BAC Information

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BAC

Clone NameB6Ng01-052A01
Chromosome13 (Build37)
Map Location 16,468,209 - 16,620,796
singlet/doubletdoublet
Overlap genenone
Upstream geneEG625121, Gli3, LOC665157, Inhba, LOC625181
Downstream geneLOC665191, 5033411D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052A01.bB6Ng01-052A01.g
ACCDH875486DH875487
length991497
definitionDH875486|Mus musculus domesticus DNA, BAC clone: B6Ng01-052A01, 5' end.DH875487|Mus musculus domesticus DNA, BAC clone: B6Ng01-052A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,468,209 - 16,469,205)(16,620,304 - 16,620,796)
sequence
gaattcctaatagtactcactggctggctttgactatcttctataactac
atcctctttatgtgctttgtactgcatcatccaaatgcctctttgccatc
ttccctaggactacatactctaatgtcttacccactaaggttgaactgca
atttgtcccctgactatatattattcatttttctgaccactgtgcccttg
cccttgcccccgacactcacatgcatgtcactgataaatttttgtgtcca
ttcatgctagtgtctcatttcctgttttgtccccaaattttcttcagcct
gggacccagcatattgctcacaggaaaacgttcctgacgtcccaagctgc
tccttttgttctttatgcacttagctctgttgatatatcacctcttctgc
tctccccttgttgtttacatacccatctcaccactgtgtgcctctgtagg
acccatgtgaagcttagtgatttttcctaatgatatatcaatatacttct
taattgatagggatttgtctcatgtgacttttcacacaattatttatttg
tataaactaaaacaaaaaacaaaaatagatggaatgcagcatctattggc
tttgccttgactccaactgcagattggaaatattaagaaaaaagtatcta
tattgaatatatatatatatatgtatgtatatatatatatatatatattc
tgtcattattgtctgtgtaataatatcgtataacaacgatttccaattgg
ataaactaaatttagtaattctataggtgggtttaaatatatatgagagt
aagagattcttgggtttatatgaaagtactatgttatttcataaaagatg
ttgtactggctagttttatgttaacttgaacagcttggagtttcacatat
aaaggagcttcgttgaggagattcctctatgagtccaactggaaggaatt
tctcattagtgtttaggggaaaggcctttgtggttggacca
gaattctctgatttttccttatttcaataatgattgtgtatgtacaattt
tacaaagaaaatgaacttggtttcacagttagaaaaagagagctcagttg
taagtgtatgcagttttactaattaaaaatgtagatacacactcttcaaa
gataactaagaaagatgaattgatacatcggaattaaataactaactaaa
tatctaaccatgaagtaaataaaaccacacagaattttttttctgtatga
atgcaaaaatacatagctcatctcagtgctgttttctttctttctttctt
tctttctttctttctttctttctttctttctttctctctctctctttctc
tctttctctctttctctctttctctctttctctctttctctctctttctc
tctttctctctttctctcttcctcactctctctctttctctctttctctc
tttctctctctctttctctctctttctctctctctggctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_16468209_16469205
seq2: B6Ng01-052A01.b_44_1034

seq1  GAATTCCTAATAGTACTCACTGGCTGGCTTTGACTATCTTCTATAACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAATAGTACTCACTGGCTGGCTTTGACTATCTTCTATAACTAC  50

seq1  ATCCTCTTTATGTGCTTTGTACTGCATCATCCAAATGCCTCTTTGCCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTTTATGTGCTTTGTACTGCATCATCCAAATGCCTCTTTGCCATC  100

seq1  TTCCCTAGGACTACATACTCTAATGTCTTACCCACTAAGGTTGAACTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAGGACTACATACTCTAATGTCTTACCCACTAAGGTTGAACTGCA  150

seq1  ATTTGTCCCCTGACTATATATTATTCATTTTTCTGACCACTGTGCCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCCCTGACTATATATTATTCATTTTTCTGACCACTGTGCCCTTG  200

seq1  CCCTTGCCCCCGACACTCACATGCATGTCACTGATAAATTTTTGTGTCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCCCCCGACACTCACATGCATGTCACTGATAAATTTTTGTGTCCA  250

seq1  TTCATGCTAGTGTCTCATTTCCTGTTTTGTCCCCAAATTTTCTTCAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTAGTGTCTCATTTCCTGTTTTGTCCCCAAATTTTCTTCAGCCT  300

seq1  GGGACCCAGCATATTGCTCACAGGAAAACGTTCCTGACGTCCCAAGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCCAGCATATTGCTCACAGGAAAACGTTCCTGACGTCCCAAGCTGC  350

seq1  TCCTTTTGTTCTTTATGCACTTAGCTCTGTTGATATATCACCTCTTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGTTCTTTATGCACTTAGCTCTGTTGATATATCACCTCTTCTGC  400

seq1  TCTCCCCTTGTTGTTTACATACCCATCTCACCACTGTGTGCCTCTGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCTTGTTGTTTACATACCCATCTCACCACTGTGTGCCTCTGTAGG  450

