BAC Information

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BAC

Clone NameB6Ng01-052N09
Chromosome13 (Build37)
Map Location 119,607,755 - 119,726,627
singlet/doubletdoublet
Overlap genenone
Upstream geneHcn1, LOC100041695, LOC674926, Mrps30, LOC668309, LOC100041278, Fgf10
Downstream geneLOC100041298, LOC100041757, Nnt, Paip1, LOC100041802, 4833420G17Rik, 3110070M22Rik, EG633640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052N09.bB6Ng01-052N09.g
ACCDH876070DH876071
length1,1871,104
definitionDH876070|Mus musculus domesticus DNA, BAC clone: B6Ng01-052N09, 5' end.DH876071|Mus musculus domesticus DNA, BAC clone: B6Ng01-052N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,607,755 - 119,608,961)(119,725,511 - 119,726,627)
sequence
gaattcctactgtactgtgaaaggtataggtcacaactcaagctaattca
aatagtttttttttactggatatgaaaaacttcttgcagtttaaatgcat
ctctgttgaccacataagagtcttcactattgaataacaatatcaaagag
attttttattcttcacatctactaggactgtttaaatatctaaattccag
tctaaaatcctattaatgacccacatgtatttcagttggctttatgtgag
ctgagatcactggacagaaggcctttaacaatgtgttctgctaactagat
cccaaaactcaaactgtaagttcaaaacaaccttgtaaaacctaatagat
gcgatttatgtgtactgtccagccctcaactttgtgaaattctttttcca
gtggcatcattcatataaaagaaatgtgcttgttttctttatttttcttc
tctttcccacatttgtggtaactattcactcttatttattaatattataa
aactgaaagtatagtactctgaacaatggtgtggctactgtggctggaaa
aacagagggttctgcttaaaaagagttagccaccagagcaaataaactgg
ttttgaactacacaagctgcctctgggctacttcaccctgtattgagggg
gaatcatggggggtagacagaattcctggacatgaatatcagctattgct
gacagttgattaagctttgcctactgaactccctttcgttctgtttctga
gttaaaacttctataggtgagaaactaataaccttatgtaatgtgcaaag
ccagcctcttccatctcagctgcattcccaaactattttgatagaagcaa
caaaaggctacagttccttttacctacttagcgtcacttcgtatttcaat
ttttttttctttaatttgaatggtcatttttctctgaaaccatgaagcac
taaaatcagcataaaatcgaaagccatagagtaaactgcgatagttttga
gcatgtagcaattggtttttcactgtactccaccagagagcagaggacag
cttactatcattgatgatcaggaatgatcttgagactgctaagtacttcc
acgcccttggtttgaaccatatactcctttacattgacagactcgaaact
ttatgcatttcaaccattcctctatatgtatgtgtct
gaattctctagtaaggatgtcatgtgaacatggaagaagaaaaccatagg
atgcaagcaacatgttgcctttccaaagtcacttaagactacaaattcta
tgatagtagaaggtatcaaattgtgataagctgattggggatagaatagg
taaatatttagccagccacaaagacttccatcttttccttggtggaactt
agagaagtagtcaatggatgggcttgaatggaagataatgggatagtctt
agcactagagatgcacaaagaatggtctcaatgagaaaagaaaatgtatt
acagttctccagtcaagaggtaataagatttatgaaattggacatggtgc
aacataactgtaatgatcttgccacttgggagtcagagcaagaggatcat
cagtttgagatattcttagacttcaacagcagcagcaattgttggtgtgg
aacaacagaaacataatagagatgtcatgattattcaggagagttagggg
aagaaatcgagcattaaaatatgattattcaggtagcgggaaaagaaata
tagaagaaagggaaagtgaaggaggaaataattaggttagaactgtggtg
ggtttgttttagggtttccattgcggtgtagacaccataaccaaggaaac
tcttttaaaggataatatttgattggggctggattacaggttcagaggtt
cagtccatcatcatcaaggagagactatgacaatgtccaggcaggcatag
tgaagaaggagttgagggttctacatcttcatccaaatgaagctaggaga
agactttctctcaagtgactaggaggtgagttccaaagcccatcaccaca
gtgacatgtgtccttaataaggccacacctactccaacaaggccacacct
tgtaatagtgacactccctgggccaagcatattcaaatcgccacaaacta
tagaattataatactatattgtcagatgcctgactggtgcattgccagct
aaagtcttattgcagccaaggtagccagtgtaagacttatactagttaga
gtgtcaaaatatggacattgaagctctgtgtctaaatgaactccacagta
tgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_119607755_119608961
seq2: B6Ng01-052N09.b_43_1229

