BAC Information

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BAC

Clone NameB6Ng01-046P11
Chromosome13 (Build37)
Map Location 102,747,427 - 102,862,246
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
Downstream geneCd180, Mast4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046P11.bB6Ng01-046P11.g
ACCDH871961DH871962
length8581,085
definitionDH871961|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P11, 5' end.DH871962|Mus musculus domesticus DNA, BAC clone: B6Ng01-046P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,861,390 - 102,862,246)(102,747,427 - 102,748,521)
sequence
gaattcttactggagtgcattggagaataagcaggaagtgggcacacagc
agcaaaaacacatgtctttctagtgctttgactgtgtaaaggcatggcag
aagaaagaagaaatattgatgagaaatttagtaagacatttttaaggata
tttagggggagtggtttgcttgttgcttgttttgtgtttgttttgttttg
caggtgagagattctagatagcttctgacaaatgacaactttctattact
gggcatagtgtcagtactgtagagtcatgaggctgtactttttgcaggga
ttaaccactctgtcattgtaaattttaatatggtgcttttcatccattaa
tcataccagtagttacaatgagaagtaaatagttactgtcacagagtgag
ctgtattgtgtctgaccaagaaatgtcatctgtatcaaaacttatcattg
tttctgatgttatagtattgaccatacaagacagtttcaaatactatatg
cactggttttcacgaaatcactaatcaatgtgctaagtaaaaccataagg
tctgcctgcacatttgttggaaagtgacaacttttgtctttgaaagaatg
ttactttaacagatgtcagacaaatttaatttaaaaaattgagataagct
ttgtgaagataataggaatacattcataaatatatttgggcaaaacaata
tagaggggtagatgtaggcagaactgagaaaaaagcagaatcattgaaga
taacttcccagaagcaaatccaaaattattcagggaaagtttgagatcag
aacataactatttgaatcacaagtgcattatttattttaactgaatgtgt
gtgtgtgt
gaattcattacattgcacacctgtaatcccagcactcaggagggctaggg
caggaggcttgtggatgtgaggagaccacaaactacatagctaaatagtg
aagtccctgtctcacaagcaaccaagcaaccaagcaaccaaccaaaactc
cacaactgatccactttaccatgtctctttgcgtttgagggactggctga
tattctaactaacaaaaggtatactaggaaaaatgaaagccaagaaagca
aagctagatatgggatatattggaagttttataaccttgatgaaatgggt
gttggagatatatccaatcagatgagaagtgagcggttttcaaccagtca
aagactgaagaggattgaagaggaagtgtgcatcatgggaactattctag
agaaagctcaggaaacttctagtgccattggtgaaagccatcgtctctct
gaggatttggaggggcccattgtgaagcaaactagcggtattgtgctgtg
acacaattttgatcaataagttacatgcagtactccagagatttttttga
atttcttatctcatatttagcacagatatgaaataataaagaatatgaaa
tgtaagataaggatttttaaaattattttagcttttattttcaaagctat
tttaagttcaagttttcattttctcactgctgttttctatgtcaaatttg
gtttttgtttaggtggatttagtttatgctgtctattttattttttattt
tttggtattcactaatgccacatgataagaacatgttatatactcatagg
ttacatatgtaaaatacttcaaatgaggccacatttaaatagaactttga
tgcttgcaagtatatgtgtaaacaagtctcatatagctctacatttccat
gggtattttttcttccatattgctgtattttaatatttaaatatgtcagc
tgtcttaaaaaattgttatctttgaaaaatactatagaatttcatgatcc
cagacattctgtctactgatctctatagaagcaacctttatctctaataa
aaagttcttgtcacgagttgattttcttaaggaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_102861390_102862246
seq2: B6Ng01-046P11.b_44_901 (reverse)

seq1  ACACACACACACATTCAGTTAAAATAAATAATGCACTTGTGATTCAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACATTCAGTTAAAATAAATAATGCACTTGTGATTCAAATA  50

seq1  GTTATGTTCTGATCTCAAAC-TTCCCTGAATAATTTTGGATTTGCTTCTG  99
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTATGTTCTGATCTCAAACTTTCCCTGAATAATTTTGGATTTGCTTCTG  100

seq1  GGAAGTTATCTTCAATGATTCTGCTTTTTTCTCAGTTCTGCCTACATCTA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTATCTTCAATGATTCTGCTTTTTTCTCAGTTCTGCCTACATCTA  150

