BAC Information

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BAC

Clone NameB6Ng01-047L10
Chromosome13 (Build37)9 (Build37)
Map Location 62,218,051 - 62,219,09462,195,311 - 62,195,732
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCtsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444
Downstream geneEG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047L10.bB6Ng01-047L10.g
ACCDH872499DH872500
length1,042893
definitionDH872499|Mus musculus domesticus DNA, BAC clone: B6Ng01-047L10, 5' end.DH872500|Mus musculus domesticus DNA, BAC clone: B6Ng01-047L10, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(62,218,051 - 62,219,094)(62,195,311 - 62,195,732)
sequence
gaattcaggaccttcagaagttcttgtaactgctgagccatctctccagc
cctgccttctacttttcaaagttagtacagctacgtagatttttttcagc
atatttgccttttttaagactcaacaattgatttcactttttaaaaaaat
tatttattttcagcttaaaacccagtatcagcccctcttctccaaccacc
ctctcgcagctcctctccacattcccttttgagatggaggaaacagtcct
gtgtatgatcctcaactctgccaccccctcaacccctctaccttgaacac
atcattctttacaggactaggcacattttctcactgaggccagatatgac
agcccagttagggtaatggaatccacaggcaggcatcaaatcagagacag
ccaccactatagttgttggggaatccacattaaaaccaatatgtacctct
gttacatatatgagaaggggcctaggtccagttcatgctcacaatttgga
tggttgttcagtctctgggatccatcaagattccagggtagtagattcta
ttggtcttcctgtggattccctatcttctttggatccctcaatcttttcc
tgaactcttctaaacacatctctgcatgtatttctgttagctgttcatta
gagtctctcagagaagaggtttgctagtatcctgtcagctagcataacag
gatatcattaatactgtgagggattggttcttgcccatgggatggttctc
agtttgggccagttatgattgaccacttcttccttctttgctctcttctc
cctatttgtcttatagacagggcagattttataacgaagtttgtgtgtgt
gtgtgttgtatacacacacatatatatatttagagagagagacagactga
gatggacagagaaagtagagattagagttcattcagcacaggggagggga
gtaagaaggtagtagagaatagacaaggtcagaaaagaacagaggagtag
agtctgccattacactggagaaagatggggaaaggaaggggg
gaattcaggactggaactcaagcaggtcagaaagcaggagctgatgctga
ggccatggagagatgttctttactggcttgcctcccctggcttgctcagc
ttgctttcttatagaacccaagactaccagcccagagatggcaccaccca
caaggggacctccccacttgatcactaattgagaaaatgccttacagctg
gatttcatggatgcatttccccaactgaagctcctttctctgtgataact
ccagtctgtgtcaagtggacacaaaactagctggcacaccaacaaagctg
aagaacaagacgaaatccttggggctggcaagatggctcagagggtaaga
gcactgactgctcttccgagggtcatgagttcaaattccagcaaccacat
ggtggctcacaaccacccatgataagatctgataccctcttctggtgtgt
ctgaagacagctactgttgggaacagggggccctgaggaagaggggaagg
gaagacccacaccccgccagagttccacccatgctctggttagtcaggca
tgggagggctgccagatgctttccactcatccctgggagggcatttaagc
ctctgacccactcttgggggttgggggggctaagaggcagccctacctgg
gagccccgggctactttgctaaagccaccagggttatgggagagaaggac
gagggaagagaggttcccaacaccagcgaagagtgagtgcagccttaatg
agcagagactgtctatggttttagagctttatggtagaaaggcgagagag
agagagagaaagagagagagagagagagagagagagagagagagagagtt
acacggctaaaagagaaagaatattataagggagagaggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62218051_62219094
seq2: B6Ng01-047L10.b_47_1088

seq1  GAATTCAGGACCTTCAGAAGTTCTTGTAACTGCTGAGCCATCTCTCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGACCTTCAGAAGTTCTTGTAACTGCTGAGCCATCTCTCCAGC  50

