BAC Information

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BAC

Clone NameB6Ng01-052L16
Chromosome13 (Build37)
Map Location 89,707,357 - 89,806,709
singlet/doubletdoublet
Overlap geneHapln1, EG667266, Vcan
Upstream geneEdil3
Downstream geneLOC100042940, Xrcc4, Tmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052L16.bB6Ng01-052L16.g
ACCDH875995DH875996
length1,0031,186
definitionDH875995|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L16, 5' end.DH875996|Mus musculus domesticus DNA, BAC clone: B6Ng01-052L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,805,343 - 89,806,709)(89,707,357 - 89,708,547)
sequence
gaattccttcaccttgtgtcctaagagttctgatattccgattgaaattc
acctatcttaaagataatatattagactacttactgccactttaaaaata
aatgctttattaacgctttgagaattttatacaacatgttttgatcatat
tcatgcccactcatttcctaaattcacttgaaatatttttatatattttc
tggtaaatttacacatggagatagtacttgtagatcatattcctgcttcc
caactcctcccagacactctaccttgtgcttcttcttttttttttttttt
tgagacagggtttctctgtgtagccctggctgtcctggaactcactttgt
agaccaggctggcctcaaactcagaaatccgcctgcctctgcctcccgag
tgctgggactaaaggcgtgcgccaccacatcgagctccttgtgcttcttt
tgacttctttcagaaattctagtgtatacatacgacaacctcacaaaaac
aaaccccaaaacaaaaacaaagacaaaaaacacaccaaaaaaaaaaaaaa
aaaacactgaaaatctaaaaagtcaaagaacaacaagacaaaacaaaacc
aaaaaacacaaatattattttgaagtagtgcattgggagaaggtgaacca
gcttatgcttaagagcctctcttacacctgtctggtcctccttgctaccc
agacattcacacagttccccagagttaattggtctttatttgtgccaatc
aatgcagcaacagttaatgcctgatagataaccttgtattctttcttcta
atgaaagcagacttaaagcagaacccaaacctactccccctcccctttta
ggaatagaggaaacttcttgcttatcctaagtctacataagtctacaaaa
aaggtttaatagtcctttgtaaagagcagttatttgttttttatggaaag
gtgaatagtaaagtacatgctgggtggatgtcatgactgggaactgatta
tgc
gaattctttcagttagaagcagagggagggaggatgggatgggggtttcc
aggagaggggaaaacggggaaaggggttatcatttgaaatgtaaataaag
aaaatatctaataaaaaatcagaaaaagaaaaaagaagagaagagaagag
aagagaagagaagagaagagaagagaagagaagagaagagaagagaagag
aagagaagagaaaaaaaggaaataaaagagaaatgctcttagatatcact
gtaatttaaaaaccaggggtctggagaaatggctcagtatgtaaagaggc
ttagtctgagcatgaggacatgagtttgggtgtgcagtgaccttgggaaa
agccaggcatagtctatatgtctacaggggactattctgccatacttctg
ttcatttggattttgtgctttcctggctctatggagcaaagacaggcaaa
tactgaggactcatcagccagcagttcttccctaaactacagtctccagg
ttcagtgagagagcctgtctaccaacactaagatagataaacgattaatg
aagacatcctagggtcagattctgggtcccatgtgtagttgtactgatga
atacctcacacacacatgcacaacacagacatacaaaactatgacacaaa
atttaaaaatcattgaaatgaattttaagatggtattttgcatcacacac
aatccagcagtcactaggtctcttttaacaaagtccttgggtgaatagtg
tatttttcctgggacccgcgattacatgtgccttaccatgggatgttgac
cagctgtggagcagaccagcatcaagtcttttgaagatgtttataataag
gcaatgaaaaaatagagatgggacaaagtggagagggagagaagtgtgct
accagagagctttactagattttgtgtttcatggccaagcataaccagca
actcagtaagtcacgattgtttatgtttttaactactagtcagaatgagc
aaaaacagtaacaatcaaaggtacttcaagtctttttcaacctggtcatg
atcagggtttctgcctacagcaaatgtaaacttgtcttggttcatgctat
gtgtcagttcctgcttgaccgagagccaatgtgattctgtcaaattctgt
cacttctgcatatggcgcaacatgtgattttcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89805343_89806709
seq2: B6Ng01-052L16.b_41_1025 (reverse)

seq1  CATGACATCCCAGCCTGGCAGCATCCTAACCCCTCAGGGAAGGACCTCCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTGAAAGCAACTGAATGGGTTGCTCTCTGAATGGGTGCAGAATTAGTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTTGCCCATGTCTGGAGTTCCTCCACCTGTCTCAGTCAGCATGGCAGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGCTGACTGACAGGGTTGGATGGGAGGCAGAGTTAGCTTTGAGCAATT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTCAATAATGGATTACAAGGGGAATCTTGTCGTGCATAACCATATATGGA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GTCTAGAGGGTCAAATACCCATTTATACCTAGTACATGATATTTCATCTT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TTAAAATATGTGACACATGATCATCATCAATGATATCAAAATCTCAGCAA  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTAATCAGTGTCCCAGTCATGAACAATCCAACCCAAGCAATGTACTTTAC  400
                       |||||   |||||  || ||| |||||||||||
seq2  -----------------CATGA--CATCCA--CCCAGC-ATGTACTTTAC  28

