BAC Information

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BAC

Clone NameB6Ng01-045K09
Chromosome13 (Build37)
Map Location 53,204,866 - 53,330,330
singlet/doubletdoublet
Overlap geneRor2
Upstream geneLOC100040321, Diras2, LOC100040572, Syk, Auh, Nfil3
Downstream geneSptlc1, LOC100040421, Msx2, EG432760, E130119H09Rik, Drd1a, Sfxn1, Hrh2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045K09.bB6Ng01-045K09.g
ACCDH871045DH871046
length1,034821
definitionDH871045|Mus musculus domesticus DNA, BAC clone: B6Ng01-045K09, 5' end.DH871046|Mus musculus domesticus DNA, BAC clone: B6Ng01-045K09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,204,866 - 53,206,060)(53,329,510 - 53,330,330)
sequence
gaattccagaaaagtaggcaaaatacacacgcagtataattaaaaccctt
cacaaaaatacaaaatcgtgctggtttttgtaaaggcacttttttttctc
tctttaatacaaggcactcccaagtgttcagaagcaactctgtcctttgg
actccagcagatggcagcatcgagctcctgctggcctttggctgttaaaa
aagaacacgttcgcagggggccacagagagaaagaaaaactctctccatc
ctccgccagcagggggctcacggagcatctaagctccaaggtgcctctct
gctgcctgtcgcggccatgcctccgcccccagtctctgaaccctccgccc
ataaagcagggcggtgaagatgtagcctgtttctgtgcccaatatcctta
gctcactacccatctaccatcaggataaagcagacagaggcggggtctcc
ctgtcctgtttctgaggtggtcacgctgcagggaccctgcccagggtccc
tgtctgaaatggcctccagccaagtcggcgctgcagcggcagttttatgg
gcacagggtgcaggagatagtaaaaaatctctcacagtctcaggtgggta
ggctcaaaccagcctgccagtccctgggctctggtgatgggcccctcttt
gggacttcacagagccattttgaggtccccatctggtcacagcagggctg
gtgctccaggccccttatattcctcaggcttcaagctggacatgagccgc
ctcggtcacctggagcgtgtcattgtctcccaggagttcagtctcaggga
cagacccctcctcctcctcctctgcttcctgcacagggctctgggccacg
tcttccgcgatgttctgtgcatctcggtgccctcagagagtaagggccgc
cctgtccgccacagatgtatggaggggcgcctggtggacgaacccagtgc
tgggtggagccgcctccctgtggtggtgagtctgcgctggggaccatctg
agagggaccctgcctgtggggcttctgcttgggg
gaattcccagggctcctcctgggccttttaaatgttaagtaatgggttcg
tgacctgtggtgagaagaaagatgcccggcaggtaaagttatctctccct
ttcatctgtttaatctccctgctttgggctacacactgagagcccagcaa
ttacacccttcctacccccatggaaaaccgaatttcttttcttttctttt
ttctttctttttttttttttaaaggagagaagtttattcccgggatggag
ttaggtgtgcatttccagagaagcacctcagaggggcttcctatccctct
tgcagagaaagaccggttaggagggaggcttccacacagcatgggggagg
gaggctgagagggtgcgtggagactgcagcaaagctgcaggtgtctctta
cgtatggggagaggagctcctgtgagtgcagagagcttgctgtgaggtca
tggtacaaacagagcctctgatgaagagagtcgcttgtaaacaaagatgg
caacagagttgaaggtaggtaaaatcagctgtgtaaggcgaatgggcatg
acccacgcccggaagtagtggatcctcccctgttccagtgatcatggctg
tcttttcccccacccccctctgccatcacacatttttggtgagggctctg
ctctcttcaggtcctctcttacccatgcattttggccctctcctttgtgt
cctgagtgacaccccctgagcaatgtcctgggcccaggtggctggagaca
caggctgcccagtggggggatgctcttgagcccccccacctcccacctct
catgccaccttacccctggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_53204866_53206060
seq2: B6Ng01-045K09.b_43_1076

seq1  GAATTCCAGAAAAGTAGGCAAAATACACACGCAGTATAATTAAAACCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAAAGTAGGCAAAATACACACGCAGTATAATTAAAACCCTT  50

seq1  CACAAAAATACAAAATCGTGCTGGTTTTTGTAAAGGCACTTTTTTTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAATACAAAATCGTGCTGGTTTTTGTAAAGGCACTTTTTTTTCTC  100

seq1  TCTTTAATACAAGGCACTCCCAAGTGTTCAGAAGCAACTCTGTCCTTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATACAAGGCACTCCCAAGTGTTCAGAAGCAACTCTGTCCTTTGG  150

