BAC Information

Click to search

BAC

Clone NameB6Ng01-046K07
Chromosome13 (Build37)
Map Location 20,900,233 - 20,946,906
singlet/doubletdoublet
Overlap geneAoah
Upstream geneGpr141, LOC432730, Elmo1, LOC100040226, LOC665381, LOC665386
Downstream geneOlfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302, LOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046K07.bB6Ng01-046K07.g
ACCDH871742DH871743
length1,1241,120
definitionDH871742|Mus musculus domesticus DNA, BAC clone: B6Ng01-046K07, 5' end.DH871743|Mus musculus domesticus DNA, BAC clone: B6Ng01-046K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,945,750 - 20,946,906)(20,900,233 - 20,901,361)
sequence
gaattcaaaaggtgcctgtagcacgtttatagaggttataattgagactg
gtctgggagtttctggactgaggatcccagagggtgcagttggggaagga
agagctacagttgaatgttagtttgtaagctgtggcatgagtggcaggtt
ttgtacacacaaacatacacacaagtgccagttgttaggtgttttgagtg
caaagagaaagggtgatgaaatacacccctaaagactatctctgtggtct
ttgcaattcggaccagcacattttacttctcccttctctcattcccccgc
caccaatcacttacacccaaaccagtccccatgtacttacatcctaataa
ggaaatccatataattactatcatagtctataaaatgtggacaataccta
cttcctatgattaactgaattgatgcataggaaacacttggatcagtcat
tagtacactgtaaggaccagaagttagtttatgatggtgcttaagaggat
agtcaacattttaaggtgttttatagagaaggtggtagttgggatgagct
tgtaatgcgagtagacctaataccctaccctactcagcattctaacttag
tttcatcactttaagcatctcaaggcactgttatgtacctacagtgggca
aagatgtctaaaccaaaacctgatttataattcagggctgagtgtcctgt
gtacataaagatgggtgcttcgtagacataaggagatatgaaaacaccag
gtactcatctgctataaacaaagtacagtagtgcataggttgtttccttt
catgattgcatagctgactgggagatacagtcacagaaataaatgaaaat
tcatgatctagaattcaatttatgctgacttcattttctttcttctttct
ttctttctttcttctttcttcttcttcttcttttcttctttgacatgatg
agtagaaattaggctctacatgtagttgagggtcatctatctgttctgaa
taattctacacatgaattcagaataagttttaatataaagagcggaatta
tgtgtgcattcaagtaatgggctattttgggtcactgacacgatgtcaca
gaagcctggggcctagattccttt
gaattctctcacagttgtggaggttgagggtctgaagtaaacggtttgtc
tcctgccttctggggttgcacgtcttcttgttcttagtcttatagctgca
taacccctgcattcatagtcatgtgacctttctcctttgcatgtgtcatt
gtatcttcttgtgagaatactttattgactatgggcctggtctagtcttg
cataaccttatcctactacttgcaccagttccaaataaggcatatgatca
aattccaagaaaaacatgaatttaagggacatcagccaagttcacgagct
gttttcacctgtgagttccataaaatatttggaaggaaataatttcaatg
aaatgtaattaattcctttcataaaataaaagagaaggaaatatatccca
gtttgtgttaggttttgctctagtgttaaacccagacagacaccacaaga
aagagttaacatttcatattgttacacaacattattgtatgaacgtagat
ttttttttaaatctcttaaaacacagaataaattcagcatagcataaaat
taaatgaatgctaggtacccgatgaccaaatctttgctagaaatgctcgg
ttgacttattatctgaatgttgattaatagaatgcactacattagcaaaa
taaagggtatacattaccaatccagcagaaatgtgaattatttgacaaga
tctcttaagatagctcaagaaattatgaaagaaaagtggattcccccaac
ttgataaaaggcagctttgaaaactctgctgctcattgaagattgagcta
tggtttccttcccagatcaagggctaatttcaccctcaccatttccaacg
ccacacacaaaagcatttgttaacatcatatatacaaaatgaaggacata
taatacttcactttctaattttttagctttcacaaatgtagcaatatagt
atagtaagaagtagtattaggtatctaaggtatatttatacatataagaa
aaaaacctcaagacttctgataatgacactgttttttcaggtcaggtgat
tttagttcttcggaaaaactgggaggccaataaagttgtcaggttaagat
ccattccaggtaaatttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20945750_20946906
seq2: B6Ng01-046K07.b_48_1171 (reverse)