seq1  TTAATTCACCTTTCCATACACAAAAACAAATAACTGCCTCTTTACAAAGG  450
      |  |||||||||||||||   ||||||||||||||| |||||||||||||
seq2  T--ATTCACCTTTCCATA---AAAAACAAATAACTG-CTCTTTACAAAGG  72

seq1  ACTATTAAAACCTTTTTGTAGACTTATGTAAGACTTAGGAATAAGCAAGA  500
      ||||||||| | ||||||||||||||||| ||||||||| ||||||||||
seq2  ACTATTAAACCTTTTTTGTAGACTTATGT-AGACTTAGG-ATAAGCAAGA  120

seq1  AGTTTCCTCTATTCCTTAAAAGGGGAGGGGGAGTAGGTTTGGGTTCTGCT  550
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTCTATTCC-TAAAAGGGGAGGGGGAGTAGGTTTGGGTTCTGCT  169

seq1  TTAAGTCCTGCTTTCATTAGAAGAAAGAATACAAGGTTATCTATCAGGCA  600
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGT-CTGCTTTCATTAGAAGAAAGAATACAAGGTTATCTATCAGGCA  218

seq1  TTAACTGTTGCTGCATTGATTGGCACAAATAAAGACCAATTAACTCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTTGCTGCATTGATTGGCACAAATAAAGACCAATTAACTCTGGG  268

seq1  GAACTGTGTGAATGTCTGGGTAGCAAGGAGGACCAGACAGGTGTAAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTGTGAATGTCTGGGTAGCAAGGAGGACCAGACAGGTGTAAGAGA  318

seq1  GGCTCTTAAGCATAAGCTGGTTCACCTTCTCCCAATGCACTACTTCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTAAGCATAAGCTGGTTCACCTTCTCCCAATGCACTACTTCAAAA  368

seq1  TAATATTTGTGTTTTTTGGTTTTGTTTTGTCTTGTTGTTCTTTGACTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTGTGTTTTTTGGTTTTGTTTTGTCTTGTTGTTCTTTGACTTTT  418

seq1  TAGATTTTCAGTGTTTTTTTTTTTTTTTTTTGGTGTGTTTTTTGTCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTCAGTGTTTTTTTTTTTTTTTTTTGGTGTGTTTTTTGTCTTTG  468

seq1  TTTTTGTTTTGGGGTTTGTTTTTGTGAGGTTGTCGTATGTATACACTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTGGGGTTTGTTTTTGTGAGGTTGTCGTATGTATACACTAGA  518

seq1  ATTTCTGAAAGAAGTCAAAAGAAGCACAAGGAGCTCGATGTGGTGGCGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAAAGAAGTCAAAAGAAGCACAAGGAGCTCGATGTGGTGGCGCA  568

seq1  CGCCTTTAGTCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTTAGTCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTT  618

seq1  TGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACAC  668

seq1  AGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAGAAGAAGCACAAGGTAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTCAAAAAAAAAAAAAAAAGAAGAAGCACAAGGTAGA  718

seq1  GTGTCTGGGAGGAGTTGGGAAGCAGGAATATGATCTACAAGTACTATCTC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGGAGGAGTTGGGAAGCAGGAATATGATCTACAAGTACTATCTC  768

seq1  CATGTGTAAATTTACCAGAAAATATATAAAAATATTTCAAGTGAATTTAG  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTAAATTTACCAGAAAATATATAAAAATATTTCAAGTGAATTTAG  818

seq1  GAAATGAGTGGGCATGAATATGATCAAAACATGTTGTATAAAATTCTCAA  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGTGGGCATGAATATGATCAAAACATGTTGTATAAAATTCTCAA  868

seq1  AGCGTTAATAAAGCATTTATTTTTAAAGTGGCAGTAAGTAGTCTAATATA  1300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTAATAAAGCATTTATTTTTAAAGTGGCAGTAAGTAGTCTAATATA  918

seq1  TTATCTTTAAGATAGGTGAATTTCAATCGGAATATCAGAACTCTTAGGAC  1350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTTAAGATAGGTGAATTTCAATCGGAATATCAGAACTCTTAGGAC  968

seq1  ACAAGGTGAAGGAATTC  1367
      |||||||||||||||||
seq2  ACAAGGTGAAGGAATTC  985

seq1: chr13_89707357_89708547
seq2: B6Ng01-052L16.g_66_1251

seq1  GAATTCTTTCAGTTAGAAGCAGAGGGAGGGAGGATGGGATGGGGGTTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGTTAGAAGCAGAGGGAGGGAGGATGGGATGGGGGTTTCC  50

seq1  AGGAGAGGGGAAAACGGGGAAAGGGGTTATCATTTGAAATGTAAATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGGGAAAACGGGGAAAGGGGTTATCATTTGAAATGTAAATAAAG  100

