BAC Information

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BAC

Clone NameB6Ng01-052L10
Chromosome13 (Build37)
Map Location 53,353,547 - 53,510,367
singlet/doubletdoublet
Overlap geneRor2, Sptlc1
Upstream geneLOC100040321, Diras2, LOC100040572, Syk, Auh, Nfil3
Downstream geneLOC100040421, Msx2, EG432760, E130119H09Rik, Drd1a, Sfxn1, Hrh2, LOC100040535, Cplx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052L10.bB6Ng01-052L10.g
ACCDH875983DH875984
length579346
definitionDH875983|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L10, 5' end.DH875984|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,353,547 - 53,354,125)(53,510,022 - 53,510,367)
sequence
gaattctagaactctatgccatctcctgtcctctgctggcacttgcaaat
acatactaacacacacacagacagagtaaatctttcaagaaaaaaattaa
tctgagttctgatgggagacagccagaccacggggacactacacactaac
ttgaatgtacaagttagctttcatagatgcagtccttgtggtacctagag
acatatcctgtgccatcttcagtagtcaatggtataaaaaaaaatcgttg
aaaatatcctctaggacttggggtatatacagatcaatagttatattcta
gcatgggtgaggtctcagaatggggggggggtgctttgtagatttggagg
atctttgaaagtgtaacaagaaaaatataatcttttaatgactttgaaca
gggaacacagaactgaggcagcctttgagaaattattctaaaccacgccc
atctctcaagctctcttaaccgagcacaggtcctaagagtttcctatcaa
ctcatttagtgccccctacgaccatctgacaaagtcagccagcagcaacc
ttcactcccaagagacgggacgcttggac
gaattctcagtgtcactcactcacagcctgctggtctttggacacaggca
ttgtgccagcattactcccaaggggaagaaaaggaggacacctgagaagg
gttgaggggatacactatgacgtcacagcaggtcatgctaggcctccagc
ctgtcttcccaggagaccagcagaacaggccatgtcacaggactggttca
cacagtagaagggacttgtctaaagctcaggtactctttggatctctacg
caggcaagtaagtgtcccttgcttggcctcccttggctacctgcccaggt
ttccttatcccagtctttgtaaacagggggatggggagggggggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_53353547_53354125
seq2: B6Ng01-052L10.b_42_620

seq1  GAATTCTAGAACTCTATGCCATCTCCTGTCCTCTGCTGGCACTTGCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAACTCTATGCCATCTCCTGTCCTCTGCTGGCACTTGCAAAT  50

seq1  ACATACTAACACACACACAGACAGAGTAAATCTTTCAAGAAAAAAATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTAACACACACACAGACAGAGTAAATCTTTCAAGAAAAAAATTAA  100

seq1  TCTGAGTTCTGATGGGAGACAGCCAGACCACGGGGACACTACACACTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTCTGATGGGAGACAGCCAGACCACGGGGACACTACACACTAAC  150

seq1  TTGAATGTACAAGTTAGCTTTCATAGATGCAGTCCTTGTGGTACCTAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTACAAGTTAGCTTTCATAGATGCAGTCCTTGTGGTACCTAGAG  200

seq1  ACATATCCTGTGCCATCTTCAGTAGTCAATGGTATAAAAAAAAATCGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCCTGTGCCATCTTCAGTAGTCAATGGTATAAAAAAAAATCGTTG  250

seq1  AAAATATCCTCTAGGACTTGGGGTATATACAGATCAATAGTTATATTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCCTCTAGGACTTGGGGTATATACAGATCAATAGTTATATTCTA  300

seq1  GCATGGGTGAGGTCTCAGAATGGGGGGGGGGTGCTTTGTAGATTTGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGTGAGGTCTCAGAATGGGGGGGGGGTGCTTTGTAGATTTGGAGG  350

seq1  ATCTTTGAAAGTGTAACAAGAAAAATATAATCTTTTAATGACTTTGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGAAAGTGTAACAAGAAAAATATAATCTTTTAATGACTTTGAACA  400

seq1  GGGAACAGAGAACAGAGGCAGCCTTTGAGAAATTATTCTAAACCACGCCC  450
      ||||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGAACACAGAACTGAGGCAGCCTTTGAGAAATTATTCTAAACCACGCCC  450

seq1  ATCTCTCAAGCTCTCTTAGCCGAGCACTGGTCCTAAGAGTTTCCTATTAA  500
      |||||||||||||||||| |||||||| ||||||||||||||||||| ||
seq2  ATCTCTCAAGCTCTCTTAACCGAGCACAGGTCCTAAGAGTTTCCTATCAA  500

seq1  CTCATTTAGTGCCCCCAAAGACCATCCCACAAAGCAAGCCAGCAGCAACA  550
      |||||||||||||||| | |||||||  ||||||  ||||||||||||| 
seq2  CTCATTTAGTGCCCCCTACGACCATCTGACAAAGTCAGCCAGCAGCAACC  550

seq1  CTCACCCCCAAGAGAGGGGATGTTTGGAC  579
       |||| ||||||||| |||| | ||||||
seq2  TTCACTCCCAAGAGACGGGACGCTTGGAC  579

seq1: chr13_53510022_53510367
seq2: B6Ng01-052L10.g_65_410 (reverse)

seq1  TACCCCCCCTCCCCATCCCCCTGTTTACAAAGACTGGGATAAGGAAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCCCTCCCCATCCCCCTGTTTACAAAGACTGGGATAAGGAAACCT  50

seq1  GGGCAGGTAGCCAAGGGAGGCCAAGCAAGGGACACTTACTTGCCTGCGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGTAGCCAAGGGAGGCCAAGCAAGGGACACTTACTTGCCTGCGTA  100

seq1  GAGATCCAAAGAGTACCTGAGCTTTAGACAAGTCCCTTCTACTGTGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCAAAGAGTACCTGAGCTTTAGACAAGTCCCTTCTACTGTGTGAA  150

seq1  CCAGTCCTGTGACATGGCCTGTTCTGCTGGTCTCCTGGGAAGACAGGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCCTGTGACATGGCCTGTTCTGCTGGTCTCCTGGGAAGACAGGCTG  200

seq1  GAGGCCTAGCATGACCTGCTGTGACGTCATAGTGTATCCCCTCAACCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTAGCATGACCTGCTGTGACGTCATAGTGTATCCCCTCAACCCTT  250

seq1  CTCAGGTGTCCTCCTTTTCTTCCCCTTGGGAGTAATGCTGGCACAATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTGTCCTCCTTTTCTTCCCCTTGGGAGTAATGCTGGCACAATGCC  300

seq1  TGTGTCCAAAGACCAGCAGGCTGTGAGTGAGTGACACTGAGAATTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCAAAGACCAGCAGGCTGTGAGTGAGTGACACTGAGAATTC  346