BAC Information

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BAC

Clone NameB6Ng01-053C01
Chromosome13 (Build37)
Map Location 20,429,863 - 20,537,022
singlet/doubletdoublet
Overlap geneElmo1
Upstream geneTcrg-C, Stard3nl, Epdr1, Sfrp4, Txndc3, A530099J19Rik, Gpr141, LOC432730
Downstream geneLOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053C01.bB6Ng01-053C01.g
ACCDH876266DH876267
length1,158989
definitionDH876266|Mus musculus domesticus DNA, BAC clone: B6Ng01-053C01, 5' end.DH876267|Mus musculus domesticus DNA, BAC clone: B6Ng01-053C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,535,844 - 20,537,022)(20,429,863 - 20,430,848)
sequence
gaattcacatgattgatgtaattcaagaaattcaaaacttcaggtccatg
tcaacagaaacccaattttgatcttgttgacaatgaaagcagctgcaaaa
tgcaatatctaggctctcttttaactaagagaagtcacatgaacaagtcc
tgaccaataacaaaaaaggagccatttcttagtcaactttccaggaaagg
aagagaagagggaggctctactagcttattctcctttgttcttcctttcc
tatttaattcttttatgtctggaatgtaagactacgactgagcttctaca
actcgtttattagcctaaaaatgagggctgtatcctagatgattagaaag
agctcttggtgccactgtgaagacaccatagccaaacttttcctctggaa
ttctgtgcttagatccctgtttttacatttttgaaactatgcttagacat
aattattcatatggaaagttaaggttcaggaagtacttgaatagtaattt
aagaaaacatgcgcaggatgcatgagtacaagtgttctggtcaaacacat
ttgcatgaaaacgtcaaatttgatgtttcctcaaatgatttatatcctta
gatagttaagatcctggagcctattacgtcaactgtgaaggtcaagagca
ttgatttctgtgaagcatatcatgaagaatttggtgcatattctttacta
tttcttattgattgtgttaaaacctgtgggagtattgagatctcaaaggc
gaaatttcactgggctgtgaactcttagttcagatttttcccacctgaaa
atactcctatgatctgcacacagaaacctaaggagtaacggagttaagtg
ccctgcagtgaggggccaggaacagaatccagtgttccttccatgtctgc
agtcagtgtgctcagactctccatgaaaggcccgcctttacactcttgtt
tgtctcgtctgctttgtttgaggcgggtctgcaatgtctcaggtgccctt
tcattcgtggtctcttaactgagcctctgggcacacaatgtggcacatca
tgcaacttcatcgatgaactctttaagactggcctttcacctgagagata
gcgagaaacaaatctgggcagttagttacccatgatactaactactatga
cttctatg
gaattcatagaagttttgtttcattttgttttgctttttcagttgagtgc
cttttctttagtactggggattgtacccagggtctcatggatgctaggca
agagttctgccacttgggtatagtcttagccctctataaatttttatttt
tcagacaggtcctctctaagttgttcaagatggctttgaattgcttctat
agcccagacaaaccttaaacttgatatcatcttgcctctgctaccagagt
agctgagagtacataaacaggcacagcttggtttccttttcatttattgt
tggaatagatgaataagctaatactagaaattggtttgaagtgagtattc
cattgtgctctcttttgtagcactcggtcttgttggctaggccctgccac
ttggtggcccagacttttgtgaagtaaacttttagtccaaatggcagcag
tgtgacagtaaatatgttcagctttcaaactgtgaaagggaaaatgtaga
aacgtaaggtggttgaggtatagtgtccaaaaatgttgccaagtcttggc
caaatccatgctctaaggtcctgtgctggcatgtgaaggcatctagccac
agtttcttatgagccacaggaggacagcagtgacagtggcttaatgggga
tgtggtgaattttaatgctcacaaagtacaagggagcaacagctccttaa
cttagtaaggaacaatccttgtaccatcatctgggctcaggaaaaccaga
ttcatcaaaataacaagtgtgtctgcatggggcaagctttagtctttttt
tttttttcttctaaataattaaacttagcgaaatctccattgggttattt
catgtatttttaattttctattttcagttgggtatgattggaaactctca
cttaagtaaataccaattaagagtaaagtggggttggaaggatggcttca
gtggttgatctcattgtaatgctcattccatagcaagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_20535844_20537022
seq2: B6Ng01-053C01.b_45_1202 (reverse)

seq1  CATAGAAGTCCTATAGTTGTTTATGTATCATGTGGTAAACTAACTTGCCC  50
      ||||||||||  ||||| |||   |||||||| ||| ||||||||   ||
seq2  CATAGAAGTC--ATAGTAGTT--AGTATCATG-GGT-AACTAACT--GCC  42

seq1  CAGATTTGTTCTCTGCCTA-CTCTTCAGTGAAAGGGGCAAGTCTTAAAGA  99
      |||||||||| |||  ||| ||||   ||||||  ||| |||||||||||
seq2  CAGATTTGTT-TCTCGCTATCTCTCAGGTGAAA--GGCCAGTCTTAAAGA  89

