BAC Information

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BAC

Clone NameB6Ng01-050A03
Chromosome13 (Build37)
Map Location 51,572,267 - 51,665,598
singlet/doubletdoublet
Overlap geneShc3
Upstream geneEG639044, Gm904, LOC100040315, EG667693, LOC100040161, LOC100040190, EG667712, LOC676997, EG667717, Spin1, 4930519N16Rik, EG667728, LOC667733, Ppia-ps13_636.1, LOC625524, Edg3
Downstream geneCks2, Secisbp2, Sema4d, Gadd45g, LOC100040321, Diras2, LOC100040572
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050A03.bB6Ng01-050A03.g
ACCDH874088DH874089
length9871,018
definitionDH874088|Mus musculus domesticus DNA, BAC clone: B6Ng01-050A03, 5' end.DH874089|Mus musculus domesticus DNA, BAC clone: B6Ng01-050A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,572,267 - 51,573,261)(51,664,562 - 51,665,598)
sequence
gaattcagtagacaccgagtgaattaagagctgccctaaattctaaaagc
tacgtaagtcctctgtgctatttttatctttttaaagacaatgtaacgac
attgaagaagagttcctgtgtggaaaagagctcccagctccatcccgaca
cagccaggcttatctctgagcagtgtcctctgtccttgtccccagtcaga
aggcaccagatagaatacgtattcctgtaaaactcgaaaataacatatca
ttatagggtccaatttttaaatattttaaaatgctgactctgcatgttga
catttgtaaaacctcatctagagaaacctgagatttcaggagaataggga
gcagcgaggccaccgggaggctacggagctaatgatggttgctctagagt
ccggctaccggtgggcaagcagctccagaaggaatgataagtcaacagaa
tccccagccgtaagccaggattttgttctcttgggggtggcagttgagac
agggcttcctgtagcccatgctagactagaattcatgttgataaggctgg
ccttgaacttgtgattctcctgacttggagtccttatcacttggattaca
tgtgtgccctgccatgcccggagttaagtgtctaatgctgcataattgat
tttttgtgtgtttaacttttatttatttaatttttctcataaaacacctc
caaggtctgaggagatggctcagctgataaattgcttgccacacttgcat
gtgaggacctgagtttgatcccccggaagatgtgaaaaactaggactgta
gcctgtaatcccagcactggggaggtaaagaaaggagggtttcatgggcc
cactggccaggcagtcttggcaatgtgtgaactccagaacatgagagact
ctgtttcaaaatcaaagtggagatgtctgacatcttcagctgagtatcat
cctgtttacacatacccacatgctcccacactcacac
gaattccatctgacgcatttgggctctttaatttattttcttttttcctg
tacaccaaaatattcgtatcactttccagctaacagcagctctagctgta
ctatatgatattcttggtatattaacgtctaacaccaacgagtctaattg
ttgtatgtaaatttacaccgccattcatattttctcagtcggctccctcc
gttggcctcataatagaatccaaagtctccttgttggctaaagggttaaa
tgatgtagctttgggatcccctccgctgctctggagacttagcttgcata
ggtcttctttattcctttattaggaaagacttcatggggaagaggctagc
ctttgactgggtcttctgtgtgcattcataataaaagctggtacattcat
ggctgctctgtgaggtagaagaaccagtgaatgaaagtttgggtacagct
cacctcccagagagtggtcctgcttcacccggaactgacccgatagtctc
caacacccttataaaactaattttccccatctctctataccggcttgttt
cttcctcccagaatttttgtaatcaatctgggtggtgttatttttttttt
tttctttctctttttttttcccacactgctgttggataaaagatcccgcc
cttgattgaaatggaatcttccactattgagcgagcctttgttgaatgag
tcatcggctcagcctctcattggctgaagccgcctgagcccaggggattg
cctggcaccggctgcaaggacccgctccattcacagaaacgctggctcgc
tcgccggccctttcattcacacaaacagcatctcattcacattcggtctg
ttttttttttttttccttttcttttttcttttgtctgctcaatgaagaag
accacggtttgggatggtggggctgacttgctcgattgaggggattccat
caccatcgaaatcgtctggggtggcatctgctttgctatgcagctaaagg
atggagaaagagatgcgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_51572267_51573261
seq2: B6Ng01-050A03.b_31_1017

seq1  GAATTCAGTAGACACCGAGTGAATTAAGAGCTGCCCTAAATTCTAAAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGACACCGAGTGAATTAAGAGCTGCCCTAAATTCTAAAAGC  50

seq1  TACGTAAGTCCTCTGTGCTATTTTTATCTTTTTAAAGACAATGTAACGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTAAGTCCTCTGTGCTATTTTTATCTTTTTAAAGACAATGTAACGAC  100

