BAC Information

Click to search

BAC

Clone NameB6Ng01-049G05
Chromosome13 (Build37)
Map Location 12,614,116 - 12,733,755
singlet/doubletdoublet
Overlap geneEro1lb, LOC664862
Upstream geneZp4, Ryr2, LOC100039678, Mtr, LOC100039826, Actn2, EG432725, Heatr1, LOC546246, Lgals8, LOC100039900, Edaradd
Downstream geneEG238507, LOC100039744, EG630757, Prl2c3, LOC100039999, LOC100039754, Prl2c2, LOC434483, LOC674723, Prl2c5, LOC630611, LOC100039786, LOC385049, LOC630663, LOC100040108, Gpr137b, LOC664960, Nid1, Lyst
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049G05.bB6Ng01-049G05.g
ACCDH873666DH873667
length332966
definitionDH873666|Mus musculus domesticus DNA, BAC clone: B6Ng01-049G05, 5' end.DH873667|Mus musculus domesticus DNA, BAC clone: B6Ng01-049G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,614,116 - 12,614,447)(12,732,797 - 12,733,755)
sequence
atttctgaggtttggttgttagaaaccacatatacagttgggctgtcttg
ttagcgcaagttctagcggtttgtttttcaaaaggaaattgtcagtacgt
ttcgttacttatatctttcactaggtagaagatgattcagatatctacag
tgtctttcttcttatgtgtgtgcacatggatgagtgtgtgccatggaagc
aaacgcagaggtcagaaggtcactctctcctgctgtaggtcatggggatc
acactcgggccatcaggctggaggctaggaccgtcccttccctgctgaac
ttagtctctccctctccctctccctctccctc
gaattctccagggaatctcataggagggggcacactctgcacctgatttc
ggggaccctggctgtcccgtcctgctctgtgaagggggaagctcaacacc
tatgctgcacaccctgaagcaatgggatgatgtctggttctgggaggcaa
tggagggaggaggaggatgacccactggggcttctgggtttatgtaataa
tttccccagtctatcaggaagtgggctgtgcatcagggccataaggagaa
cccatgtgcctctgagtccatcacctgattcagatgagagttccttttat
ggtcaagaaagcatccaggctagtcttttaacatttagaatcacggcttg
cagacatgtctgataatacacaatcctagtagccatattaggccagcaca
ggcttacatgcacggtacctatcaggaggcaggtgtctgactaacctctt
tacacatttgactcacctgggcctcagaaacataccgggcaggtgctgtt
atccatcttatgttatgcgtactcggtgaacaggaaggtcaggtacctat
cccagacgcacagctgatcattgttcaagcctggactcagcacaagactc
cccactcttggcctagatgttcctctgcttgagatggggatacacaggtg
gcctgtggagacacggtagtgtggaactgggtgaaacagtaaggattaga
gagccgtgtgtcctgagtgttgtcataggcggaaagtctgatggagaagc
ttgtgggaggtgtggatgcatacatgaagatgcagacctgagtggtgaca
gtcccatacatcatacatatatcagcggtctcaacctgtggatcatgacc
cctttggggttgaatgaccctttcatgagggttgctaaggccacctgaaa
tatatatgtttacattataacccataaagtagcaaataccgttatgaagt
agctacgaaaatgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_12614116_12614447
seq2: B6Ng01-049G05.b_51_382

seq1  ATTTCTGAGGTTTGGTTGTTAGAAACCACATATACAGTTGGGCTGTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGGTTTGGTTGTTAGAAACCACATATACAGTTGGGCTGTCTTG  50

seq1  TTAGCGCAAGTTCTAGCGGTTTGTTTTTCAAAAGGAAATTGTCAGTACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCGCAAGTTCTAGCGGTTTGTTTTTCAAAAGGAAATTGTCAGTACGT  100

seq1  TTCGTTACTTATATCTTTCACTAGGTAGAAGATGATTCAGATATCTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTACTTATATCTTTCACTAGGTAGAAGATGATTCAGATATCTACAG  150

seq1  TGTCTTTCTTCTTATGTGTGTGCACATGGATGAGTGTGTGCCATGGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCTTCTTATGTGTGTGCACATGGATGAGTGTGTGCCATGGAAGC  200

seq1  AAACGCAGAGGTCAGAAGGTCACTCTCTCCTGCTGTAGGTCATGGGGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCAGAGGTCAGAAGGTCACTCTCTCCTGCTGTAGGTCATGGGGATC  250

seq1  ACACTCGGGCCATCAGGCTGGAGGCTAGGACCGTCCCTTCCCTGCTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCGGGCCATCAGGCTGGAGGCTAGGACCGTCCCTTCCCTGCTGAAC  300

seq1  TTAGTCTCTCCCTCTCCCTCTCCCTCTCCCTC  332
      ||||||||||||||||||||||||||||||||
seq2  TTAGTCTCTCCCTCTCCCTCTCCCTCTCCCTC  332

