BAC Information

Click to search

BAC

Clone NameB6Ng01-049N19
Chromosome13 (Build37)
Map Location 14,585,623 - 14,734,970
singlet/doubletdoublet
Overlap geneHecw1, Mrpl32, Psma2, AW209491
Upstream geneNid1, Lyst, LOC100039831, Gng4, EG665000, EG665008, LOC630894, LOC100040205, B3galnt2, Tbce, Ggps1, LOC100040243, Arid4b, LOC100039916
Downstream geneEG665099, LOC670994, EG625121, Gli3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049N19.bB6Ng01-049N19.g
ACCDH873997DH873998
length1,0561,088
definitionDH873997|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N19, 5' end.DH873998|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,733,896 - 14,734,970)(14,585,623 - 14,586,733)
sequence
gaattcttttgactttttcctatgtgtactacattattctctttcctcat
acctcatttggaattagtttcttcttcatttactgtaggggttacactta
tatgtttacaccccaccccctgagacagggtttctctgtgtagccctggc
tgtcctggaactcactctgtagaccagactggcctcaaactcagaaatcc
acctgcctctgcctcccaagtaattcaatgcctctgggattaaagacatg
agccaccactgcccacactttgtttgtttgtttgtttgtttgtttgtttg
tttaattgtgtatgtgtgtgtgtgcgtaaaaacatgtcactgtgcaagtg
tagtggtcataggaatgagttatcacctcctacctcgttgagtcaatggg
tctcctattgcctgttactgagctgttctccaagcttagtagcctgtgag
cttctgtgattttcccgtctccctctcatctttctgtagaaaggctgtaa
ttagaggcatgtacagcagcctctggcttatgtaggttcttagatcaaac
tgtatcaggcatgcacagctaacacttttacctgctgaccccccaattcc
cactcgtcagcctcaagttacatttcttaatacttaaaactaagttgctt
tagttttccaaaatatttttaggttatcttttcagagaatgtgcttttct
aaacatacttttacttttgcctactgaagaccaaggtagaaaagatcaat
tattagacagtgattgattgatttagtgatttacttaaagcactgcctat
ttgctaagcatgactttgttacctacatcagaatgacctagagaacagct
gaaacaacgtgtcactgttcttcacaacccgctgactgcactgtgccttt
tgctttagaacagcaattctcacttgtgggtcatgactctttgaggttga
acaacccaaagcatcaatgctagcgcagcaggcactggcttgttcttttg
agactctctgacccgaccggaactccgaaatctccagccagcttgctagt
ccactg
gaattctttaggagtcacttgatatcttctctgtacatcctgctttgagt
tgaaggtcataaagcactggccaacttttttttgtcactataatctaatt
cttaaaacgttgactctttaataatactagggagagagaatcaactgtta
ttaagctgcattataaatagtataatcaaaagcttaaataatgattcaag
tcttggcttcacaaacaaatgactatgtgaagttaagcatgctattatat
atatatataaatatttttacatctataatgtagtaacaataatagggtta
ttgagtaaaattgtgaaatagggtacttaaaatattcaccatagtgcctg
atttgcaataaatgcaataagtgttagttatcattttattaactaaaaca
tttagattcagcaatgccacatgaaaagctaagaacatgacaattgttta
caattgtctattgaactttaaatttaggtaaaataagggcttcctaataa
aatattcaaatgtaaaactgttatttgcaaatcacatgacacataattta
aacaactcatctgtatgggcacgtttgtactaaaaaaaaaaacaacaaca
acaactttggaacaagtaaaaagaagaggctctgaacaacattcccacgg
agatttttactttaaaaaattactttaacataacttagacttacagaaaa
gttgcaaaggccatgtatcttccaccaaatctacctttatgttaacatct
gattactatggtatcctggccaaaaataataactgtacaatgctgtattc
taaagactcttgtcacattttgttgatgcacatttttgttccaggatttt
tcacgtgtttgtttatgcctcttgttttctttgactctggaaattctcag
tctttcttgacttcccaaatggatgaaatatttgtaatgttcctcagtct
gggttgtctaagtatatatctatatattataggattatttcagtattatt
tttagaaaggggtttctagtaatgctggctattctggaactctcttagtt
gaacacctagctgatctcacgagagcttgaccttctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_14733896_14734970
seq2: B6Ng01-049N19.b_48_1103 (reverse)

seq1  CAGTGGGAACTTAGCAAGCTGGGCTGGGAGATTTCGGAGTTCCGGGTCCG  50
      ||||||  || ||||||||| |||| |||||||||||||||||||   ||
seq2  CAGTGG--AC-TAGCAAGCT-GGCT-GGAGATTTCGGAGTTCCGG--TCG  43

seq1  GGTCAGAGAGTCTCCAAAAGAACAGGCCAGTGCCTTGCCTGCGCTAGCAT  100
      ||||||||||||| |||||||||| ||||||||||   ||||||||||||
seq2  GGTCAGAGAGTCT-CAAAAGAACAAGCCAGTGCCT--GCTGCGCTAGCAT  90