seq1  GAATTCCTACTGTACTGTGAAAGGTATAGGTCACAACTCAAGCTAATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTGTACTGTGAAAGGTATAGGTCACAACTCAAGCTAATTCA  50

seq1  AATAGTTTTTTTTTACTGGATATGAAAAACTTCTTGCAGTTTAAATGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTTTTTTTACTGGATATGAAAAACTTCTTGCAGTTTAAATGCAT  100

seq1  CTCTGTTGACCACATAAGAGTCTTCACTATTGAATAACAATATCAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGACCACATAAGAGTCTTCACTATTGAATAACAATATCAAAGAG  150

seq1  ATTTTTTATTCTTCACATCTACTAGGACTGTTTAAATATCTAAATTCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATTCTTCACATCTACTAGGACTGTTTAAATATCTAAATTCCAG  200

seq1  TCTAAAATCCTATTAATGACCCACATGTATTTCAGTTGGCTTTATGTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAATCCTATTAATGACCCACATGTATTTCAGTTGGCTTTATGTGAG  250

seq1  CTGAGATCACTGGACAGAAGGCCTTTAACAATGTGTTCTGCTAACTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATCACTGGACAGAAGGCCTTTAACAATGTGTTCTGCTAACTAGAT  300

seq1  CCCAAAACTCAAACTGTAAGTTCAAAACAACCTTGTAAAACCTAATAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAACTCAAACTGTAAGTTCAAAACAACCTTGTAAAACCTAATAGAT  350

seq1  GCGATTTATGTGTACTGTCCAGCCCTCAACTTTGTGAAATTCTTTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTTATGTGTACTGTCCAGCCCTCAACTTTGTGAAATTCTTTTTCCA  400

seq1  GTGGCATCATTCATATAAAAGAAATGTGCTTGTTTTCTTTATTTTTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATCATTCATATAAAAGAAATGTGCTTGTTTTCTTTATTTTTCTTC  450

seq1  TCTTTCCCACATTTGTGGTAACTATTCACTCTTATTTATTAATATTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCCACATTTGTGGTAACTATTCACTCTTATTTATTAATATTATAA  500

seq1  AACTGAAAGTATAGTACTCTGAACAATGGTGTGGCTACTGTGGCTGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAGTATAGTACTCTGAACAATGGTGTGGCTACTGTGGCTGGAAA  550

seq1  AACAGAGGGTTCTGCTTAAAAAGAGTTAGCCACCAGAGCAAATAAACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGGGTTCTGCTTAAAAAGAGTTAGCCACCAGAGCAAATAAACTGG  600

seq1  TTTTGAACTACACAAGCTGCCTCTGGGCTACTTCACCCTGTATTGAGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAACTACACAAGCTGCCTCTGGGCTACTTCACCCTGTATTGAGGGG  650

seq1  GAATCATGGGGGGTAGACAGAATTCCTGGACATGAATATCAGCTATTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATGGGGGGTAGACAGAATTCCTGGACATGAATATCAGCTATTGCT  700

seq1  GACAGTTGATTAAGCTTTGCCTACTGAACTCCCTTTCGTTCTGTTTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTTGATTAAGCTTTGCCTACTGAACTCCCTTTCGTTCTGTTTCTGA  750

