BAC Information

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BAC

Clone NameB6Ng01-047M20
Chromosome11 (Build37)13 (Build37)
Map Location 56,898,465 - 56,898,916103,742,899 - 103,744,016
singlet/doubletsingletsinglet
Overlap geneGria1
Upstream geneLOC100040816, LOC624168
Downstream geneLOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047M20.bB6Ng01-047M20.g
ACCDH872561DH872562
length1041,076
definitionDH872561|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M20, 5' end.DH872562|Mus musculus domesticus DNA, BAC clone: B6Ng01-047M20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(56,898,465 - 56,898,916)(103,742,899 - 103,744,016)
sequence
gaattcaattcccagcaaccacatggtgtggctcacaactatctataatg
agatccaataccctctctggtgtttctgaaaacagctacagtgtgtgtgt
gtgc
gaattctttgagaatttcatccaatatattttgattacatccgtgcccca
ctctttgccctgattcctcatccaagttgtttcacgcgaaaatctcggga
gaacttttcatatgggagtcaggcaagctataacccaagaccagtgatgt
tcccgaagatgcattgcatggaaggagcaacccagggagcaaaatctacc
aatgcccaggagggcaccaattcgacaggaggttcccatgtgtgacatgg
gtgggccccgaggactcaaagataaagcagtcctgacaggccctggggtg
cgcttacctccagaagtgaaaggtcaagagaggactacaggggctgcccg
ggctggatggggtgggactcaggctccttggagtgagactgaaagttaaa
ataacatcattccgagtgggagaaatgattgcagtacaaatagcacagct
cactggagggatgagctcccctcgggcccaatcaccaggacctgattacc
aacagcatcaggtcatcatctaatcacttgcccctttcggctctagagta
cagaataaggaggcaacttcctgcggaaaattgcatttaaaaaccacggc
tgccatttttctttgagccttttctttgtcacaaagcaactggtctgata
tcgccatagcgatttttttttttctgtgcgtcaaagacaatctaatgtta
ttttctatggaatatacattgactataagctttctacattgggaatcacg
gatgagtctagagcagaagtagagggaagtggtcatcagacaatgtagat
aaacaggttaaaatccttgacgttttagacagcagacattcacatgttca
tgtaagacagatgtgttcttaaatactgagagaagcagatcttcctttag
caatgaccagatatttgttctgtgtgttgctgttttgttgttcattttcc
tagcttaggcatgtacaggttcatcatgcgtatatttgtattaaaaaaaa
actcgaaaattataagagtgttctttagactagttttatcgagaattctt
ctttccttttttttacccaatcagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_56898465_56898916
seq2: B6Ng01-047M20.b_48_148 (reverse)

seq1  GCACACACACACATATTTGGGCTTTCTAGCTTCATCTTCATAAAAAACAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGTCAAAAGAAGTGTCAGCACCGGCCCCTATTGTCAAAGGCCATGCTGAA  100
                                                        
seq2  --------------------------------------------------  0

seq1  GACAGGCAGAGCCAGTGTGTCCACCTTCACAGAAGGCTGACACCCTGCAC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGACATTGTGCTGAGCAGTGGGACTCACTCATGTCACCTACTGGGCTCTA  200
                                                        
seq2  --------------------------------------------------  0

seq1  TACATGTTTGAAGAACACTTCCAGTTCCGAGATCTGTAAGTTTGGAGCCA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAATTGCCTTAGAGCAGTGATTACTTGCTGTTTGTCTGTCTGTCTTTC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TACCTTCCTTCTTTTATTTTTTTCAAAAAAGATTTTACACACACACACAC  350
                                                 |||||||
seq2  ------------------------------------------GCACACAC  8

seq1  ACACATATATATACGCTGTAGCTGTCTTCAGACACACCAGAAGAGGGCAT  400
      |||||          |||||||||| |||||| ||||||| |||||| ||
seq2  ACACA----------CTGTAGCTGTTTTCAGAAACACCAG-AGAGGGTAT  47

seq1  TGGATTCCATTACAGATGGTTGTGAGC--CACCATGCAGTTGCTGGGAAT  448
      |||||  ||||| |||| |||||||||  |||||||  ||||||||||||
seq2  TGGATCTCATTATAGATAGTTGTGAGCCACACCATGTGGTTGCTGGGAAT  97

seq1  TGAA  452
      ||||
seq2  TGAA  101

seq1: chr13_103742899_103744016
seq2: B6Ng01-047M20.g_68_1143

seq1  GAATTCTTTGAGAATTTCATCCAATATATTTTGATTACATCCGTGCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGAATTTCATCCAATATATTTTGATTACATCCGTGCCCCA  50

seq1  CTCTTTGCCCTGATTCCTCATCCAAGTTGTTTCACGCGAAAATCTCGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCCCTGATTCCTCATCCAAGTTGTTTCACGCGAAAATCTCGGGA  100

seq1  GAACTTTTCATATGGGAGTCAGGCAAGCTATAACCCAAGACCAGTGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTTCATATGGGAGTCAGGCAAGCTATAACCCAAGACCAGTGATGT  150