seq1: chr13_12732797_12733755
seq2: B6Ng01-049G05.g_68_1020 (reverse)

seq1  GCTACTTCATAACGGTAATTTTGCTACTTTTATGGGTTATAATGTAAACA  50
      |||||||||||||||||  |||||||| ||||||||||||||||||||||
seq2  GCTACTTCATAACGGTA--TTTGCTAC-TTTATGGGTTATAATGTAAACA  47

seq1  TATATATTTTCCGGTGGCCTTAGGCAACCCTCATGAAAGGGTCATTCAAC  100
      |||||| |||| |||||||||| |||||||||||||||||||||||||||
seq2  TATATA-TTTCAGGTGGCCTTA-GCAACCCTCATGAAAGGGTCATTCAAC  95

seq1  CCCAAAGGGGTCATGATCCACAGGTTGAGAACCGCTGATATATGTATGAT  150
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCCAAAGGGGTCATGATCCACAGGTTGAG-ACCGCTGATATATGTATGAT  144

seq1  GTATGGGACTGTCA-CACTCAGGTCTGCATCTTCATGTATGCATCCACAC  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTATGGGACTGTCACCACTCAGGTCTGCATCTTCATGTATGCATCCACAC  194

seq1  CTCCCACAGCCTTCTCCATCAGGCCTGTCCGCCTATGACAACACTCAGGA  249
      ||||||||  ||||||||||| | || |||||||||||||||||||||||
seq2  CTCCCACAAGCTTCTCCATCA-GACTTTCCGCCTATGACAACACTCAGGA  243

seq1  CACACGGCTCTCTAATCCTTACTGTTTCACCCAGTTCCACACTACCGTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGGCTCTCTAATCCTTACTGTTTCACCCAGTTCCACACTACCGTGT  293

seq1  CTCCACAGGCCACCTGTGTATCCCCATCTCAAGCAGAGGAACATCTAGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGGCCACCTGTGTATCCCCATCTCAAGCAGAGGAACATCTAGGC  343

seq1  CAAGAGTGGGGAGTCTTGTGCTGAGTCCAGGCTTGAACAATGATCAGCTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGTGGGGAGTCTTGTGCTGAGTCCAGGCTTGAACAATGATCAGCTG  393

seq1  TGCGTCTGGGATAGGTACCTGACCTTCCTGTTCACCGAGTACGCATAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCTGGGATAGGTACCTGACCTTCCTGTTCACCGAGTACGCATAACA  443

seq1  TAAGATGGATAACAGCACCTGCCCGGTATGTTTCTGAGGCCCAGGTGAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATGGATAACAGCACCTGCCCGGTATGTTTCTGAGGCCCAGGTGAGT  493

seq1  CAAATGTGTAAAGAGGTTAGTCAGACACCTGCCTCCTGATAGGTACCGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGTAAAGAGGTTAGTCAGACACCTGCCTCCTGATAGGTACCGTG  543

seq1  CATGTAAGCCTGTGCTGGCCTAATATGGCTACTAGGATTGTGTATTATCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAGCCTGTGCTGGCCTAATATGGCTACTAGGATTGTGTATTATCA  593

seq1  GACATGTCTGCAAGCCGTGATTCTAAATGTTAAAAGACTAGCCTGGATGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGTCTGCAAGCCGTGATTCTAAATGTTAAAAGACTAGCCTGGATGC  643

seq1  TTTCTTGACCATAAAAGGAACTCTCATCTGAATCAGGTGATGGACTCAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGACCATAAAAGGAACTCTCATCTGAATCAGGTGATGGACTCAGA  693

seq1  GGCACATGGGTTCTCCTTATGGCCCTGATGCACAGCCCACTTCCTGATAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATGGGTTCTCCTTATGGCCCTGATGCACAGCCCACTTCCTGATAG  743

seq1  ACTGGGGAAATTATTACATAAACCCAGAAGCCCCAGTGGGTCATCCTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAAATTATTACATAAACCCAGAAGCCCCAGTGGGTCATCCTCCT  793

seq1  CCTCCCTCCATTGCCTCCCAGAACCAGACATCATCCCATTGCTTCAGGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCATTGCCTCCCAGAACCAGACATCATCCCATTGCTTCAGGGT  843

seq1  GTGCAGCATAGGTGTTGAGCTTCCCCCTTCACAGAGCAGGACGGGACAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGCATAGGTGTTGAGCTTCCCCCTTCACAGAGCAGGACGGGACAGC  893

seq1  CAGGGTCCCCGAAATCAGGTGCAGAGTGTGCCCCCTCCTATGAGATTCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCCCCGAAATCAGGTGCAGAGTGTGCCCCCTCCTATGAGATTCCC  943

seq1  TGGAGAATTC  959
      ||||||||||
seq2  TGGAGAATTC  953