seq1  GGATTGCTTTTGGGTTTGTTCAACCCTCAAAGGAGTCATGACCCACAAGT  150
       || ||||||  || |||||||| ||||||| ||||||||||||||||| 
seq2  TGA-TGCTTT--GGGTTGTTCAA-CCTCAAA-GAGTCATGACCCACAAG-  134

seq1  TGAGAATTGCTGTTCTAAAAGCAAAAGGCACAGTGGCAGTCAGCGGGTTG  200
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  TGAGAATTGCTGTTCT-AAAGCAAAAGGCACAGT-GCAGTCAGCGGGTTG  182

seq1  TGAAGAACAGTGACACGTTGTTTCAGCTGTTTCTCTAGGTCATTCTGATG  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAAGAACAGTGACACGTTGTTTCAGCTG-TTCTCTAGGTCATTCTGATG  231

seq1  TAGGTAACAAAGTCATGCTTAGCAAATAGGCAGTGCTTTAAGTAAATCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAACAAAGTCATGCTTAGCAAATAGGCAGTGCTTTAAGTAAATCAC  281

seq1  TAAATCAATCAATCACTGTCTAATAATTGATCTTTTCTACCTTGGTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAATCAATCACTGTCTAATAATTGATCTTTTCTACCTTGGTCTTC  331

seq1  AGTAGGCAAAAGTAAAAGTATGTTTAGAAAAGCACATTCTCTGAAAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCAAAAGTAAAAGTATGTTTAGAAAAGCACATTCTCTGAAAAGAT  381

seq1  AACCTAAAAATATTTTGGAAAACTAAAGCAACTTAGTTTTAAGTATTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAAAATATTTTGGAAAACTAAAGCAACTTAGTTTTAAGTATTAAG  431

seq1  AAATGTAACTTGAGGCTGACGAGTGGGAATTGGGGGGTCAGCAGGTAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAACTTGAGGCTGACGAGTGGGAATTGGGGGGTCAGCAGGTAAAA  481

seq1  GTGTTAGCTGTGCATGCCTGATACAGTTTGATCTAAGAACCTACATAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGCTGTGCATGCCTGATACAGTTTGATCTAAGAACCTACATAAGC  531

seq1  CAGAGGCTGCTGTACATGCCTCTAATTACAGCCTTTCTACAGAAAGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTGCTGTACATGCCTCTAATTACAGCCTTTCTACAGAAAGATGA  581

seq1  GAGGGAGACGGGAAAATCACAGAAGCTCACAGGCTACTAAGCTTGGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAGACGGGAAAATCACAGAAGCTCACAGGCTACTAAGCTTGGAGAA  631

seq1  CAGCTCAGTAACAGGCAATAGGAGACCCATTGACTCAACGAGGTAGGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCAGTAACAGGCAATAGGAGACCCATTGACTCAACGAGGTAGGAGG  681

seq1  TGATAACTCATTCCTATGACCACTACACTTGCACAGTGACATGTTTTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTCATTCCTATGACCACTACACTTGCACAGTGACATGTTTTTAC  731

seq1  GCACACACACACATACACAATTAAACAAACAAACAAACAAACAAACAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACACATACACAATTAAACAAACAAACAAACAAACAAACAAAC  781

seq1  AAACAAAGTGTGGGCAGTGGTGGCTCATGTCTTTAATCCCAGAGGCATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGTGTGGGCAGTGGTGGCTCATGTCTTTAATCCCAGAGGCATTG  831

seq1  AATTACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGTCT  881

seq1  GGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTG  931

seq1  TCTCAGGGGGTGGGGTGTAAACATATAAGTGTAACCCCTACAGTAAATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGGGGTGGGGTGTAAACATATAAGTGTAACCCCTACAGTAAATGA  981

seq1  AGAAGAAACTAATTCCAAATGAGGTATGAGGAAAGAGAATAATGTAGTAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAACTAATTCCAAATGAGGTATGAGGAAAGAGAATAATGTAGTAC  1031

seq1  ACATAGGAAAAAGTCAAAAGAATTC  1075
      |||||||||||||||||||||||||
seq2  ACATAGGAAAAAGTCAAAAGAATTC  1056

seq1: chr13_14585623_14586733
seq2: B6Ng01-049N19.g_68_1155

seq1  GAATTCTTTAGGAGTCACTTGATATCTTCTCTGTACATCCTGCTTTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGGAGTCACTTGATATCTTCTCTGTACATCCTGCTTTGAGT  50

seq1  TGAAGGTCATAAAGCACTGGCCAACTTTTTTTTGTCACTATAATCTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTCATAAAGCACTGGCCAACTTTTTTTTGTCACTATAATCTAATT  100

