BAC Information

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BAC

Clone NameB6Ng01-053I02
Chromosome13 (Build37)
Map Location 114,849,676 - 114,984,965
singlet/doubletdoublet
Overlap geneArl15, A430090L17Rik
Upstream geneCdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074, LOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927
Downstream geneNdufs4, LOC100040958, Fst, 4930467J12Rik, Mocs2, Itga2, LOC100040975, Itga1, Pelo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053I02.bB6Ng01-053I02.g
ACCDH876535DH876536
length672973
definitionDH876535|Mus musculus domesticus DNA, BAC clone: B6Ng01-053I02, 5' end.DH876536|Mus musculus domesticus DNA, BAC clone: B6Ng01-053I02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,984,294 - 114,984,965)(114,849,676 - 114,850,654)
sequence
gaattctttaccatgaatctagttacaaatggaagatttatgaaattggc
caaatttgaagagtgggttgctaagcagtgtgcctatttcactaaacctg
attgttttagttaatatatggaatgctatgcttaggcttgcgcctgatgt
atgtctattgctagggatagctaacagccacccaaactcacagcagccaa
tcaagcccacacgcataaggactgtggaacctgcctgggtcagaaagtct
tagctgttgaaggagagaatgttgggctacttgcatttactttcggcttg
cttcctctgtgttcaggtctcagtttgggaggcaacagagaactgcctat
ggggcaggcttctgtcattgtgtgtgcctatcgcaacactccctgcccgg
agcaccaacttcttaggattctggtgggctgccctggccgcagaagttgg
tccagtgatggacgtccacagcagcacagttcctaagttcttctcttagg
acttcccagcgaaagagttctgaattcttcagctatgcagcttatgactt
ttactcaggactggcaataaatatccacgttttcaggaccagtcttggga
ataaagttaatacagaggaagaaaggaggaagaaaggaagaagagaacga
ggaagaggagggggagggggag
gaattcttggcagtgtcctctgaaccagatacctaccaatcgagcataat
aggaagctttaaaactccggacgttgcatagccagacaaatcagtactga
atgacaatgttcttttaaaaagcataggactatatttaatcagataaact
aaatgatagatgtcatttttatggaaagctaagaactagtaattttggtt
ggtccgagaaggaaaacaagagtgtcaaatctaaaagttaatgacaatac
tggcttctctcggtcgatacaaatggttgaaagcaactctatgttgtgct
tggacaattcaacagtgatgataaatatggagaactacagaaagaacttt
tgtttttgctgctaaatattagtaggaatccaggggtgtgtacacaccac
acacagattattttaaagtatctgtgctttgttttacgaatttgggagat
ttgttcatactacagcatacgtgttgctaagattcactagtgatgctcag
gccgtttttgggactttggaataaccttaaacacaattcattattagtgt
ttgcttgccttatatttcaaggactttctcagtcagtcgcaagaatgaaa
tgacagtgcgaaaatatatactaggggtgcaaaattatttccaattatcg
atagcaacttactaacgcaagctttagttttccacttggggtgaaagaaa
agcagcccctctgaggaattctgaggcgcagttgacaaacctttggggga
aaggtcaaaagcaaggaattaggtagaactgggaaccctcttcagtttct
cttattcacatgataaagtagcatccagatacacccctgtgatttttcac
atctgggaggcatgccaccaccgtagctaaagggacagttcctggctttg
gggcagaaacgattaaaggacagtgtgaagaaaagttgtggctgctgaac
ccttacctgcagctgtgactgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_114984294_114984965
seq2: B6Ng01-053I02.b_42_713 (reverse)

seq1  CTCCCCCTCCCCCTCCTCTTCCTCGTTCTCTTCTTCCTTTCTTCCTCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCCCCCTCCTCTTCCTCGTTCTCTTCTTCCTTTCTTCCTCCTT  50

seq1  TCTTCCTCTGTATTAACTTTATTCCCAAGACTGGTCCTGAAAACGTGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCTGTATTAACTTTATTCCCAAGACTGGTCCTGAAAACGTGGAT  100

seq1  ATTTATTGCCAGTCCTGAGTAAAAGTCATAAGCTGCATAGCTGAAGAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTGCCAGTCCTGAGTAAAAGTCATAAGCTGCATAGCTGAAGAATT  150

seq1  CAGAACTCTTTCGCTGGGAAGTCCTAAGAGAAGAACTTAGGAACTGTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCTTTCGCTGGGAAGTCCTAAGAGAAGAACTTAGGAACTGTGCT  200

seq1  GCTGTGGACGTCCATCACTGGACCAACTTCTGCGGCCAGGGCAGCCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGACGTCCATCACTGGACCAACTTCTGCGGCCAGGGCAGCCCACC  250

seq1  AGAATCCTAAGAAGTTGGTGCTCCGGGCAGGGAGTGTTGCGATAGGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCCTAAGAAGTTGGTGCTCCGGGCAGGGAGTGTTGCGATAGGCACA  300

seq1  CACAATGACAGAAGCCTGCCCCATAGGCAGTTCTCTGTTGCCTCCCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGACAGAAGCCTGCCCCATAGGCAGTTCTCTGTTGCCTCCCAAAC  350