seq1  G-TCATACGATGAAGTATGCATGATGGTGCACATTTGTGTGCCCAGGAGG  148
      | |||| ||||||||| |||||||||   |||| ||||||||||| ||||
seq2  GTTCAT-CGATGAAGT-TGCATGATGTGCCACA-TTGTGTGCCCA-GAGG  135

seq1  CTCAGTTAAGAAGACCACGAATGGAAGGGCACCCTGAGGAACATTGCAGG  198
      |||||||||| |||||||||||| ||||||| ||||||  ||||||||| 
seq2  CTCAGTTAAG-AGACCACGAATGAAAGGGCA-CCTGAG--ACATTGCAG-  180

seq1  ACCCCGCCTCAAACAAAGCAGACGAGAACAAAACAAGAGTGTAAAGGCGG  248
        |||||||||||||||||||||||||   ||||||||||||||||||||
seq2  -ACCCGCCTCAAACAAAGCAGACGAGA--CAAACAAGAGTGTAAAGGCGG  227

seq1  GCCTTTCATGGAGAGTCTGAGCACACTGACTGCAGACATGGAAGGAACAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCATGGAGAGTCTGAGCACACTGACTGCAGACATGGAAGGAACAC  277

seq1  TGGATTCTGTTCCTGGCCCCTCACTGCAGGGCACTTAACTCCGTTACTCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTGTTCCTGGCCCCTCACTGCAGGGCACTTAACTCCGTTACTCC  327

seq1  TTAGGTTTCTGTGTGCAGATCATAGGAGTATTTTCAGGTGGGAAAAATCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTCTGTGTGCAGATCATAGGAGTATTTTCAGGTGGGAAAAATCT  377

seq1  GAACTAAGAGTTCACAGCCCAGTGAAATTTCGCCTTTGAGATCTCAATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAGAGTTCACAGCCCAGTGAAATTTCGCCTTTGAGATCTCAATAC  427

seq1  TCCCACAGGTTTTAACACAATCAATAAGAAATAGTAAAGAATATGCACCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGGTTTTAACACAATCAATAAGAAATAGTAAAGAATATGCACCA  477

seq1  AATTCTTCATGATATGCTTCACAGAAATCAATGCTCTTGACCTTCACAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCATGATATGCTTCACAGAAATCAATGCTCTTGACCTTCACAGT  527

seq1  TGACGTAATAGGCTCCAGGATCTTAACTATCTAAGGATATAAATCATTTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTAATAGGCTCCAGGATCTTAACTATCTAAGGATATAAATCATTTG  577

seq1  AGGAAACATCAAATTTGACGTTTTCATGCAAATGTGTTTGACCAGAACAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACATCAAATTTGACGTTTTCATGCAAATGTGTTTGACCAGAACAC  627

seq1  TTGTACTCATGCATCCTGCGCATGTTTTCTTAAATTACTATTCAAGTACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACTCATGCATCCTGCGCATGTTTTCTTAAATTACTATTCAAGTACT  677

seq1  TCCTGAACCTTAACTTTCCATATGAATAATTATGTCTAAGCATAGTTTCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAACCTTAACTTTCCATATGAATAATTATGTCTAAGCATAGTTTCA  727

seq1  AAAATGTAAAAACAGGGATCTAAGCACAGAATTCCAGAGGAAAAGTTTGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAAAAACAGGGATCTAAGCACAGAATTCCAGAGGAAAAGTTTGG  777

seq1  CTATGGTGTCTTCACAGTGGCACCAAGAGCTCTTTCTAATCATCTAGGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTGTCTTCACAGTGGCACCAAGAGCTCTTTCTAATCATCTAGGAT  827

seq1  ACAGCCCTCATTTTTAGGCTAATAAACGAGTTGTAGAAGCTCAGTCGTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCTCATTTTTAGGCTAATAAACGAGTTGTAGAAGCTCAGTCGTAG  877

seq1  TCTTACATTCCAGACATAAAAGAATTAAATAGGAAAGGAAGAACAAAGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATTCCAGACATAAAAGAATTAAATAGGAAAGGAAGAACAAAGGA  927

seq1  GAATAAGCTAGTAGAGCCTCCCTCTTCTCTTCCTTTCCTGGAAAGTTGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGCTAGTAGAGCCTCCCTCTTCTCTTCCTTTCCTGGAAAGTTGAC  977

seq1  TAAGAAATGGCTCCTTTTTTGTTATTGGTCAGGACTTGTTCATGTGACTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATGGCTCCTTTTTTGTTATTGGTCAGGACTTGTTCATGTGACTT  1027

seq1  CTCTTAGTTAAAAGAGAGCCTAGATATTGCATTTTGCAGCTGCTTTCATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGTTAAAAGAGAGCCTAGATATTGCATTTTGCAGCTGCTTTCATT  1077

seq1  GTCAACAAGATCAAAATTGGGTTTCTGTTGACATGGACCTGAAGTTTTGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAAGATCAAAATTGGGTTTCTGTTGACATGGACCTGAAGTTTTGA  1127

