BAC Information

Click to search

BAC

Clone NameB6Ng01-052E02
Chromosome13 (Build37)
Map Location 33,278,546 - 33,279,712
singlet/doubletsinglet
Overlap genenone
Upstream geneGmds, Wrnip1, Serpinb1a, Serpinb1-ps1, Serpinb1c, Serpinb6b, Serpinb9, Serpinb9b, Serpinb1b, LOC628301, Serpinb9c
Downstream geneSerpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik, 3110004L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052E02.bB6Ng01-052E02.g
ACCDH875661DH875662
length1,1541,131
definitionDH875661|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E02, 5' end.DH875662|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatttaatgtgccacaaactatgaatcccatataagagtcatttt
caaacactttctctaaagtgaacaaattaattattttaaggtgggtaaac
aggaacacacatgtaatgccagaatccagagtcaaagataagtatatctc
tgtgagtgccaagccagtctggtttatattatgttccagacaacatggac
tacatagtgaggctctgtcataaacactcaagaatcaggtctattttcat
atagggtcagaatctgtgctctggatgttctaaatgcaggcttggcaacc
tgtcttttgaaaaggtattaaaagagacaaattcatagtgaaaagaggaa
aaagcaggattattcaatatggaaaaaatggagggggggactgactatcc
agtgaggtccgaagcctttcagtgagattcctgacctgagatcaaggtaa
acataactgagttgatagtgctaagctgccaaggtgtggtcctgtctatc
attggtccatccttgtatgaccccactctgtcctgcacgggaacttccaa
ggcaaaatttactgtggggtctacttgggttctgaagggaagtgtgtctc
cccatttgttgctggtgtgccaaataccagaaactgggattttagtacaa
ccttttgctttactgctaactctcctattaacagaaaccaggagaggaaa
agaattatgtccttggattagatacattgaacatagtgtacaatactctt
tggttgccactgaaccagtatgtttgggaccaacatctcaaagcaaagga
acaagtttaaagagattcttactagccaataagaacaattctgaacatca
agaaatgcaaacaaagaaacaaataccagtaaactgaaatacccagtaca
aaccatgagtatgtatgctcaaaggattggaacctggatctatatcttca
gcacctttgtaagtctgaccacagctaacagccaggatacactctgtgtt
tcttaacaattctagaggtgtgttcttttctctgcagtagaactcctttc
cccttttatgttctacatgttctcaccaaccattggggactatgagcttc
ttattccactaaagctggcaggctgggaaattggaacttggttatatttg
tggg
gaattctgtttagctcataccccattttaaaattgagttatgtggtttgt
tggtgtctaacttcttgagtttttaaaatatattttggacattagttgtc
tatcagatgtagaattggtgaagactgtttcccaatctgtaggctgccat
tttgtcttattgacaatgtactttgacttacagaagcttggcaatttcat
gaggtctaatttatgaattgttgatcttacaggctgagttattggtgttc
tgctcaggaagttagatcttataccaatgcttcaaggctattccccacat
gttcttctattagatttagtgtgtccagttttatgttgagacccttgatt
tacttgtgtagagtgatacttatggatctattttcatttttctactagca
gcaatcaaaatagatcaacatcatttgttgaagatgttttctttcttcca
ttgtatggttttggcttctttgccaaaaatccagggtccatatgcttgtg
ggtttatttctgggtcttcaatttgattcccttgatcaacctgtctattt
ctatatttatttcatgcagttttattactgtttctctgcagtacagcttg
agatcagggatagtaataatttcagaagttttttattgtacagaattgtt
atagccatccttggtttttacttttccatgtggagttgagaatttttctc
tcaaggtctgaaaagtattgtgccagaattttgaaggaaatggcattgaa
tttgtattttgcttttggtaagatgagttttactatattaatcataccaa
tccatgagcacgggaaatctttccatcttctgatatcttctttaatttct
ttcttcagagacttgcagttttgtcatacaggtctttcacttgtttggtg
ggagtatagcaagatattttatatattgtggctattgtgaagattatatt
ttccctgatttctggctcagcccatttatcatttgattaaaggaaggcta
ctgatcttttcttttattatggatatttatgtatttacattcaatggtat
cccctttccacttccctcagaaactcatcacatcttacgtcccctgcgtt
catataaggtgatcctcccaaaggaccatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_33278546_33279712
seq2: B6Ng01-052E02.b_43_1196 (reverse)

seq1  CCCACAAATATTAACCAAAGTCCCATTTCCCAGCCTGCCAGCTTTAGTGG  50
      |||||||||| |||||||  ||| ||||||||||||||||||||||||||
seq2  CCCACAAATA-TAACCAAGTTCCAATTTCCCAGCCTGCCAGCTTTAGTGG  49

seq1  ACTAAGAAGCTTCCATTAAGTCTCCCAAATGGTGTGTGAGAACATGTAGA  100
      | |||||||||  |||  ||  |||| ||||||  |||||||||||||||
seq2  AATAAGAAGCT--CAT--AG--TCCCCAATGGTTGGTGAGAACATGTAGA  93