seq1  AAAGGAATCTTTAGCCCCCAGGCTTTCCTGTGACAATTCTGTCAGTGACC  50
      |||||||||  ||| ||||||||||  ||||||| ||  ||||||||| |
seq2  AAAGGAATC--TAGGCCCCAGGCTT--CTGTGAC-ATCGTGTCAGTGA-C  44

seq1  CCAAAATAG-CCATTACTCTGAAATGCCACCATAAATCCGCTCTTTTATA  99
      ||||||||| |||||||| || |||||   ||||| ||||||| ||||||
seq2  CCAAAATAGCCCATTACT-TG-AATGCACACATAATTCCGCTC-TTTATA  91

seq1  -TAAAACTGTATTCTTGAATTTCATGTTGGTAGAATTATTCAGAACAGAT  148
       ||||||| ||||| |||| |||||||  |||||||||||||||||||||
seq2  TTAAAACT-TATTC-TGAA-TTCATGT--GTAGAATTATTCAGAACAGAT  136

seq1  AGATGACCCTCAACTTACAATGGTTAGAGCCCTAAATTTTCTACTTCATC  198
      |||||||||||||| ||| |||  ||||| |||||  ||||||| |||||
seq2  AGATGACCCTCAAC-TAC-ATG--TAGAG-CCTAA--TTTCTAC-TCATC  178

seq1  ATGGTACAAAAGAAAGAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  248
      |||  | | ||||||  || |||||           ||||||| ||||||
seq2  ATGTCAAAGAAGAAAAGAAGAAGAA----------GAAGAAAG-AAGAAA  217

seq1  GAAAGAAAGAAAGAAAGAAAGAAAAATGAAGTCAGCATAAATTGAATTCT  298
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAG-AAGAAAG-AAAATGAAGTCAGCATAAATTGAATTCT  265

seq1  AGATCATGAATTTTCATTTATTTCTGTGACTGTATCTCCCAGTCAGCTAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCATGAATTTTCATTTATTTCTGTGACTGTATCTCCCAGTCAGCTAT  315

seq1  GCAATCATGAAAGGAAACAACCTATGCACTACTGTACTTTGTTTATAGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCATGAAAGGAAACAACCTATGCACTACTGTACTTTGTTTATAGCA  365

seq1  GATGAGTACCTGGTGTTTTCATATCTCCTTATGTCTACGAAGCACCCATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTACCTGGTGTTTTCATATCTCCTTATGTCTACGAAGCACCCATC  415

seq1  TTTATGTACACAGGACACTCAGCCCTGAATTATAAATCAGGTTTTGGTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTACACAGGACACTCAGCCCTGAATTATAAATCAGGTTTTGGTTT  465

seq1  AGACATCTTTGCCCACTGTAGGTACATAACAGTGCCTTGAGATGCTTAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCTTTGCCCACTGTAGGTACATAACAGTGCCTTGAGATGCTTAAA  515

seq1  GTGATGAAACTAAGTTAGAATGCTGAGTAGGGTAGGGTATTAGGTCTACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAAACTAAGTTAGAATGCTGAGTAGGGTAGGGTATTAGGTCTACT  565

seq1  CGCATTACAAGCTCATCCCAACTACCACCTTCTCTATAAAACACCTTAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATTACAAGCTCATCCCAACTACCACCTTCTCTATAAAACACCTTAAA  615