seq1  CCTGCCTTCTACTTTTCAAAGTTAGTACAGCTACGTAGATTTTTTTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTCTACTTTTCAAAGTTAGTACAGCTACGTAGATTTTTTTCAGC  100

seq1  ATATTTGCCTTTTTTAAGACTCAACAATTGATTTCACTTTTTAAAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCCTTTTTTAAGACTCAACAATTGATTTCACTTTTTAAAAAAAT  150

seq1  TATTTATTTTCAGCTTAAAACCCAGTATCAGCCCCTCTTCTCCAACCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTCAGCTTAAAACCCAGTATCAGCCCCTCTTCTCCAACCACC  200

seq1  CTCTCGCAGCTCCTCTCCACATTCCCTTTTGAGATGGAGGAAACAGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGCAGCTCCTCTCCACATTCCCTTTTGAGATGGAGGAAACAGTCCT  250

seq1  GTGTATGATCCTCAACTCTGCCACCCCCTCAACCCCTCTACCTTGAACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGATCCTCAACTCTGCCACCCCCTCAACCCCTCTACCTTGAACAC  300

seq1  ATCATTCTTTACAGGACTAGGCACATTTTCTCACTGAGGCCAGATATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTTTACAGGACTAGGCACATTTTCTCACTGAGGCCAGATATGAC  350

seq1  AGCCCAGTTAGGGTAATGGAATCCACAGGCAGGCATCAAATCAGAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTTAGGGTAATGGAATCCACAGGCAGGCATCAAATCAGAGACAG  400

seq1  CCACCACTATAGTTGTTGGGGAATCCACATTAAAACCAATATGTACCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTATAGTTGTTGGGGAATCCACATTAAAACCAATATGTACCTCT  450

seq1  GTTACATATATGAGAAGGGGCCTAGGTCCAGTTCATGCTCACAATTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATATATGAGAAGGGGCCTAGGTCCAGTTCATGCTCACAATTTGGA  500

seq1  TGGTTGTTCAGTCTCTGGGATCCATCAAGATTCCAGGGTAGTAGATTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTTCAGTCTCTGGGATCCATCAAGATTCCAGGGTAGTAGATTCTA  550

seq1  TTGGTCTTCCTGTGGATTCCCTATCTTCTTTGGATCCCTCAATCTTTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTTCCTGTGGATTCCCTATCTTCTTTGGATCCCTCAATCTTTTCC  600

seq1  TGAACTCTTCTAAACACATCTCTGCATGTATTTCTGTTAGCTGTTCATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTTCTAAACACATCTCTGCATGTATTTCTGTTAGCTGTTCATTA  650

seq1  GAGTCTCTCAGAGAAGAGGTTTGCTAGTATCCTGTCAGCTAGCATAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCTCAGAGAAGAGGTTTGCTAGTATCCTGTCAGCTAGCATAACAG  700

seq1  GATATCATTAATACTGTGAGGGATTGGTTCTTGCCCATGGGATGGTTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCATTAATACTGTGAGGGATTGGTTCTTGCCCATGGGATGGTTCTC  750

seq1  AGTTTGGGCCAGTTATGATTGACCACTTCTTCCTTCTTTGCTCTCTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGGCCAGTTATGATTGACCACTTCTTCCTTCTTTGCTCTCTTCTC  800

seq1  CCTATTTGTCTTATAGACAGGGCAGATTTTATAACGAAGTTTGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTGTCTTATAGACAGGGCAGATTTTATAACGAAGTTTGTGTGTGT  850

seq1  GTGTG-TGTATACACACACATATATATATATAGAGAGAGAGACAGACAGA  899
      ||||| ||||||||||||||||||||||| ||||||||||||||||| ||
seq2  GTGTGTTGTATACACACACATATATATATTTAGAGAGAGAGACAGACTGA  900

seq1  GATAGACAGAGAAAGTAGAGAATAGAGTTCATTCAGCACAGGGGAGGGGA  949
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GATGGACAGAGAAAGTAGAGATTAGAGTTCATTCAGCACAGGGGAGGGGA  950