seq1  CCCCTCTATATTGTTTTGCCCAAATATATTTATGAATGTATTCCTATTAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTATATTGTTTTGCCCAAATATATTTATGAATGTATTCCTATTAT  200

seq1  CTTCACAAAGCTTATCTCAATTTTTTAAATTAAATTTGTCTGACATCTGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAAAGCTTATCTCAATTTTTTAAATTAAATTTGTCTGACATCTGT  250

seq1  TAAAGTAACATTCTTTCAAAGACAAAAGTTGTCACTTTCCAACAAATGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTAACATTCTTTCAAAGACAAAAGTTGTCACTTTCCAACAAATGTG  300

seq1  CAGGCAGACCTTATGGTTTTACTTAGCACATTGATTAGTGATTTCGTGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGACCTTATGGTTTTACTTAGCACATTGATTAGTGATTTCGTGAA  350

seq1  AACCAGTGCATATAGTATTTGAAACTGTCTTGTATGGTCAATACTATAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTGCATATAGTATTTGAAACTGTCTTGTATGGTCAATACTATAAC  400

seq1  ATCAGAAACAATGATAAGTTTTGATACAGATGACATTTCTTGGTCAGACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAAACAATGATAAGTTTTGATACAGATGACATTTCTTGGTCAGACA  450

seq1  CAATACAGCTCACTCTGTGACAGTAACTATTTACTTCTCATTGTAACTAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAGCTCACTCTGTGACAGTAACTATTTACTTCTCATTGTAACTAC  500

seq1  TGGTATGATTAATGGATGAAAAGCACCATATTAAAATTTACAATGACAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATGATTAATGGATGAAAAGCACCATATTAAAATTTACAATGACAGA  550

seq1  GTGGTTAATCCCTGCAAAAAGTACAGCCTCATGACTCTACAGTACTGACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAATCCCTGCAAAAAGTACAGCCTCATGACTCTACAGTACTGACA  600

seq1  CTATGCCCAGTAATAGAAAGTTGTCATTTGTCAGAAGCTATCTAGAATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCCCAGTAATAGAAAGTTGTCATTTGTCAGAAGCTATCTAGAATCT  650

seq1  CTCACCTGCAAAACAAAACAAACACAAAACAAGCAACAAGCAAACCACTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCTGCAAAACAAAACAAACACAAAACAAGCAACAAGCAAACCACTC  700

seq1  CCCCTAAATATCCTTAAAAATGTCTTACTAAATTTCTCATCAATATTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAAATATCCTTAAAAATGTCTTACTAAATTTCTCATCAATATTTCT  750

seq1  TCTTTCTTCTGCCATGCCTTTACACAGTCAAAGCACTAGAAAGACATGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTCTGCCATGCCTTTACACAGTCAAAGCACTAGAAAGACATGTG  800

seq1  TTTTTGCTGCTGTGTGCCCACTTCCTGCTTATTCTCCAATGCACTCCAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTGCTGTGTGCCCACTTCCTGCTTATTCTCCAATGCACTCCAGT  850

seq1  AAGAATTC  857
      ||||||||
seq2  AAGAATTC  858

seq1: chr13_102747427_102748521
seq2: B6Ng01-046P11.g_69_1153

seq1  GAATTCATTACATTGCACACCTGTAATCCCAGCACTCAGGAGGGCTAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACATTGCACACCTGTAATCCCAGCACTCAGGAGGGCTAGGG  50

seq1  CAGGAGGCTTGTGGATGTGAGGAGACCACAAACTACATAGCTAAATAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCTTGTGGATGTGAGGAGACCACAAACTACATAGCTAAATAGTG  100

seq1  AAGTCCCTGTCTCACAAGCAACCAAGCAACCAAGCAACCAACCAAAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTGTCTCACAAGCAACCAAGCAACCAAGCAACCAACCAAAACTC  150

seq1  CACAACTGATCCACTTTACCATGTCTCTTTGCGTTTGAGGGACTGGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTGATCCACTTTACCATGTCTCTTTGCGTTTGAGGGACTGGCTGA  200

seq1  TATTCTAACTAACAAAAGGTATACTAGGAAAAATGAAAGCCAAGAAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAACTAACAAAAGGTATACTAGGAAAAATGAAAGCCAAGAAAGCA  250