seq1  ATGTTGACTATCCTCTTAAGCACCATCATAAACTAACTTCTGGTCCTTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGACTATCCTCTTAAGCACCATCATAAACTAACTTCTGGTCCTTAC  665

seq1  AGTGTACTAATGACTGATCCAAGTGTTTCCTATGCATCAATTCAGTTAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTAATGACTGATCCAAGTGTTTCCTATGCATCAATTCAGTTAAT  715

seq1  CATAGGAAGTAGGTATTGTCCACATTTTATAGACTATGATAGTAATTATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGAAGTAGGTATTGTCCACATTTTATAGACTATGATAGTAATTATA  765

seq1  TGGATTTCCTTATTAGGATGTAAGTACATGGGGACTGGTTTGGGTGTAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCCTTATTAGGATGTAAGTACATGGGGACTGGTTTGGGTGTAAG  815

seq1  TGATTGGTGGCGGGGGAATGAGAGAAGGGAGAAGTAAAATGTGCTGGTCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGTGGCGGGGGAATGAGAGAAGGGAGAAGTAAAATGTGCTGGTCC  865

seq1  GAATTGCAAAGACCACAGAGATAGTCTTTAGGGGTGTATTTCATCACCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCAAAGACCACAGAGATAGTCTTTAGGGGTGTATTTCATCACCCT  915

seq1  TTCTCTTTGCACTCAAAACACCTAACAACTGGCACTTGTGTGTATGTTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTTGCACTCAAAACACCTAACAACTGGCACTTGTGTGTATGTTTG  965

seq1  TGTGTACAAAACCTGCCACTCATGCCACAGCTTACAAACTAACATTCAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACAAAACCTGCCACTCATGCCACAGCTTACAAACTAACATTCAAC  1015

seq1  TGTAGCTCTTCCTTCCCCAACTGCACCCTCTGGGATCCTCAGTCCAGAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCTCTTCCTTCCCCAACTGCACCCTCTGGGATCCTCAGTCCAGAAA  1065

seq1  CTCCCAGACCAGTCTCAATTATAACCTCTATAAACGTGCTACAGGCACCT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGACCAGTCTCAATTATAACCTCTATAAACGTGCTACAGGCACCT  1115

seq1  TTTGAATTC  1157
      |||||||||
seq2  TTTGAATTC  1124

seq1: chr13_20900233_20901361
seq2: B6Ng01-046K07.g_64_1183

seq1  GAATTCTCTCACAGTTGTGGAGGTTGAGGGTCTGAAGTAAACGGTTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCACAGTTGTGGAGGTTGAGGGTCTGAAGTAAACGGTTTGTC  50

seq1  TCCTGCCTTCTGGGGTTGCACGTCTTCTTGTTCTTAGTCTTATAGCTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTTCTGGGGTTGCACGTCTTCTTGTTCTTAGTCTTATAGCTGCA  100

seq1  TAACCCCTGCATTCATAGTCATGTGACCTTTCTCCTTTGCATGTGTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCTGCATTCATAGTCATGTGACCTTTCTCCTTTGCATGTGTCATT  150

seq1  GTATCTTCTTGTGAGAATACTTTATTGACTATGGGCCTGGTCTAGTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTCTTGTGAGAATACTTTATTGACTATGGGCCTGGTCTAGTCTTG  200

seq1  CATAACCTTATCCTACTACTTGCACCAGTTCCAAATAAGGCATATGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCTTATCCTACTACTTGCACCAGTTCCAAATAAGGCATATGATCA  250

seq1  AATTCCAAGAAAAACATGAATTTAAGGGACATCAGCCAAGTTCACGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAGAAAAACATGAATTTAAGGGACATCAGCCAAGTTCACGAGCT  300

seq1  GTTTTCACCTGTGAGTTCCATAAAATATTTGGAAGGAAATAATTTCAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACCTGTGAGTTCCATAAAATATTTGGAAGGAAATAATTTCAATG  350

