BAC Information

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BAC

Clone NameB6Ng01-051J03
Chromosome13 (Build37)
Map Location 63,081,444 - 63,223,663
singlet/doubletdoublet
Overlap gene2010111I01Rik
Upstream geneEG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524
Downstream geneFancc, Ptch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051J03.bB6Ng01-051J03.g
ACCDH875171DH875172
length1,150593
definitionDH875171|Mus musculus domesticus DNA, BAC clone: B6Ng01-051J03, 5' end.DH875172|Mus musculus domesticus DNA, BAC clone: B6Ng01-051J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,222,512 - 63,223,663)(63,081,444 - 63,082,036)
sequence
gaattcttggccaagcatccatctttagacttctttccccacacaggtga
aagtcataaattcttacttggcaggaattgtctaaataacacagttgccc
tgttagaaaataagaaaggaaatactgattaaaatgtcaatttagcaaaa
tgagtctaccttctgaatcttggaataatttctggctcagaaattttctg
aatgcctttctggaccatttgaaaatatccagagatttccacctccagct
ttcggtcacaacatgtgtcattgtgaatgtgaagagtgtctccatggctc
tggtcttcatcacaggagatccagtaggctgggaccaggctgcatttctg
ctgctgactgttcatgtctcaagacacagtgacagaactgctggcactta
tgtaagcctgtcacagcatgagaaagcgcttccacgttctgtgtccagta
tcatcaaaataaaacaacacaactttcctgtggcatttaaaaaagtaatg
tttctttggttgctgcttgttactatttttcctgcctccttctccgttgg
atattccttcaaagtattaaggcatcaattttcttgaaagacagtgaccc
tgtacactgagcaatgtttctgagaatgttcaagttgatgtcaattacac
gcttcagtgatatataacacttctaaatattgtacagtctcatttaatca
tccacaacaagaacctttcttttttgaaatgaaggtcttactatgtagcc
ctagatgtcctggagctctctgtgtagacagggctgggctagaactctag
aactcaagacatcctcctgcttcttcctctgtctcccaggtgttggaatt
aaagatatatgtcgccatgtatggcattttctttatttctattcagagtt
caaggaaatccatttttctccttgattttaaataaatacagttatctccc
atatgctttggatctcatttctcctgtttgtgaagagaagccatatcccg
cattcatgtgtagacagaagggatgactggagtcacacttgtagtctgca
ttcctccactggaagcaaagcttcttcacttaacatgcatcatgactgta
cttgacaggattaatgcctcatgatatcaaccgttctatctaaattcgtc

gaattcatgaacatggctgttctgtcacatctagaagacacttgcttagg
ctcagtactctctgacttttagggtctttctgtctgtccttgagctgtag
tccctagggttaagaattttgcagttctgcagtgttttctgattagtctt
tacaaagcatacttttgtagttacaaggttgtaaggcaaagcttccttca
gaaaaatgcaatccaagaaattccagggagctgtgacttggcacgcaggc
tgtaagccacatgccagcaggctgcatgaggctggaactctgaagccatg
gtgagggcgaaatggaagttttcctactaagaattgtagaataaattgta
tccagcttctggaaacagtaagggacaagaaagagccacaagtcatttat
ttccctctttcctcagttctccttgaaacaggctggtagatctggcctta
tgtctggcactacagaggtgtcaggcattagtcacagctgcttcacatgg
gatcaggtacaggccctgcctgtcctgtgtcacctgctggctagtgatct
ttgcagaagtagctgaccctgtgtgtgggtttgggggtgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63222512_63223663
seq2: B6Ng01-051J03.b_43_1192 (reverse)

seq1  GACGAATTTTAGGTAGAAC-GTTG-TATCATGA-GCA-TGATCCTGTCAA  46
      |||||| ||||| |||||| |||| |||||||| ||| | ||||||||||
seq2  GACGAA-TTTAGATAGAACGGTTGATATCATGAGGCATTAATCCTGTCAA  49