seq1  ACTCCAGCAGATGGCAGCATCGAGCTCCTGCTGGCCTTTGGCTGTTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCAGATGGCAGCATCGAGCTCCTGCTGGCCTTTGGCTGTTAAAA  200

seq1  AAGAACACGTTCGCAGGGGGCCACAGAGAGAAAGAAAAACTCTCTCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACACGTTCGCAGGGGGCCACAGAGAGAAAGAAAAACTCTCTCCATC  250

seq1  CTCCGCCAGCAGGGGGCTCACGGAGCATCTAAGCTCCAAGGTGCCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCCAGCAGGGGGCTCACGGAGCATCTAAGCTCCAAGGTGCCTCTCT  300

seq1  GCTGCCTGTCGCGGCCATGCCTCCGCCCCCAGTCTCTGAACCCTCCGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTGTCGCGGCCATGCCTCCGCCCCCAGTCTCTGAACCCTCCGCCC  350

seq1  ATAAAGCAGGGCGGTGAAGATGTAGCCTGTTTCTGTGCCCAATATCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCAGGGCGGTGAAGATGTAGCCTGTTTCTGTGCCCAATATCCTTA  400

seq1  GCTCACTACCCATCTACCATCAGGATAAAGCAGACAGAGGCGGGGTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTACCCATCTACCATCAGGATAAAGCAGACAGAGGCGGGGTCTCC  450

seq1  CTGTCCTGTTTCTGAGGTGGTCACGCTGCAGGGACCCTGCCCAGGGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGTTTCTGAGGTGGTCACGCTGCAGGGACCCTGCCCAGGGTCCC  500

seq1  TGTCTGAAATGGCCTCCAGCCAAGTCGGCGCTGCAGCGGCAGTTTTATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAAATGGCCTCCAGCCAAGTCGGCGCTGCAGCGGCAGTTTTATGG  550

seq1  GCACAGGGTGCAGGAGATAGTAAAAAATCTCTCACAGTCTCAGGTGGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGGTGCAGGAGATAGTAAAAAATCTCTCACAGTCTCAGGTGGGTA  600

seq1  GGCTCAAACCAGCCTGCCAGTCCCTGGGCTCTGGTGATGGGCCCCTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAAACCAGCCTGCCAGTCCCTGGGCTCTGGTGATGGGCCCCTCTTT  650

seq1  GGGACTTCACAGAGCCATTTTGAGGTCCCCATCTGGTCACAGCAGGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTCACAGAGCCATTTTGAGGTCCCCATCTGGTCACAGCAGGGCTG  700

seq1  GTGCTCCAGGCCCCTTATATTCCTCAGGCTTCAAGCTGGACATGAGCCGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCCAGGCCCCTTATATTCCTCAGGCTTCAAGCTGGACATGAGCCGC  750

seq1  CTCGGTCACCTGGAGCGTGTCATTGTCTCCCAGGAGTTCAGTCTCAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTCACCTGGAGCGTGTCATTGTCTCCCAGGAGTTCAGTCTCAGGGA  800

seq1  CAGACCCCTCCTCCTCCTCCTCTGCTTCCTGCACAGGGCTCTGGGCCACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCCTCCTCCTCCTCCTCTGCTTCCTGCACAGGGCTCTGGGCCACG  850

seq1  TCTTCCGCGATGTTCTGTGCATCCTCGGTGCCCTCAGAGAGT-AGGGCCG  899
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  TCTTCCGCGATGTTCTGTGCAT-CTCGGTGCCCTCAGAGAGTAAGGGCCG  899

seq1  CCCTGTCCGCCACAGATGTATTGGAGGGCGCCGTGGT-GACGTAGCCAGT  948
      ||||||||||||||||||||| |  ||||||| |||| |||| | |||||
seq2  CCCTGTCCGCCACAGATGTATGGAGGGGCGCC-TGGTGGACGAACCCAGT  948

seq1  GCT-GGTGGAGCCGCTGCCACTGTGGT-GTGAGCTCGGC-TTGGGGACCA  995
      ||| |||||||||||  || ||||||| ||||| || ||  |||||||||
seq2  GCTGGGTGGAGCCGCCTCC-CTGTGGTGGTGAG-TCTGCGCTGGGGACCA  996

seq1  TCTGAGGGGGCACCTG-CTGTGGGGCCATCTGCATGGGGATCTGGACTGG  1044
      |||||| |||  |||| |||||||| | ||||| |||||           
seq2  TCTGAGAGGGACCCTGCCTGTGGGG-CTTCTGCTTGGGG-----------  1034