seq1  CTTAAAACGTTGACTCTTTAATAATACTAGGGAGAGAGAATCAACTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACGTTGACTCTTTAATAATACTAGGGAGAGAGAATCAACTGTTA  150

seq1  TTAAGCTGCATTATAAATAGTATAATCAAAAGCTTAAATAATGATTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGCATTATAAATAGTATAATCAAAAGCTTAAATAATGATTCAAG  200

seq1  TCTTGGCTTCACAAACAAATGACTATGTGAAGTTAAGCATGCTATTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTTCACAAACAAATGACTATGTGAAGTTAAGCATGCTATTATAT  250

seq1  ATATATATAAATATTTTTACATCTATAATGTAGTAACAATAATAGGGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATAAATATTTTTACATCTATAATGTAGTAACAATAATAGGGTTA  300

seq1  TTGAGTAAAATTGTGAAATAGGGTACTTAAAATATTCACCATAGTGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAAAATTGTGAAATAGGGTACTTAAAATATTCACCATAGTGCCTG  350

seq1  ATTTGCAATAAATGCAATAAGTGTTAGTTATCATTTTATTAACTAAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCAATAAATGCAATAAGTGTTAGTTATCATTTTATTAACTAAAACA  400

seq1  TTTAGATTCAGCAATGCCACATGAAAAGCTAAGAACATGACAATTGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGATTCAGCAATGCCACATGAAAAGCTAAGAACATGACAATTGTTTA  450

seq1  CAATTGTCTATTGAACTTTAAATTTAGGTAAAATAAGGGCTTCCTAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTCTATTGAACTTTAAATTTAGGTAAAATAAGGGCTTCCTAATAA  500

seq1  AATATTCAAATGTAAAACTGTTATTTGCAAATCACATGACACATAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCAAATGTAAAACTGTTATTTGCAAATCACATGACACATAATTTA  550

seq1  AACAACTCATCTGTATGGGCACGTTTGTACTAAAAAAAAAAACAACAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTCATCTGTATGGGCACGTTTGTACTAAAAAAAAAAACAACAACA  600

seq1  ACAACTTTGGAACAAGTAAAAAGAAGAGGCTCTGAACAACATTCCCACGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTTGGAACAAGTAAAAAGAAGAGGCTCTGAACAACATTCCCACGG  650

seq1  AGATTTTTACTTTAAAAAATTACTTTAACATAACTTAGACTTACAGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTACTTTAAAAAATTACTTTAACATAACTTAGACTTACAGAAAA  700

seq1  GTTGCAAAGGCCATGTATCTTCCACCAAATCTACCTTTATGTTAACATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAAGGCCATGTATCTTCCACCAAATCTACCTTTATGTTAACATCT  750

seq1  GATTACTATGGTATCCTGGCCAAAAATAATAACTGTACAATGCTGTATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTATGGTATCCTGGCCAAAAATAATAACTGTACAATGCTGTATTC  800

seq1  TAAAGACTCTTGTCACATTTTGTTGATGCACATTTTTGTTCCAGGATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTCTTGTCACATTTTGTTGATGCACATTTTTGTTCCAGGATTTT  850

seq1  TCACGGTGTTTGTTTATGCCTCCTTGTTTTCCTTTGAACTCTGGAAATTC  900
      |||| |||||||||||||||| |||||||| ||||| |||||||||||| 
seq2  TCAC-GTGTTTGTTTATGCCT-CTTGTTTT-CTTTG-ACTCTGGAAATT-  895

seq1  CTCAGTCTTTCCTTGACTTCCCAAATTGGAATGAAATTATTTTGTAAATT  950
      |||||||||| |||||||||||||||  | |||||||   |||||||  |
seq2  CTCAGTCTTT-CTTGACTTCCCAAAT--GGATGAAAT--ATTTGTAA--T  938

seq1  GTTCCTCAGTCTGGGTTTGTCTTATAGTATTATATCTATTATTATTATAG  1000
      ||||||||||||||| ||||||   |||| |||||||||   ||||||||
seq2  GTTCCTCAGTCTGGG-TTGTCT--AAGTA-TATATCTAT--ATATTATAG  982

seq1  GATTATATCAGTTATTATTTTTTAGACAGGGGTTTTCTATGTAATGCTGG  1050
      |||||| |||| ||||| |||||||| ||||| |||||| ||||||||||
seq2  GATTATTTCAG-TATTA-TTTTTAGAAAGGGG-TTTCTA-GTAATGCTGG  1028

seq1  CTATTCTGGAACTCTCTATGTAGACCACACTAGCTTTGATCTCAC-AGAG  1099
      |||||||||||||||||  || || ||| |||||  ||||||||| ||||
seq2  CTATTCTGGAACTCTCTTAGTTGAACAC-CTAGC--TGATCTCACGAGAG  1075

seq1  CTTGA-CATCTCT  1111
      ||||| | |||||
seq2  CTTGACCTTCTCT  1088