seq1  GTTACAGTCATGATGCATGGTTAAGTG-AGAAGCTTTGCTCTCAGTGGAG  95
      | |||||||||||||||| |||||||| ||||||||||||  ||||||||
seq2  G-TACAGTCATGATGCAT-GTTAAGTGAAGAAGCTTTGCTTCCAGTGGAG  97

seq1  GAATGCAGACTACAGTTGTGACT-CAGTCCATCCCTTCCTGTCTACACCA  144
      ||||||||||||||  ||||||| |||| |||||||| ||||||||| ||
seq2  GAATGCAGACTACAAGTGTGACTCCAGT-CATCCCTT-CTGTCTACA-CA  144

seq1  TGAATGCGGGATATGGCTTCTCTTCACAAACAGGAGAAATGAGATCCAAA  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCGGGATATGGCTTCTCTTCACAAACAGGAGAAATGAGATCCAAA  194

seq1  GCATATGGGAGATAACTGTATTTTATTTTAAAATCAAGGAGAAAAATGGA  244
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  GCATATGGGAGATAACTGTATTT--ATTTAAAATCAAGGAGAAAAATGGA  242

seq1  TTTCCTTGAACTCTGAATAGAAATAAAGAAAATGCCATACATGGCGACAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTGAACTCTGAATAGAAATAAAGAAAATGCCATACATGGCGACAT  292

seq1  ATATCTTTAATTCCAACACCTGGGAGACAGAGGAAGAAGCAGGAGGATGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTAATTCCAACACCTGGGAGACAGAGGAAGAAGCAGGAGGATGT  342

seq1  CTTGAGTTCTAGAGTTCTAGCCCAGCCCTGTCTACACAGAGAGCTCCAGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTCTAGAGTTCTAGCCCAGCCCTGTCTACACAGAGAGCTCCAGG  392

seq1  ACATCTAGGGCTACATAGTAAGACCTTCATTTCAAAAAAGAAAGGTTCTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAGGGCTACATAGTAAGACCTTCATTTCAAAAAAGAAAGGTTCTT  442

seq1  GTTGTGGATGATTAAATGAGACTGTACAATATTTAGAAGTGTTATATATC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGGATGATTAAATGAGACTGTACAATATTTAGAAGTGTTATATATC  492

seq1  ACTGAAGCGTGTAATTGACATCAACTTGAACATTCTCAGAAACATTGCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCGTGTAATTGACATCAACTTGAACATTCTCAGAAACATTGCTC  542

seq1  AGTGTACAGGGTCACTGTCTTTCAAGAAAATTGATGCCTTAATACTTTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACAGGGTCACTGTCTTTCAAGAAAATTGATGCCTTAATACTTTGA  592

seq1  AGGAATATCCAACGGAGAAGGAGGCAGGAAAAATAGTAACAAGCAGCAAC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATCCAACGGAGAAGGAGGCAGGAAAAATAGTAACAAGCAGCAAC  642

seq1  CAAAGAAACATTACTTTTTTAAATGCCACAGGAAAGTTGTGTTGTTTTAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAACATTACTTTTTTAAATGCCACAGGAAAGTTGTGTTGTTTTAT  692

seq1  TTTGATGATACTGGACACAGAACGTGGAAGCGCTTTCTCATGCTGTGACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGATACTGGACACAGAACGTGGAAGCGCTTTCTCATGCTGTGACA  742

seq1  GGCTTACATAAGTGCCAGCAGTTCTGTCACTGTGTCTTGAGACATGAACA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTACATAAGTGCCAGCAGTTCTGTCACTGTGTCTTGAGACATGAACA  792

seq1  GTCAGCAGCAGAAATGCAGCCTGGTCCCAGCCTACTGGATCTCCTGTGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCAGCAGAAATGCAGCCTGGTCCCAGCCTACTGGATCTCCTGTGAT  842

seq1  GAAGACCAGAGCCATGGAGACACTCTTCACATTCACAATGACACATGTTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAGAGCCATGGAGACACTCTTCACATTCACAATGACACATGTTG  892