seq1  TCCCGAAGATGCATTGCATGGAAGGAGCAACCCAGGGAGCAAAATCTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAAGATGCATTGCATGGAAGGAGCAACCCAGGGAGCAAAATCTACC  200

seq1  AATGCCCAGGAGGGCACCAATTCGACAGGAGGTTCCCATGTGTGACATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCAGGAGGGCACCAATTCGACAGGAGGTTCCCATGTGTGACATGG  250

seq1  GTGGGCCCCGAGGACTCAAAGATAAAGCAGTCCTGACAGGCCCTGGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCCCCGAGGACTCAAAGATAAAGCAGTCCTGACAGGCCCTGGGGTG  300

seq1  CGCTTACCTCCAGAAGTGAAAGGTCAAGAGAGGACTACAGGGGCTGCCCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTACCTCCAGAAGTGAAAGGTCAAGAGAGGACTACAGGGGCTGCCCG  350

seq1  GGCTGGATGGGGTGGGACTCAGGCTCCTTGGAGTGAGACTGAAAGTTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGATGGGGTGGGACTCAGGCTCCTTGGAGTGAGACTGAAAGTTAAA  400

seq1  ATAACATCATTCCGAGTGGGAGAAATGATTGCAGTACAAATAGCACAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATCATTCCGAGTGGGAGAAATGATTGCAGTACAAATAGCACAGCT  450

seq1  CACTGGAGGGATGAGCTCCCCTCGGGCCCAATCACCAGGACCTGATTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAGGGATGAGCTCCCCTCGGGCCCAATCACCAGGACCTGATTACC  500

seq1  AACAGCATCAGGTCATCATCTAATCACTTGCCCCTTTCGGCTCTAGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCATCAGGTCATCATCTAATCACTTGCCCCTTTCGGCTCTAGAGTA  550

seq1  CAGAATAAGGAGGCAACTTCCTGCGGAAAATTGCATTTAAAAACCACGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAGGAGGCAACTTCCTGCGGAAAATTGCATTTAAAAACCACGGC  600

seq1  TGCCATTTTTCTTTGAGCCTTTTCTTTGTCACAAAGCAACTGGTCTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTTTCTTTGAGCCTTTTCTTTGTCACAAAGCAACTGGTCTGATA  650

seq1  TCGCCATAGCGATTTTTTTTTTTCTGTGCGTCAAAGACAATCTAATGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCATAGCGATTTTTTTTTTTCTGTGCGTCAAAGACAATCTAATGTTA  700

seq1  TTTTCTATGGAATATACATTGACTATAAGCTTTCTACATTGGGAATCACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATGGAATATACATTGACTATAAGCTTTCTACATTGGGAATCACG  750

seq1  GATGAGTCTAGAGCAGAAGTAGAGGGAAGTGGTCATCAGACAATGTAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTCTAGAGCAGAAGTAGAGGGAAGTGGTCATCAGACAATGTAGAT  800

seq1  AAACAGGTTAAAATCC-TGACGTTTTAGAACAGCAGACATTCACATGTTC  849
      |||||||||||||||| ||||||||||| |||||||||||||||||||||
seq2  AAACAGGTTAAAATCCTTGACGTTTTAG-ACAGCAGACATTCACATGTTC  849

seq1  ATGTAAGACAGATGTGTTCTTAAATACTGAGAGAAGCAGATCTTCCTTTT  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATGTAAGACAGATGTGTTCTTAAATACTGAGAGAAGCAGATCTTCC-TTT  898

seq1  AGCAATGACCCAGGATTATTTTGTTCTTGTTGTTGTTTGCTTGTTTTTTG  949
      ||||||||||   |||   |||||||       ||| || |  | |||||
seq2  AGCAATGACC--AGAT--ATTTGTTC-------TGTGTGTTGCTGTTTTG  937

seq1  TTTTGTTTCATTTTTCCCTAAGCCTTAAGGGCAATGGTAACAGGGTTCAT  999
      ||    ||||||||  ||||   ||||  ||| |||   ||| |||||||
seq2  TT---GTTCATTTT--CCTA--GCTTA--GGC-ATG--TACA-GGTTCAT  974

seq1  CATGCGTATATTTGTAATTAAAAAAAAAACTTCGAAAAATTATTAAGAGT  1049
      ||||||||||||||| ||||||||||||   ||| ||||||| |||||||
seq2  CATGCGTATATTTGT-ATTAAAAAAAAA--CTCG-AAAATTA-TAAGAGT  1019

seq1  G-TCTATAGACTAGTTTTTATTTCAGAGAAATTTTTCTTTCCTTTTCTTT  1098
      | ||| |||||||| ||||||    |||||    |||||  |||| ||||
seq2  GTTCTTTAGACTAG-TTTTAT---CGAGAA----TTCTT--CTTTCCTTT  1059

seq1  TTTTTCCCCCCAATTCAGCA  1118
      ||||| |||   | ||||||
seq2  TTTTTACCC---AATCAGCA  1076