seq1  ATTGAAGAAGAGTTCCTGTGTGGAAAAGAGCTCCCAGCTCCATCCCGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGAAGAGTTCCTGTGTGGAAAAGAGCTCCCAGCTCCATCCCGACA  150

seq1  CAGCCAGGCTTATCTCTGAGCAGTGTCCTCTGTCCTTGTCCCCAGTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGCTTATCTCTGAGCAGTGTCCTCTGTCCTTGTCCCCAGTCAGA  200

seq1  AGGCACCAGATAGAATACGTATTCCTGTAAAACTCGAAAATAACATATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCAGATAGAATACGTATTCCTGTAAAACTCGAAAATAACATATCA  250

seq1  TTATAGGGTCCAATTTTTAAATATTTTAAAATGCTGACTCTGCATGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGGGTCCAATTTTTAAATATTTTAAAATGCTGACTCTGCATGTTGA  300

seq1  CATTTGTAAAACCTCATCTAGAGAAACCTGAGATTTCAGGAGAATAGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAAAACCTCATCTAGAGAAACCTGAGATTTCAGGAGAATAGGGA  350

seq1  GCAGCGAGGCCACCGGGAGGCTACGGAGCTAATGATGGTTGCTCTAGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCGAGGCCACCGGGAGGCTACGGAGCTAATGATGGTTGCTCTAGAGT  400

seq1  CCGGCTACCGGTGGGCAAGCAGCTCCAGAAGGAATGATAAGTCAACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTACCGGTGGGCAAGCAGCTCCAGAAGGAATGATAAGTCAACAGAA  450

seq1  TCCCCAGCCGTAAGCCAGGATTTTGTTCTCTTGGGGGTGGCAGTTGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCCGTAAGCCAGGATTTTGTTCTCTTGGGGGTGGCAGTTGAGAC  500

seq1  AGGGCTTCCTGTAGCCCATGCTAGACTAGAATTCATGTTGATAAGGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTTCCTGTAGCCCATGCTAGACTAGAATTCATGTTGATAAGGCTGG  550

seq1  CCTTGAACTTGTGATTCTCCTGACTTGGAGTCCTTATCACTTGGATTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAACTTGTGATTCTCCTGACTTGGAGTCCTTATCACTTGGATTACA  600

seq1  TGTGTGCCCTGCCATGCCCGGAGTTAAGTGTCTAATGCTGCATAATTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCCTGCCATGCCCGGAGTTAAGTGTCTAATGCTGCATAATTGAT  650

seq1  TTTTTGTGTGTTTAACTTTTATTTATTTAATTTTTCTCATAAAACACCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGTGTTTAACTTTTATTTATTTAATTTTTCTCATAAAACACCTC  700

seq1  CAAGGTCTGAGGAGATGGCTCAGCTGATAAATTGCTTGCCACACTTGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCTGAGGAGATGGCTCAGCTGATAAATTGCTTGCCACACTTGCAT  750

seq1  GTGAGGACCTGAGTTTGATCCCCCGGAAGATGTGAAAAACTAGGACTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGACCTGAGTTTGATCCCCCGGAAGATGTGAAAAACTAGGACTGTA  800

seq1  GCCTGTAATCCCAGCACTGGGGAGGTAAAGAAAGGAGGGTTTCAGGGGCC  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCCTGTAATCCCAGCACTGGGGAGGTAAAGAAAGGAGGGTTTCATGGGCC  850

seq1  CACTGGCCAGGCAGTCTTGGCAAATGTGTGAACTCCAGAACAATGAGAGA  900
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  CACTGGCCAGGCAGTCTTGGC-AATGTGTGAACTCCAGAAC-ATGAGAGA  898

seq1  CTCTGTTTCAAAAATCAAAGTGGAAGATGTCTGACAATCTTCAGCTGAGG  950
      ||||||||| ||||||||||||| ||||||||||| ||||||||||||| 
seq2  CTCTGTTTC-AAAATCAAAGTGG-AGATGTCTGAC-ATCTTCAGCTGAG-  944

seq1  TTATCATCCTGTTTACACATACACACATGCTCACACAACTCACAC  995
       ||||||||||||||||||||| ||||||||| ||| ||||||||
seq2  -TATCATCCTGTTTACACATACCCACATGCTCCCAC-ACTCACAC  987

seq1: chr13_51664562_51665598
seq2: B6Ng01-050A03.g_67_1084 (reverse)

seq1  CCGCACTCTCTTTTCTCCCTTCCTCTAGCTCGCATAGCAACAGCAGATGC  50
      ||||| |||| ||||| || |||| ||||| ||||||||| |||||||||
seq2  CCGCA-TCTC-TTTCT-CCATCCTTTAGCT-GCATAGCAA-AGCAGATGC  45