seq1  AAGCTAGATATGGGATATATTGGAAGTTTTATAACCTTGATGAAATGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGATATGGGATATATTGGAAGTTTTATAACCTTGATGAAATGGGT  300

seq1  GTTGGAGATATATCCAATCAGATGAGAAGTGAGCGGTTTTCAACCAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGAGATATATCCAATCAGATGAGAAGTGAGCGGTTTTCAACCAGTCA  350

seq1  AAGACTGAAGAGGATTGAAGAGGAAGTGTGCATCATGGGAACTATTCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGAAGAGGATTGAAGAGGAAGTGTGCATCATGGGAACTATTCTAG  400

seq1  AGAAAGCTCAGGAAACTTCTAGTGCCATTGGTGAAAGCCATCGTCTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTCAGGAAACTTCTAGTGCCATTGGTGAAAGCCATCGTCTCTCT  450

seq1  GAGGATTTGGAGGGGCCCATTGTGAAGCAAACTAGCGGTATTGTGCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTTGGAGGGGCCCATTGTGAAGCAAACTAGCGGTATTGTGCTGTG  500

seq1  ACACAATTTTGATCAATAAGTTACATGCAGTACTCCAGAGATTTTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTTTGATCAATAAGTTACATGCAGTACTCCAGAGATTTTTTTGA  550

seq1  ATTTCTTATCTCATATTTAGCACAGATATGAAATAATAAAGAATATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATCTCATATTTAGCACAGATATGAAATAATAAAGAATATGAAA  600

seq1  TGTAAGATAAGGATTTTTAAAATTATTTTAGCTTTTATTTTCAAAGCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGATAAGGATTTTTAAAATTATTTTAGCTTTTATTTTCAAAGCTAT  650

seq1  TTTAAGTTCAAGTTTTCATTTTCTCACTGCTGTTTTCTATGTCAAATTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTTCAAGTTTTCATTTTCTCACTGCTGTTTTCTATGTCAAATTTG  700

seq1  GTTTTTGTTTAGGTGGATTTAGTTTATGCTGTCTATTTTATTTTTTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTAGGTGGATTTAGTTTATGCTGTCTATTTTATTTTTTATTT  750

seq1  TTTGGTATTCACTAATGCCACATGATAAGAACATGTTATATACTCATAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTATTCACTAATGCCACATGATAAGAACATGTTATATACTCATAGG  800

seq1  TTACATATGTAAAATACTTCAAATGAGGCCACATTTAAATAGAACTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATGTAAAATACTTCAAATGAGGCCACATTTAAATAGAACTTTGA  850

seq1  TGCTTGCAAGTATATGTGTAAACAAGTCTCATATAAGCTCTACA-TTCCA  899
      |||||||||||||||||||||||||||||||||| ||||||||| |||||
seq2  TGCTTGCAAGTATATGTGTAAACAAGTCTCATAT-AGCTCTACATTTCCA  899

seq1  TGGGTAATTTTTTCTTCCATATTGCTGTATTTT-ATATTT-AATATGTCA  947
      ||||| ||||||||||||||||||||||||||| |||||| |||||||||
seq2  TGGGT-ATTTTTTCTTCCATATTGCTGTATTTTAATATTTAAATATGTCA  948

seq1  GCTGTCTTAAAAAAATGTTATCTTTGAAAAATAACTATAGAAATTTCATG  997
      |||||||||||||| ||||||||||||||||| ||||||| |||||||||
seq2  GCTGTCTTAAAAAATTGTTATCTTTGAAAAAT-ACTATAG-AATTTCATG  996

seq1  ATCCCCAGACATTCTGGTCTACTGATCTCCTATTAGAAGCAAACCTTTTA  1047
      || |||||||||||| |||||||||||| ||| |||||||||  | ||||
seq2  AT-CCCAGACATTCT-GTCTACTGATCT-CTA-TAGAAGCAA--CCTTTA  1040

seq1  TCTCTAATAAAAAAGTTCTTGTCAACAGAGTTGA-TTTCTTAGGGGACA  1095
      |||||||| |||||||||||||||   ||||||| |||||||  |||||
seq2  TCTCTAAT-AAAAAGTTCTTGTCA--CGAGTTGATTTTCTTA-AGGACA  1085