seq1  ACATAAAAGGGGAAAGGAAGTTTCTACCTGCAAGAGAAAAGAACACACCT  150
      ||||||||||||||||||   ||||| |||| ||||||||||||||||||
seq2  ACATAAAAGGGGAAAGGA--GTTCTA-CTGC-AGAGAAAAGAACACACCT  139

seq1  CTAGGAATTGTTAAGAAACACAGAGTGTATCCTGGCTGTTAGCTGTGGTC  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTA-GAATTGTTAAGAAACACAGAGTGTATCCTGGCTGTTAGCTGTGGTC  188

seq1  AGACTTACAAAGGTGCTGAAGATATAGATCCAGGTTCCAATCCTTTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTACAAAGGTGCTGAAGATATAGATCCAGGTTCCAATCCTTTGAGC  238

seq1  ATACATACTCATGGTTTTGTACTGGGTATTTCAGTTTACTGGTATTTGTT  300
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATACATACTCATGG-TTTGTACTGGGTATTTCAGTTTACTGGTATTTGTT  287

seq1  TCTTTGTTTGCATTTCTTGATGTTCAGAATTGTTCTTATTGGCTAGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTTTGCATTTCTTGATGTTCAGAATTGTTCTTATTGGCTAGTAAG  337

seq1  AATCTCTTTAAACTTGTTCCTTTGCTTTGAGATGTTGGTCCCAAACATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTTAAACTTGTTCCTTTGCTTTGAGATGTTGGTCCCAAACATAC  387

seq1  TGGTTCAGTGGCAACCAAAGAGTATTGTACACTATGTTCAATGTATCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGTGGCAACCAAAGAGTATTGTACACTATGTTCAATGTATCTAA  437

seq1  TCCAAGGACATAATTCTTTTCCTCTCCTGGTTTCTGTTAATAGGAGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGACATAATTCTTTTCCTCTCCTGGTTTCTGTTAATAGGAGAGTT  487

seq1  AGCAGTAAAGCAAAAGGTTGTACTAAAATCCCAGTTTCTGGTATTTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAAAGCAAAAGGTTGTACTAAAATCCCAGTTTCTGGTATTTGGCA  537

seq1  CACCAGCAACAAATGGGGAGACACACTTCCCTTCAGAACCCAAGTAGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCAACAAATGGGGAGACACACTTCCCTTCAGAACCCAAGTAGACC  587

seq1  CCACAGTAAATTTTGCCTTGGAAGTTCCCGTGCAGGACAGAGTGGGGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTAAATTTTGCCTTGGAAGTTCCCGTGCAGGACAGAGTGGGGTCA  637

seq1  TACAAGGATGGACCAATGATAGACAGGACCACACCTTGGCAGCTTAGCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGGATGGACCAATGATAGACAGGACCACACCTTGGCAGCTTAGCAC  687

seq1  TATCAACTCAGTTATGTTTACCTTGATCTCAGGTCAGGAATCTCACTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACTCAGTTATGTTTACCTTGATCTCAGGTCAGGAATCTCACTGAA  737

seq1  AGGCTTCGGACCTCACTGGATAGTCAGTCCCCCCCTCCATTTTTTCCATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCGGACCTCACTGGATAGTCAGTCCCCCCCTCCATTTTTTCCATA  787

seq1  TTGAATAATCCTGCTTTTTCCTCTTTTCACTATGAATTTGTCTCTTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATAATCCTGCTTTTTCCTCTTTTCACTATGAATTTGTCTCTTTTAA  837

seq1  TACCTTTTCAAAAGACAGGTTGCCAAGCCTGCATTTAGAACATCCAGAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTCAAAAGACAGGTTGCCAAGCCTGCATTTAGAACATCCAGAGC  887

seq1  ACAGATTCTGACCCTATATGAAAATAGACCTGATTCTTGAGTGTTTATGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATTCTGACCCTATATGAAAATAGACCTGATTCTTGAGTGTTTATGA  937

seq1  CAGAGCCTCACTATGTAGTCCATGTTGTCTGGAACATAATATAAACCAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTCACTATGTAGTCCATGTTGTCTGGAACATAATATAAACCAGA  987

seq1  CTGGCTTGGCACTCACAGAGATATACTTATCTTTGACTCTGGATTCTGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTGGCACTCACAGAGATATACTTATCTTTGACTCTGGATTCTGGC  1037

seq1  ATTACATGTGTGTTCCTGTTTACCCACCTTAAAATAATTAATTTGTTCAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTGTGTTCCTGTTTACCCACCTTAAAATAATTAATTTGTTCAC  1087

seq1  TTTAGAGAAAGTGTTTGAAAATGACTCTTATATGGGATTCATAGTTTGTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGAAAGTGTTTGAAAATGACTCTTATATGGGATTCATAGTTTGTG  1137

seq1  GCACATTAAATGAATTC  1167
      |||||||||||||||||
seq2  GCACATTAAATGAATTC  1154