seq1  ATTTCTTGAATTACATCAATCATGTGAATTC  1179
      |||||||||||||||||||||||||||||||
seq2  ATTTCTTGAATTACATCAATCATGTGAATTC  1158

seq1: chr13_20429863_20430848
seq2: B6Ng01-053C01.g_69_1057

seq1  GAATTCATAGAAGTTTTGTTTCATTTTGTTTTGCTTTTTCAGTTGAGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGAAGTTTTGTTTCATTTTGTTTTGCTTTTTCAGTTGAGTGC  50

seq1  CTTTTCTTTAGTACTGGGGATTGTACCCAGGGTCTCATGGATGCTAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTAGTACTGGGGATTGTACCCAGGGTCTCATGGATGCTAGGCA  100

seq1  AGAGTTCTGCCACTTGGGTATAGTCTTAGCCCTCTATAAATTTTTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTGCCACTTGGGTATAGTCTTAGCCCTCTATAAATTTTTATTTT  150

seq1  TCAGACAGGTCCTCTCTAAGTTGTTCAAGATGGCTTTGAATTGCTTCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAGGTCCTCTCTAAGTTGTTCAAGATGGCTTTGAATTGCTTCTAT  200

seq1  AGCCCAGACAAACCTTAAACTTGATATCATCTTGCCTCTGCTACCAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGACAAACCTTAAACTTGATATCATCTTGCCTCTGCTACCAGAGT  250

seq1  AGCTGAGAGTACATAAACAGGCACAGCTTGGTTTCCTTTTCATTTATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGAGTACATAAACAGGCACAGCTTGGTTTCCTTTTCATTTATTGT  300

seq1  TGGAATAGATGAATAAGCTAATACTAGAAATTGGTTTGAAGTGAGTATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAGATGAATAAGCTAATACTAGAAATTGGTTTGAAGTGAGTATTC  350

seq1  CATTGTGCTCTCTTTTGTAGCACTCGGTCTTGTTGGCTAGGCCCTGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGCTCTCTTTTGTAGCACTCGGTCTTGTTGGCTAGGCCCTGCCAC  400

seq1  TTGGTGGCCCAGACTTTTGTGAAGTAAACTTTTAGTCCAAATGGCAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGGCCCAGACTTTTGTGAAGTAAACTTTTAGTCCAAATGGCAGCAG  450

seq1  TGTGACAGTAAATATGTTCAGCTTTCAAACTGTGAAAGGGAAAATGTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAGTAAATATGTTCAGCTTTCAAACTGTGAAAGGGAAAATGTAGA  500

seq1  AACGTAAGGTGGTTGAGGTATAGTGTCCAAAAATGTTGCCAAGTCTTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTAAGGTGGTTGAGGTATAGTGTCCAAAAATGTTGCCAAGTCTTGGC  550

seq1  CAAATCCATGCTCTAAGGTCCTGTGCTGGCATGTGAAGGCATCTAGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCATGCTCTAAGGTCCTGTGCTGGCATGTGAAGGCATCTAGCCAC  600

seq1  AGTTTCTTATGAGCCACAGGAGGACAGCAGTGACAGTGGCTTAATGGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTTATGAGCCACAGGAGGACAGCAGTGACAGTGGCTTAATGGGGA  650

seq1  TGTGGTGAATTTTAATGCTCACAAAGTACAAGGGAGCAACAGCTCCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGAATTTTAATGCTCACAAAGTACAAGGGAGCAACAGCTCCTTAA  700

seq1  CTTAGTAAGGAACAATCCTTGTACCATCATCTGGGCTCAGGAAAACCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTAAGGAACAATCCTTGTACCATCATCTGGGCTCAGGAAAACCAGA  750

seq1  TTCATCAAAATAACAAGTGTGTCTGCATGGGGCAAGCTTTAGTC-TTTTT  799
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTCATCAAAATAACAAGTGTGTCTGCATGGGGCAAGCTTTAGTCTTTTTT  800

seq1  TTTTTTTCTTCTAAATAATTAAACTTAGCGAAATCTCCATTGGGTTATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTCTAAATAATTAAACTTAGCGAAATCTCCATTGGGTTATTT  850

seq1  CATGTA-TTTTAATTTTCTATTTTCAGTTGGGTATGATTGGAAACTCTCA  898
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTTTTAATTTTCTATTTTCAGTTGGGTATGATTGGAAACTCTCA  900

seq1  CTTAAGTAAATACCAAATTAAGAGTAAAGTGGGGTTGGAAGGATGGC-TC  947
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  CTTAAGTAAATACC-AATTAAGAGTAAAGTGGGGTTGGAAGGATGGCTTC  949

seq1  AGTGGTTGA-GTCCATGTAATGCTCATTCCATAGCAAGTG  986
      |||||||||  ||  |||||||||||||||||||||||||
seq2  AGTGGTTGATCTCATTGTAATGCTCATTCCATAGCAAGTG  989