seq1  GTTAAGAAGGTAGTAGAG-ATAGACAAGGGCAGAGAGAGAACAGAGGAGT  998
      | |||||||||||||||| |||||||||| |||| | |||||||||||||
seq2  G-TAAGAAGGTAGTAGAGAATAGACAAGGTCAGA-AAAGAACAGAGGAGT  998

seq1  AGAGGCTGGCCATGAGCACTGGAGAGAGATGGGGAGAGGAATGGGG  1044
      |||| || ||||| | ||||||||| ||||||||| ||||| ||||
seq2  AGAGTCT-GCCATTA-CACTGGAGAAAGATGGGGAAAGGAAGGGGG  1042

seq1: chr9_62195311_62195732
seq2: B6Ng01-047L10.g_444_959 (reverse)

seq1  CTCTCCTCTCTCCCTTCTA----------TGTCGGAGCCCAGGGCTTGTT  40
      |||||||||||||||| ||          | |   ||||  |    | | 
seq2  CTCTCCTCTCTCCCTTATAATATTCTTTCTCTTTTAGCCGTGTAACTCTC  50

seq1  GCTGAGTGGCTGT-------GGTGGGGGTCTGATGGAATGAACTTGGCCT  83
       ||   |  || |         |     |||  |    |   ||    ||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCT-CTCTCTCTCT  99

seq1  AG-CATTCTGGCCTGAA-TTCT--GACC--TGAGAGAAGCAGCTCATT--  125
       | | ||||  | | ||  |||   |||   || ||   | |||||||  
seq2  CGCCTTTCTACCATAAAGCTCTAAAACCATAGACAGTCTCTGCTCATTAA  149

seq1  -GCT--ACGGTGTCTAAAAGGGTGTT-----------TTCCTTGGAGC--  159
       |||  ||    |||     ||||||           |||| | |  |  
seq2  GGCTGCACTCACTCTTCGCTGGTGTTGGGAACCTCTCTTCCCTCGTCCTT  199

seq1  ATCCCCTTTTAGGCT-GTGTCTCTTGGGACCTA--------CTCTCCA--  198
       || ||  | |  || ||| || | |  |  ||        ||| |||  
seq2  CTCTCCCATAACCCTGGTGGCTTTAGCAAAGTAGCCCGGGGCTC-CCAGG  248

seq1  TCGG--TG---CTCAGCACCTGCTTCCC---ATAG------ACAGG--TA  232
      | ||  ||   || ||| ||  |  |||   | ||      | |||  ||
seq2  TAGGGCTGCCTCTTAGCCCCCCCAACCCCCAAGAGTGGGTCAGAGGCTTA  298

seq1  A-------------GAAGA----AAAACATGAACCAGACTTGAGTTTTTT  265
      |             || ||    ||| |||    ||| | |    |   |
seq2  AATGCCCTCCCAGGGATGAGTGGAAAGCATCTGGCAGCCCTCCCATGCCT  348

seq1  TTTTAAACATATTGATTTTTAAAAATTT-------TTTAGATAT---ATT  305
         ||| || |   ||   |  || | |       | | | | |    ||
seq2  GACTAACCAGA-GCATGGGTGGAACTCTGGCGGGGTGTGGGTCTTCCCTT  397

seq1  TATTTTTATTTTATGTATATGAGTAC---ACTGTCACTGTCTTCAGACAC  352
          | |   | | |       || |   || ||  ||||||||||||||
seq2  CCCCTCTTCCTCAGGGCCCCCTGTTCCCAACAGTAGCTGTCTTCAGACAC  447

seq1  ACCAGAAGAGGGCATCAGACCCCCATTACAGATGGTTGTGAGCCACCATG  402
      |||||||||||| ||||||  |  || |  | ||||||||||||||||||
seq2  ACCAGAAGAGGGTATCAGA-TCTTATCATGGGTGGTTGTGAGCCACCATG  496

seq1  TGGTTGCTGGGAATTGAACT  422
      |||||||||| | |||||||
seq2  TGGTTGCTGGAATTTGAACT  516