seq1  GTTAAAACTTCTATAGGTGAGAAACTAATAACCTTATGTAATGTGCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAACTTCTATAGGTGAGAAACTAATAACCTTATGTAATGTGCAAAG  800

seq1  CCAGCCTCTTCCATCTCAGCTGCATTCCCAAACTATTTTGATAGAAGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCTTCCATCTCAGCTGCATTCCCAAACTATTTTGATAGAAGCAA  850

seq1  CAAAAGGCTACAGTTCCTTTTACCTACTTAGCGTCACTTCGTATTTCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGCTACAGTTCCTTTTACCTACTTAGCGTCACTTCGTATTTCAAT  900

seq1  TTTTTTTTCTTTAATTTGAATGGTCATTTTTCTCTGAAACCATGAAGCAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTTAATTTGAATGGTCATTTTTCTCTGAAACCATGAAGCAC  950

seq1  TAAAATCAGGCATAAAATCGAAAGCCATAGAGTAAAACTGCGATAGTTTT  1000
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  TAAAATCA-GCATAAAATCGAAAGCCATAGAGT-AAACTGCGATAGTTTT  998

seq1  GAGCATGTAGCAATTGGTTTTCCACTGTACTCCACCAGAGAGCAGAAGAA  1050
      ||||||||||||||||||||| |||||||||||||||||||||||| || 
seq2  GAGCATGTAGCAATTGGTTTTTCACTGTACTCCACCAGAGAGCAGAGGA-  1047

seq1  CAAGCTAACTATCAATGATGATTCAGGAAATGAATCTGAGACTGCTAAGT  1100
        |||| ||||||| |||||| ||||| |||||   ||||||||||||||
seq2  -CAGCTTACTATCATTGATGA-TCAGG-AATGATCTTGAGACTGCTAAGT  1094

seq1  ACTTCACCGCCTCTGGTTTTGAATCTATTACTTCCTTTACATTGAC-GAC  1149
      |||||  |||| || | |||||| |   ||| |||||||||||||| |||
seq2  ACTTCCACGCC-CTTGGTTTGAACCATATAC-TCCTTTACATTGACAGAC  1142

seq1  TCAGAAAACATTTTAATGCCATTTTCAAACCATTTCCCTCCTAATTATGT  1199
      || ||||     || ||| |||||   |||||||  ||| |||  |||||
seq2  TC-GAAA----CTTTATG-CATTT--CAACCATT--CCT-CTA--TATGT  1179

seq1  ATGTGTCT  1207
      ||||||||
seq2  ATGTGTCT  1187

seq1: chr13_119725511_119726627
seq2: B6Ng01-052N09.g_67_1170 (reverse)

seq1  GGCATTACTGTGGATGTCTCATTTAGACACAAGAGCTTCAATGTTCCATA  50
      |||| ||||||||| || |||||||||||| |||||||||||| ||||||
seq2  GGCA-TACTGTGGA-GT-TCATTTAGACAC-AGAGCTTCAATG-TCCATA  45

seq1  TTTTTGACACTCTGACTAGTTATAAGTCTTACACTGGCTACCTTGGGCTG  100
       |||||||||||| ||||| |||||||||||||||||||||||| |||||
seq2  -TTTTGACACTCTAACTAG-TATAAGTCTTACACTGGCTACCTT-GGCTG  92

seq1  CAATAAGACTCTTAGCTGGCAATGCACCAGTCAGGCATTCTGACAATATT  150
      |||||||||| |||||||||||||||||||||||||| |||||||||| |
seq2  CAATAAGACT-TTAGCTGGCAATGCACCAGTCAGGCA-TCTGACAATA-T  139

seq1  AGTATTTATAATTCTATAGTTTGTGGCGATTTGAATATGCTTGGCCCAGG  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTA-TTATAATTCTATAGTTTGTGGCGATTTGAATATGCTTGGCCCAGG  188

seq1  GAGTGTCACTATTACAAGGTGTGGCCTTGTTGGAGTAGGTGTGGCCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCACTATTACAAGGTGTGGCCTTGTTGGAGTAGGTGTGGCCTTAT  238