seq1  GCACCCCACGGACGATTTCGATGGTGATTGGAGTCCCCCTCCAATCTGAA  100
       |||||||  ||||||||||||||||| |||| |||||   |||||   |
seq2  -CACCCCA--GACGATTTCGATGGTGA-TGGAATCCCC--TCAATC--GA  87

seq1  GCAAGTCAGCCCCACCATTCCCAAACCGTGGTCTTCTTCATTAGAAGCAG  150
      ||||||||||||||||| ||||||||||||||||||||||||   |||||
seq2  GCAAGTCAGCCCCACCA-TCCCAAACCGTGGTCTTCTTCATT--GAGCAG  134

seq1  ACAAAAAGAAAAAAAGAAAAAGGAAAAAAAAAAAAAACAGACCGAATGTG  200
      || |||||||||||   |||||||||||||||||||||||||||||||||
seq2  AC-AAAAGAAAAAA--GAAAAGGAAAAAAAAAAAAAACAGACCGAATGTG  181

seq1  AATGAGATGCTGTTTGTGTGAATGAAAGGGCCGGCGAGCGAGCCAGCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATGCTGTTTGTGTGAATGAAAGGGCCGGCGAGCGAGCCAGCGTT  231

seq1  TCTGTGAATGGAGCGGGTCCTTGCAGCCGGTGCCAGGCAATCCCCTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAATGGAGCGGGTCCTTGCAGCCGGTGCCAGGCAATCCCCTGGGC  281

seq1  TCAGGCGGCTTCAGCCAATGAGAGGCTGAGCCGATGACTCATTCAACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCGGCTTCAGCCAATGAGAGGCTGAGCCGATGACTCATTCAACAAA  331

seq1  GGCTCGCTCAATAGTGGAAGATTCCATTTCAATCAAGGGCGGGATCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGCTCAATAGTGGAAGATTCCATTTCAATCAAGGGCGGGATCTTTT  381

seq1  ATCCAACAGCAGTGTGGGAAAAAAAAAGAGAAAGAAAAAAAAAAAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACAGCAGTGTGGGAAAAAAAAAGAGAAAGAAAAAAAAAAAAATAA  431

seq1  CACCACCCAGATTGATTACAAAAATTCTGGGAGGAAGAAACAAGCCGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCAGATTGATTACAAAAATTCTGGGAGGAAGAAACAAGCCGGTA  481

seq1  TAGAGAGATGGGGAAAATTAGTTTTATAAGGGTGTTGGAGACTATCGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGATGGGGAAAATTAGTTTTATAAGGGTGTTGGAGACTATCGGGT  531

seq1  CAGTTCCGGGTGAAGCAGGACCACTCTCTGGGAGGTGAGCTGTACCCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCGGGTGAAGCAGGACCACTCTCTGGGAGGTGAGCTGTACCCAAA  581

seq1  CTTTCATTCACTGGTTCTTCTACCTCACAGAGCAGCCATGAATGTACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTCACTGGTTCTTCTACCTCACAGAGCAGCCATGAATGTACCAG  631

seq1  CTTTTATTATGAATGCACACAGAAGACCCAGTCAAAGGCTAGCCTCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTATGAATGCACACAGAAGACCCAGTCAAAGGCTAGCCTCTTCC  681

seq1  CCATGAAGTCTTTCCTAATAAAGGAATAAAGAAGACCTATGCAAGCTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGTCTTTCCTAATAAAGGAATAAAGAAGACCTATGCAAGCTAAG  731

seq1  TCTCCAGAGCAGCGGAGGGGATCCCAAAGCTACATCATTTAACCCTTTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAGCAGCGGAGGGGATCCCAAAGCTACATCATTTAACCCTTTAG  781

seq1  CCAACAAGGAGACTTTGGATTCTATTATGAGGCCAACGGAGGGAGCCGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAAGGAGACTTTGGATTCTATTATGAGGCCAACGGAGGGAGCCGAC  831

seq1  TGAGAAAATATGAATGGCGGTGTAAATTTACATACAACAATTAGACTCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATATGAATGGCGGTGTAAATTTACATACAACAATTAGACTCGT  881

seq1  TGGTGTTAGACGTTAATATACCAAGAATATCATATAGTACAGCTAGAGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTAGACGTTAATATACCAAGAATATCATATAGTACAGCTAGAGCT  931

seq1  GCTGTTAGCTGGAAAGTGATACGAATATTTTGGTGTACAGGAAAAAAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAGCTGGAAAGTGATACGAATATTTTGGTGTACAGGAAAAAAGAA  981

seq1  AATAAATTAAAGAGCCCAAATGCGTCAGATGGAATTC  1037
      |||||||||||||||||||||||||||||||||||||
seq2  AATAAATTAAAGAGCCCAAATGCGTCAGATGGAATTC  1018