seq1  TGACCGAAAGCTGGAGGTGGAAATCTCTGGATATTTTCAAATGGTCCAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCGAAAGCTGGAGGTGGAAATCTCTGGATATTTTCAAATGGTCCAGA  942

seq1  AAGGCATTCAGAAAATTTCTGAGCCAGAAATTATTCCAAGATTCAGAAGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTCAGAAAATTTCTGAGCCAGAAATTATTCCAAGATTCAGAAGG  992

seq1  TAGACTCATTTTGCTAAATTGACATTTTAATCAGTATTTCCTTTCTTATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCATTTTGCTAAATTGACATTTTAATCAGTATTTCCTTTCTTATT  1042

seq1  TTCTAACAGGGCAACTGTGTTATTTAGACAATTCCTGCCAAGTAAGAATT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACAGGGCAACTGTGTTATTTAGACAATTCCTGCCAAGTAAGAATT  1092

seq1  TATGACTTTCACCTGTGTGGGGAAAGAAGTCTAAAGATGGATGCTTGGCC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTTTCACCTGTGTGGGGAAAGAAGTCTAAAGATGGATGCTTGGCC  1142

seq1  AAGAATTC  1152
      ||||||||
seq2  AAGAATTC  1150

seq1: chr13_63081444_63082036
seq2: B6Ng01-051J03.g_64_656

seq1  GAATTCATGAACATGGCTGTTCTGTCACATCTAGAAGACACTTGCTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAACATGGCTGTTCTGTCACATCTAGAAGACACTTGCTTAGG  50

seq1  CTCAGTACTCTCTGACTTTTAGGGTCTTTCTGTCTGTCCTTGAGCTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTACTCTCTGACTTTTAGGGTCTTTCTGTCTGTCCTTGAGCTGTAG  100

seq1  TCCCTAGGGTTAAGAATTTTGCAGTTCTGCAGTGTTTTCTGATTAGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGGGTTAAGAATTTTGCAGTTCTGCAGTGTTTTCTGATTAGTCTT  150

seq1  TACAAAGCATACTTTTGTAGTTACAAGGTTGTAAGGCAAAGCTTCCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGCATACTTTTGTAGTTACAAGGTTGTAAGGCAAAGCTTCCTTCA  200

seq1  GAAAAATGCAATCCAAGAAATTCCAGGGAGCTGTGACTTGGCACGCAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGCAATCCAAGAAATTCCAGGGAGCTGTGACTTGGCACGCAGGC  250

seq1  TGTAAGCCACATGCCAGCAGGCTGCATGAGGCTGGAACTCTGAAGCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCACATGCCAGCAGGCTGCATGAGGCTGGAACTCTGAAGCCATG  300

seq1  GTGAGGGCGAAATGGAAGTTTTCCTACTAAGAATTGTAGAATAAATTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGCGAAATGGAAGTTTTCCTACTAAGAATTGTAGAATAAATTGTA  350

seq1  TCCAGCTTCTGGAAACAGTAAGGGACAAGAAAGAGCCACAAGTCATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTTCTGGAAACAGTAAGGGACAAGAAAGAGCCACAAGTCATTTAT  400

seq1  TTCCCTCTTTCCTCAGTTCTCCTTGAAACAGGCTGGTAGATCTGGCCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTTTCCTCAGTTCTCCTTGAAACAGGCTGGTAGATCTGGCCTTA  450

seq1  TGTCTGGCACTACAGAGGTGTCAGGCATTAGTCACAGCTGCTTCACATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGCACTACAGAGGTGTCAGGCATTAGTCACAGCTGCTTCACATGG  500

seq1  GATCAGGTACAGGCCCTGCCTGTCCTGTGTCACCTGCTGGCTAGTGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGTACAGGCCCTGCCTGTCCTGTGTCACCTGCTGGCTAGTGATCT  550

seq1  TTGCAGAAGTAGCTGACCCTGTGTGTGGGTTTGGGGGTGGGTG  593
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGAAGTAGCTGACCCTGTGTGTGGGTTTGGGGGTGGGTG  593