seq1  TAAAGGACACATGTCACTGTGGTGATGGGCTTTGGAACTCACCTCCTAGT  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-AAGGACACATGTCACTGTGGTGATGGGCTTTGGAACTCACCTCCTAGT  287

seq1  CACTTGAGAGAAAGTCTTCTCCTAGCTTCATTTGGATGAAGATGTAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGAGAAAGTCTTCTCCTAGCTTCATTTGGATGAAGATGTAGAAC  337

seq1  CCTCAACTCCTTCTTCACTATGCCTGCCTGGACATTGTCATAGTCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACTCCTTCTTCACTATGCCTGCCTGGACATTGTCATAGTCTCTCC  387

seq1  TTGATGATGATGGACTGAACCTCTGAACCTGTAATCCAGCCCCAATCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGATGATGGACTGAACCTCTGAACCTGTAATCCAGCCCCAATCAAA  437

seq1  TATTATCCTTTAAAAGAGTTTCCTTGGTTATGGTGTCTACACCGCAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCCTTTAAAAGAGTTTCCTTGGTTATGGTGTCTACACCGCAATGG  487

seq1  AAACCCTAAAACAAACCCACCACAGTTCTAACCTAATTATTTCCTCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTAAAACAAACCCACCACAGTTCTAACCTAATTATTTCCTCCTTC  537

seq1  ACTTTCCCTTTCTTCTATATTTCTTTTCCCGCTACCTGAATAATCATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCCTTTCTTCTATATTTCTTTTCCCGCTACCTGAATAATCATATT  587

seq1  TTAATGCTCGATTTCTTCCCCTAACTCTCCTGAATAATCATGACATCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTCGATTTCTTCCCCTAACTCTCCTGAATAATCATGACATCTCT  637

seq1  ATTATGTTTCTGTTGTTCCACACCAACAATTGCTGCTGCTGTTGAAGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGTTTCTGTTGTTCCACACCAACAATTGCTGCTGCTGTTGAAGTCT  687

seq1  AAGAATATCTCAAACTGATGATCCTCTTGCTCTGACTCCCAAGTGGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATCTCAAACTGATGATCCTCTTGCTCTGACTCCCAAGTGGCAAG  737

seq1  ATCATTACAGTTATGTTGCACCATGTCCAATTTCATAAATCTTATTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTACAGTTATGTTGCACCATGTCCAATTTCATAAATCTTATTACCT  787

seq1  CTTGACTGGAGAACTGTAATACATTTTCTTTTCTCATTGAGACCATTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTGGAGAACTGTAATACATTTTCTTTTCTCATTGAGACCATTCTT  837

seq1  TGTGCATCTCTAGTGCTAAGACTATCCCATTATCTTCCATTCAAGCCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATCTCTAGTGCTAAGACTATCCCATTATCTTCCATTCAAGCCCAT  887

seq1  CCATTGACTACTTCTCTAAGTTCCACCAAGGAAAAGATGGAAGTCTTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGACTACTTCTCTAAGTTCCACCAAGGAAAAGATGGAAGTCTTTGT  937

seq1  GGCTGGCTAAATATTTACCTATTCTATCCCCAATCAGCTTATCACAATTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGCTAAATATTTACCTATTCTATCCCCAATCAGCTTATCACAATTT  987

seq1  GATACCTTCTACTATCATAGAATTTGTAGTCTTAAGTGACTTTGGAAAGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCTTCTACTATCATAGAATTTGTAGTCTTAAGTGACTTTGGAAAGG  1037

seq1  CAACATGTTGCTTGCATCCTATGGTTTTCTTCTTCCATGTTCACATGACA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTTGCTTGCATCCTATGGTTTTCTTCTTCCATGTTCACATGACA  1087

seq1  TCCTTACTAGAGAATTC  1117
      |||||||||||||||||
seq2  TCCTTACTAGAGAATTC  1104