seq1  AAATGTAATTAATTCCTTTCATAAAATAAAAGAGAAGGAAATATATCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAATTAATTCCTTTCATAAAATAAAAGAGAAGGAAATATATCCCA  400

seq1  GTTTGTGTTAGGTTTTGCTCTAGTGTTAAACCCAGACAGACACCACAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTTAGGTTTTGCTCTAGTGTTAAACCCAGACAGACACCACAAGA  450

seq1  AAGAGTTAACATTTCATATTGTTACACAACATTATTGTATGAACGTAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTAACATTTCATATTGTTACACAACATTATTGTATGAACGTAGAT  500

seq1  TTTTTTTTAAATCTCTTAAAACACAGAATAAATTCAGCATAGCATAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAATCTCTTAAAACACAGAATAAATTCAGCATAGCATAAAAT  550

seq1  TAAATGAATGCTAGGTACCCGATGACCAAATCTTTGCTAGAAATGCTCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAATGCTAGGTACCCGATGACCAAATCTTTGCTAGAAATGCTCGG  600

seq1  TTGACTTATTATCTGAATGTTGATTAATAGAATGCACTACATTAGCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTATTATCTGAATGTTGATTAATAGAATGCACTACATTAGCAAAA  650

seq1  TAAAGGGTATACATTACCAATCCAGCAGAAATGTGAATTATTTGACAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGTATACATTACCAATCCAGCAGAAATGTGAATTATTTGACAAGA  700

seq1  TCTCTTAAGATAGCTCAAGAAATTATGAAAGAAAAGTGGATTCCCCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAAGATAGCTCAAGAAATTATGAAAGAAAAGTGGATTCCCCCAAC  750

seq1  TTGATAAAAGGCAGCTTTGAAAACTCTGCTGCTCATTGAAGATTGAGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAAAGGCAGCTTTGAAAACTCTGCTGCTCATTGAAGATTGAGCTA  800

seq1  TGGTTTCCTTCCCAGATCAAGGGCTAATTTCACCCTCACCATTTCCAACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCTTCCCAGATCAAGGGCTAATTTCACCCTCACCATTTCCAACG  850

seq1  CCACACACAAAAGCATTTGTTAACATCATATATACAAAATGAAAGGACAA  900
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  CCACACACAAAAGCATTTGTTAACATCATATATACAAAATG-AAGGAC-A  898

seq1  TATAAATACTTCACTTTCTTAATTTTTTTAGCTTTCACAAATGTAAGCAA  950
      ||| |||||||||||||||  | ||||||||||||||||||||| |||||
seq2  TAT-AATACTTCACTTTCT--AATTTTTTAGCTTTCACAAATGT-AGCAA  944

seq1  AATAATAAGTATAGTTAAGAAGTAAGTATTAGTTAATCTAAGGGTATATT  1000
       ||    ||||||| |||||||| |||||||| | |||||| ||||||||
seq2  TAT----AGTATAG-TAAGAAGT-AGTATTAGGT-ATCTAA-GGTATATT  986

seq1  TATACATATAAGAAAAAAACCTCAAAGACTTCCTTGATTAATGACACTG-  1049
      ||||||||||||||||||||||| ||||||||  ||| ||||||||||| 
seq2  TATACATATAAGAAAAAAACCTC-AAGACTTC--TGA-TAATGACACTGT  1032

seq1  TTTTTCAAGTCAGTTGATTTTTAGTTCTTTCAGAAAAACTAGAGAAGACA  1099
      ||||||| ||||| ||| ||||||||| ||| |||||||| | || | ||
seq2  TTTTTCAGGTCAGGTGA-TTTTAGTTC-TTCGGAAAAACT-GGGAGGCCA  1079

seq1  ATAAAGTTGTCAGGTTATAGATC------------ATTTCAA  1129
      ||||||||||||||||| |||||            |||||||
seq2  ATAAAGTTGTCAGGTTA-AGATCCATTCCAGGTAAATTTCAA  1120