1  AGTTACAAAATGCACAAGGACTTTAATTAGCCAGTAAAAATAAAACAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAAAATGCACAAGGACTTTAATTAGCCAGTAAAAATAAAACAAGA  513

seq1  GAAGCTCTCATTTCCAGCGCAGCAAGGGACTTAGAAATAAAAGTGACCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCTCATTTCCAGCGCAGCAAGGGACTTAGAAATAAAAGTGACCTT  563

seq1  TGTCTCACTCCAGGCATGGCAAACCCTGTGTTTTGTTTTTGGAGTGGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACTCCAGGCATGGCAAACCCTGTGTTTTGTTTTTGGAGTGGCAG  613

seq1  TGATGTTGGGCTAGTAGAGAAAGAAATGCTGCAAGTGTGCGGGTTGTTGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTGGGCTAGTAGAGAAAGAAATGCTGCAAGTGTGCGGGTTGTTGT  663

seq1  CCTGGATGCAGATGCTATGACAGAGTTAGATGTAGAGGTGAGAGCAGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGATGCAGATGCTATGACAGAGTTAGATGTAGAGGTGAGAGCAGAAA  713

seq1  AATAAAGACTTTGTGGCAGAGCTAACACTTATAGAAAGATAGAAAGAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGACTTTGTGGCAGAGCTAACACTTATAGAAAGATAGAAAGAAAG  763

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGA  813

seq1  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATGCAGGGAGGGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGATGCAGGGAGGGAGA  863

seq1  AATCACAAATCCAGACTACATCAAAGTGTCCAGAGAGATCCAAGTAGGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAAATCCAGACTACATCAAAGTGTCCAGAGAGATCCAAGTAGGAC  913

seq1  AATGGAGGAATTC  961
      |||||||||||||
seq2  AATGGAGGAATTC  926

seq1: chr13_100207067_100208202
seq2: B6Ng01-044M05.g_66_1191

seq1  GAATTCTGAGGAAGCCAGGGAGCATGGAGCATAGAATGCTACAGTTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGAAGCCAGGGAGCATGGAGCATAGAATGCTACAGTTTAAG  50

seq1  GAGACCAGAAAAGCAAGCCTCCAGCACAGCTGGACAAGTCCCTCTCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAGAAAAGCAAGCCTCCAGCACAGCTGGACAAGTCCCTCTCCAGA  100

seq1  CAGGGAAAATCTAATCACTCTGGAAAAAAACATCAGCCTGCTGTACACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAAATCTAATCACTCTGGAAAAAAACATCAGCCTGCTGTACACAA  150

seq1  CAAGAGAGAAGGACAAAGACAAGAGCTGGAGAGAGCCCATTAAGGAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAGAAGGACAAAGACAAGAGCTGGAGAGAGCCCATTAAGGAGGCA  200

seq1  GATGGGATAGGTCAGGAGATAGGAGAGATATCACAACATCCTTGGGGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGATAGGTCAGGAGATAGGAGAGATATCACAACATCCTTGGGGCTA  250

seq1  CCCAAGAGAACCACAGCCCCTGTGTTTTCCCATAGTGCAGCTCCAGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGAACCACAGCCCCTGTGTTTTCCCATAGTGCAGCTCCAGGCCT  300

seq1  GTAGGATAAATATCAGGATGAGGACAGGAGTCAAGGGCAACAGGTATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATAAATATCAGGATGAGGACAGGAGTCAAGGGCAACAGGTATCTT  350

seq1  AAGATACCCACTCCATGGTGGTGCTCAATCCACACCTCTGCAGTGAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACCCACTCCATGGTGGTGCTCAATCCACACCTCTGCAGTGAATGG  400

seq1  TGAGACCACTAGGGCTTTGGCAATGCTGGCAGTAGTAAGGACCTGAGGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCACTAGGGCTTTGGCAATGCTGGCAGTAGTAAGGACCTGAGGAC  450

seq1  TAGTTCTTTGAAACTGGGGCTGCTTCCAAATGAACTGGGAAGCCATGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTTTGAAACTGGGGCTGCTTCCAAATGAACTGGGAAGCCATGTTC  500

seq1  ATTGGCAACAGCAGCCACACAGCAAGCCCTATTACAATGAAAGTTTCGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCAACAGCAGCCACACAGCAAGCCCTATTACAATGAAAGTTTCGGT  550

seq1  ATCTTTGTTTCCCCAGTGTATAACCAGATGCAGTACACTAGGTTACATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTTTCCCCAGTGTATAACCAGATGCAGTACACTAGGTTACATTG  600

seq1  CATTAAATTTGGTCAGTTCAATACATGCTGTCTTCCTGCAGCTGGGACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATTTGGTCAGTTCAATACATGCTGTCTTCCTGCAGCTGGGACAA  650

seq1  GTGCCTGCCGATGCTTATCAGACAGAGCCGGTTATCATGGTTCTTCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGCCGATGCTTATCAGACAGAGCCGGTTATCATGGTTCTTCACAG  700

seq1  ATGGATGATGGACATGAGTGGGCGTAATACTGCTTTGGGATATGATTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATGATGGACATGAGTGGGCGTAATACTGCTTTGGGATATGATTGTC  750

seq1  TCTTTTGCTCATTACCTTTCCTGATTAAACGCAGACACACGG-AAAGAGG  799
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTTTTGCTCATTACCTTTCCTGATTAAACGCAGACACACGGAAAAGAGG  800

seq1  AAGGAAGATACAGGAATAAATGGCTTTACTGAAGATATTGCAAAACAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGATACAGGAATAAATGGCTTTACTGAAGATATTGCAAAACAAAT  850

seq1  GATAATTTCTAAACCACGAACTTCTAACTACGTTTTCTTTTTTTGATTGA  899
      ||||||||||||||||||||||||||||||||||||||||||    ||||
seq2  GATAATTTCTAAACCACGAACTTCTAACTACGTTTTCTTTTT---GTTGA  897

seq1  ATGACCTGCTTAGCTAAAGAGGAAATACT-ATAGACAGTGTGTCTCTGGG  948
      |||||||||||||||||||| |||||||| ||||||||||||||||| ||
seq2  ATGACCTGCTTAGCTAAAGA-GAAATACTAATAGACAGTGTGTCTCTTGG  946

seq1  CTTTGGCAAGACATGTAACAGGATCTTGGAACTGTGTGATAAGCAGTATT  998
        ||||| |||||||||||||||||||||||||||||||||||| |||||
seq2  GCTTGGC-AGACATGTAACAGGATCTTGGAACTGTGTGATAAGC-GTATT  994

seq1  ACGTGGAATTATAAGCAGTGGTGTTCCTTAGTGTCAAACAGGAGGAAGAT  1048
      |||||||||||| |||||| |||||||||| |||| ||||||||| ||||
seq2  ACGTGGAATTATTAGCAGT-GTGTTCCTTA-TGTC-AACAGGAGG-AGAT  1040

seq1  CTGCGGTAGGCTGCTCCAAGTTCATTCCTCTGCTGTTGAGTATCGATTGA  1098
      |||  || |  |||  |||| ||||||||||| || ||||||||||||||
seq2  CTGGCGTGGCTTGCCTCAAG-TCATTCCTCTG-TG-TGAGTATCGATTGA  1087

seq1  CTGGGATGAAAATGGAACAG-ACGCGCTCATCAAAGCTG  1136
      |||||||||||||||||||| ||||||||||  ||||||
seq2  CTGGGATGAAAATGGAACAGTACGCGCTCATTCAAGCTG  1126