seq1  GTAGAAGTTGGGCAGGTAGGCCCCGTATGCCGGTACCGGCTGATAGCCGT  1094
                                                        
seq2  --------------------------------------------------  1034

seq1  TCACCGGGATGTACAGCTGTGCCGGGGGCACCAAGGGTCTGATCTGACCC  1144
                                                        
seq2  --------------------------------------------------  1034

seq1  TTCATGGGGATGAACTGAGGCTGTGGGAAGGGCTGGGCCTTCTGCTTGGG  1194
                                                        
seq2  --------------------------------------------------  1034

seq1  G  1195
       
seq2  -  1034

seq1: chr13_53329510_53330330
seq2: B6Ng01-045K09.g_71_891 (reverse)

seq1  TCCCAGGGGTAAGGTGGCAGTGATGGGGGTGGGAGGTGGGGTGGGCTCAA  50
      ||||||||||||||||||| |||  | |||||||||||||| ||||||||
seq2  TCCCAGGGGTAAGGTGGCA-TGA--GAGGTGGGAGGTGGGG-GGGCTCAA  46

seq1  GAGCATCCCCCAACTGGGCAGCCTGTGTCTCCAGCCACCTGGGCCCAGGC  100
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  GAGCATCCCCCCACTGGGCAGCCTGTGTCTCCAGCCACCTGGGCCCAGGA  96

seq1  CACTGCTCA-GGGGTGTCACTCAGGACACAAAGGAGAGGGCC-AAATGCC  148
      || |||||| |||||||||||||||||||||||||||||||| |||||| 
seq2  CATTGCTCAGGGGGTGTCACTCAGGACACAAAGGAGAGGGCCAAAATGCA  146

seq1  TGGGTAAGAGAGGACCTGAAGAGAGCAGAGCCCTCACC-AAAATGTGTGA  197
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGGTAAGAGAGGACCTGAAGAGAGCAGAGCCCTCACCAAAAATGTGTGA  196

seq1  TGGCAGAGGGGGGTGGGGG-AAAGACAGCCATGATCACTGGAACAGGGGA  246
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGCAGAGGGGGGTGGGGGAAAAGACAGCCATGATCACTGGAACAGGGGA  246

seq1  GGATCCACTACTTCCGGGCGTGGGTCATGCCCATTCGCCTTACACAGCTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCACTACTTCCGGGCGTGGGTCATGCCCATTCGCCTTACACAGCTG  296

seq1  ATTTTACCTACCTTCAACTCTGTTGCCATCTTTGTTTACAAGCGACTCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACCTACCTTCAACTCTGTTGCCATCTTTGTTTACAAGCGACTCTC  346

seq1  TTCATCAGAGGCTCTGTTTGTACCATGACCTCACAGCAAGCTCTCTGCAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGAGGCTCTGTTTGTACCATGACCTCACAGCAAGCTCTCTGCAC  396

seq1  TCACAGGAGCTCCTCTCCCCATACGTAAGAGACACCTGCAGCTTTGCTGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGGAGCTCCTCTCCCCATACGTAAGAGACACCTGCAGCTTTGCTGC  446

seq1  AGTCTCCACGCACCCTCTCAGCCTCCCTCCCCCATGCTGTGTGGAAGCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCCACGCACCCTCTCAGCCTCCCTCCCCCATGCTGTGTGGAAGCCT  496

seq1  CCCTCCTAACCGGTCTTTCTCTGCAAGAGGGATAGGAAGCCCCTCTGAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTAACCGGTCTTTCTCTGCAAGAGGGATAGGAAGCCCCTCTGAGG  546

seq1  TGCTTCTCTGGAAATGCACACCTAACTCCATCCCGGGAATAAACTTCTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTCTGGAAATGCACACCTAACTCCATCCCGGGAATAAACTTCTCT  596

seq1  CCTTTAAAAAAAAAAAAAGAAAGAAAAAAGAAAAGAAAAGAAATTCGGTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAAAAAAAAAAAAGAAAGAAAAAAGAAAAGAAAAGAAATTCGGTT  646

seq1  TTCCATGGGGGTAGGAAGGGTGTAATTGCTGGGCTCTCAGTGTGTAGCCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGGGGTAGGAAGGGTGTAATTGCTGGGCTCTCAGTGTGTAGCCC  696

seq1  AAAGCAGGGAGATTAAACAGATGAAAGGGAGAGATAACTTTACCTGCCGG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGGAGATTAAACAGATGAAAGGGAGAGATAACTTTACCTGCCGG  746

seq1  GCATCTTTCTTCTCACCACAGGTCACGAACCCATTACTTAACATTTAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTCTTCTCACCACAGGTCACGAACCCATTACTTAACATTTAAAA  796

seq1  GGCCCAGGAGGAGCCCTGGGAATTC  821
      |||||||||||||||||||||||||
seq2  GGCCCAGGAGGAGCCCTGGGAATTC  821