seq1  ACCCATGTGAAGCTTAGTGATTTTTCCTAATGATATATCAATATACTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGTGAAGCTTAGTGATTTTTCCTAATGATATATCAATATACTTCT  500

seq1  TAATTGATAGGGATTTGTCTCATGTGACTTTTCACACAATTATTTATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATAGGGATTTGTCTCATGTGACTTTTCACACAATTATTTATTTG  550

seq1  TATAAACTAAAACAAAAAACAAAAATAGATGGAATGCAGCATCTATTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTAAAACAAAAAACAAAAATAGATGGAATGCAGCATCTATTGGC  600

seq1  TTTGCCTTGACTCCAACTGCAGATTGGAAATATTAAGAAAAAAGTATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTTGACTCCAACTGCAGATTGGAAATATTAAGAAAAAAGTATCTA  650

seq1  TATTGAATATATATATATATATGTATGTATATATATATATATATATATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATATATATATATATATGTATGTATATATATATATATATATATTC  700

seq1  TGTCATTATTGTCTGTGTAATAATATCGTATAACAACCATTTCC-ATTGT  749
      ||||||||||||||||||||||||||||||||||||| |||||| |||| 
seq2  TGTCATTATTGTCTGTGTAATAATATCGTATAACAACGATTTCCAATTGG  750

seq1  ATAAACTAAATTTAGTAA-TCTATAGGT-GGTTTAAATATATATGAGAGT  797
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  ATAAACTAAATTTAGTAATTCTATAGGTGGGTTTAAATATATATGAGAGT  800

seq1  AAAGAGATTCTTGGG-TTATATGAAAGTACTATGTTATTTCATAAAAGAT  846
       |||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  -AAGAGATTCTTGGGTTTATATGAAAGTACTATGTTATTTCATAAAAGAT  849

seq1  GTTGTACTGGCTAGTTTTATGTTAACTTGACACAGC-TGGAGTTATCACA  895
      |||||||||||||||||||||||||||||| ||||| ||||||| |||||
seq2  GTTGTACTGGCTAGTTTTATGTTAACTTGA-ACAGCTTGGAGTT-TCACA  897

seq1  GAGAAAGGAGCTTCAGTTGAGGAAATTCCTCTATGAGATCCAACTGTAAG  945
       | ||||||||||| |||||||| ||||||||||||| |||||||| |||
seq2  TATAAAGGAGCTTC-GTTGAGGAGATTCCTCTATGAG-TCCAACTGGAAG  945

seq1  GCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCTTTGTGGGTGGGAC  995
      | | |||||| ||||||| | |  ||||||||| ||||||| ||| ||||
seq2  G-AATTTCTC-ATTAGTGTTTA--GGGGAAAGG-CCTTTGT-GGTTGGAC  989

seq1  CA  997
      ||
seq2  CA  991

seq1: chr13_16620304_16620796
seq2: B6Ng01-052A01.g_66_562 (reverse)

seq1  --AGAGAGAG--AGAAAGAGAGAAAGAGAGAGAAAGAGAGAGAGAAAGAG  46
        ||||||||  ||| ||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGCCAGAGAGAGAGAAAGAGAGAGAAAGAGAGAGAGAAAGAG  50

seq1  AGAAAGAGAGAAAGAGAGGAAGAGAGGAAGAGAGAAAGAGAGAAAGAGAG  96
      ||||||||||||||||||  || |||||||||||||||||||||||||||
seq2  AGAAAGAGAGAAAGAGAGAGAGTGAGGAAGAGAGAAAGAGAGAAAGAGAG  100

seq1  AAAGAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAGAAAGAGAG  150

seq1  AAAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  200

seq1  AAAGAAAGAAAGAAAACAGCACTGAGATGAGCTATGTATTTTTGCATTCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAACAGCACTGAGATGAGCTATGTATTTTTGCATTCA  250

seq1  TACAGAAAAAAAATTCTGTGTGGTTTTATTTACTTCATGGTTAGATATTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAAAAAAATTCTGTGTGGTTTTATTTACTTCATGGTTAGATATTT  300

seq1  AGTTAGTTATTTAATTCCGATGTATCAATTCATCTTTCTTAGTTATCTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTTATTTAATTCCGATGTATCAATTCATCTTTCTTAGTTATCTTT  350

seq1  GAAGAGTGTGTATCTACATTTTTAATTAGTAAAACTGCATACACTTACAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTGTGTATCTACATTTTTAATTAGTAAAACTGCATACACTTACAA  400

seq1  CTGAGCTCTCTTTTTCTAACTGTGAAACCAAGTTCATTTTCTTTGTAAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCTCTTTTTCTAACTGTGAAACCAAGTTCATTTTCTTTGTAAAA  450

seq1  TTGTACATACACAATCATTATTGAAATAAGGAAAAATCAGAGAATTC  493
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACATACACAATCATTATTGAAATAAGGAAAAATCAGAGAATTC  497