seq1  AAAATATCTAATAAAAAATCAGAAAAAGAAAAAAGAAGAGAAGAGAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCTAATAAAAAATCAGAAAAAGAAAAAAGAAGAGAAGAGAAGAG  150

seq1  AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG  200

seq1  AAGAGAAGAGAAAAAAAGGAAATAAAAGAGAAATGCTCTTAGATATCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAAGAGAAAAAAAGGAAATAAAAGAGAAATGCTCTTAGATATCACT  250

seq1  GTAATTTAAAAACCAGGGGTCTGGAGAAATGGCTCAGTATGTAAAGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTAAAAACCAGGGGTCTGGAGAAATGGCTCAGTATGTAAAGAGGC  300

seq1  TTAGTCTGAGCATGAGGACATGAGTTTGGGTGTGCAGTGACCTTGGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTGAGCATGAGGACATGAGTTTGGGTGTGCAGTGACCTTGGGAAA  350

seq1  AGCCAGGCATAGTCTATATGTCTACAGGGGACTATTCTGCCATACTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCATAGTCTATATGTCTACAGGGGACTATTCTGCCATACTTCTG  400

seq1  TTCATTTGGATTTTGTGCTTTCCTGGCTCTATGGAGCAAAGACAGGCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTGGATTTTGTGCTTTCCTGGCTCTATGGAGCAAAGACAGGCAAA  450

seq1  TACTGAGGACTCATCAGCCAGCAGTTCTTCCCTAAACTACAGTCTCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGGACTCATCAGCCAGCAGTTCTTCCCTAAACTACAGTCTCCAGG  500

seq1  TTCAGTGAGAGAGCCTGTCTACCAACACTAAGATAGATAAACGATTAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGAGAGAGCCTGTCTACCAACACTAAGATAGATAAACGATTAATG  550

seq1  AAGACATCCTAGGGTCAGATTCTGGGTCCCATGTGTAGTTGTACTGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCCTAGGGTCAGATTCTGGGTCCCATGTGTAGTTGTACTGATGA  600

seq1  ATACCTCACACACACATGCACAACACAGACATACAAAACTATGACACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCACACACACATGCACAACACAGACATACAAAACTATGACACAAA  650

seq1  ATTTAAAAATCATTGAAATGAATTTTAAGATGGTATTTTGCATCACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATCATTGAAATGAATTTTAAGATGGTATTTTGCATCACACAC  700

seq1  AATCCAGCAGTCACTAGGTCTCTTTTAACAAAGTCCTTGGGTGAATAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAGCAGTCACTAGGTCTCTTTTAACAAAGTCCTTGGGTGAATAGTG  750

seq1  TA-TTTTCCTGGGACCCGCGATTACATGTGCCTTACCATGGGATGTTGAC  799
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCCTGGGACCCGCGATTACATGTGCCTTACCATGGGATGTTGAC  800

seq1  CAGCTGTGGAGCAGACCAGCATCAAGTCTTTTGAAGATGTTTATAATAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGGAGCAGACCAGCATCAAGTCTTTTGAAGATGTTTATAATAAG  850

seq1  GCAATGAAAAAATAGAGATGGGACAAAGTGGAGAGGGGAGAGAAGTGTGG  899
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  GCAATGAAAAAATAGAGATGGGACAAAGTGGAGA-GGGAGAGAAGTGT-G  898

seq1  CTACCAGAGAGCTTTACTAGATCTTTGTGTTTCATGGCCAAGCATAACCA  949
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTACCAGAGAGCTTTACTAGAT-TTTGTGTTTCATGGCCAAGCATAACCA  947

seq1  GCAACTCAGTAAGTCACCGATTGTTTATG-TTTTAACTACTAGTCAGAAT  998
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  GCAACTCAGTAAGTCA-CGATTGTTTATGTTTTTAACTACTAGTCAGAAT  996

seq1  GAGCAAAAACAGT-ACAATCAGAAGGTACTTCAAGTCTTTTTCAACCTGG  1047
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  GAGCAAAAACAGTAACAATCA-AAGGTACTTCAAGTCTTTTTCAACCTGG  1045

seq1  TCATGATC-GGGTTCCTGCTTAACGCAGATGT-GACTTGTC-TGGTCCAT  1094
      |||||||| ||||| |||| ||  ||| ||||  ||||||| |||| |||
seq2  TCATGATCAGGGTTTCTGCCTACAGCAAATGTAAACTTGTCTTGGTTCAT  1095

seq1  GCTATGTGTCAGTT-CTGCACTAGGACGATGTAAGCAATGTGTTTCTGTC  1143
      |||||||||||||| |||  || |  |||   |  ||||||| |||||||
seq2  GCTATGTGTCAGTTCCTG--CTTGACCGA--GAGCCAATGTGATTCTGTC  1141

seq1  ACATTCTGTCACTTCTGCA-ATGGCAGCAAAGCAGTTGTATTTTCAGAA  1191
      | ||||||||||||||||| ||||| ||||  ||  || ||||||||||
seq2  AAATTCTGTCACTTCTGCATATGGC-GCAA--CATGTG-ATTTTCAGAA  1186