seq1  TGAGACCTGAACACAGAGGAAGCAAGCCGAAAGTAAATGCAAGTAGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTGAACACAGAGGAAGCAAGCCGAAAGTAAATGCAAGTAGCCCA  400

seq1  ACATTCTCTCCTTCAACAGCTAAGACTTTCTGACCCAGGCAGGTTCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCTCCTTCAACAGCTAAGACTTTCTGACCCAGGCAGGTTCCACA  450

seq1  GTCCTTATGCGTGTGGGCTTGATTGGCTGCTGTGAGTTTGGGTGGCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTATGCGTGTGGGCTTGATTGGCTGCTGTGAGTTTGGGTGGCTGTT  500

seq1  AGCTATCCCTAGCAATAGACATACATCAGGCGCAAGCCTAAGCATAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCCCTAGCAATAGACATACATCAGGCGCAAGCCTAAGCATAGCAT  550

seq1  TCCATATATTAACTAAAACAATCAGGTTTAGTGAAATAGGCACACTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATATTAACTAAAACAATCAGGTTTAGTGAAATAGGCACACTGCTT  600

seq1  AGCAACCCACTCTTCAAATTTGGCCAATTTCATAAATCTTCCATTTGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCCACTCTTCAAATTTGGCCAATTTCATAAATCTTCCATTTGTAA  650

seq1  CTAGATTCATGGTAAAGAATTC  672
      ||||||||||||||||||||||
seq2  CTAGATTCATGGTAAAGAATTC  672

seq1: chr13_114849676_114850654
seq2: B6Ng01-053I02.g_70_1042

seq1  GAATTCTTGGCAGTGTCCTCTGAACCAGATACCTACCAATCGAGCATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGCAGTGTCCTCTGAACCAGATACCTACCAATCGAGCATAAT  50

seq1  AGGAAGCTTTAAAACTCCGGACGTTGCATAGCCAGACAAATCAGTACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTTTAAAACTCCGGACGTTGCATAGCCAGACAAATCAGTACTGA  100

seq1  ATGACAATGTTCTTTTAAAAAGCATAGGACTATATTTAATCAGATAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATGTTCTTTTAAAAAGCATAGGACTATATTTAATCAGATAAACT  150

seq1  AAATGATAGATGTCATTTTTATGGAAAGCTAAGAACTAGTAATTTTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAGATGTCATTTTTATGGAAAGCTAAGAACTAGTAATTTTGGTT  200

seq1  GGTCCGAGAAGGAAAACAAGAGTGTCAAATCTAAAAGTTAATGACAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCGAGAAGGAAAACAAGAGTGTCAAATCTAAAAGTTAATGACAATAC  250

seq1  TGGCTTCTCTCGGTCGATACAAATGGTTGAAAGCAACTCTATGTTGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTCTCGGTCGATACAAATGGTTGAAAGCAACTCTATGTTGTGCT  300

seq1  TGGACAATTCAACAGTGATGATAAATATGGAGAACTACAGAAAGAACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAATTCAACAGTGATGATAAATATGGAGAACTACAGAAAGAACTTT  350

seq1  TGTTTTTGCTGCTAAATATTAGTAGGAATCCAGGGGTGTGTACACACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGCTGCTAAATATTAGTAGGAATCCAGGGGTGTGTACACACCAC  400

seq1  ACACAGATTATTTTAAAGTATCTGTGCTTTGTTTTACGAATTTGGGAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGATTATTTTAAAGTATCTGTGCTTTGTTTTACGAATTTGGGAGAT  450

seq1  TTGTTCATACTACAGCATACGTGTTGCTAAGATTCACTAGTGATGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATACTACAGCATACGTGTTGCTAAGATTCACTAGTGATGCTCAG  500

seq1  GCCGTTTTTGGGACTTTGGAATAACCTTAAACACAATTCATTATTAGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTTTTGGGACTTTGGAATAACCTTAAACACAATTCATTATTAGTGT  550

seq1  TTGCTTGCCTTATATTTCAAGGACTTTCTCAGTCAGTCGCAAGAATGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGCCTTATATTTCAAGGACTTTCTCAGTCAGTCGCAAGAATGAAA  600

seq1  TGACAGTGCGAAAATATATACTAGGGGTGCAAAATTATTTCCAATTATCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGCGAAAATATATACTAGGGGTGCAAAATTATTTCCAATTATCG  650

seq1  ATAGCAACTTACTAACGCAAGCTTTAGTTTTCCACTTGGGGTGAAAAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAGCAACTTACTAACGCAAGCTTTAGTTTTCCACTTGGGGTG-AAAGAA  699

seq1  AAGCAGCCCCTCTGAGGAATTCTGAGGCGCAGTTGACAAACCTTTGGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCCCTCTGAGGAATTCTGAGGCGCAGTTGACAAACCTTTGGGGG  749

seq1  AAAGGTCAAAAGCAAGGAATTAGGTAGAACTGGGAACCCTCTTCAGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCAAAAGCAAGGAATTAGGTAGAACTGGGAACCCTCTTCAGTTTC  799

seq1  TCTTATTCACATGATAAAGTAGCAATCAAGATACACCCCTGTGATTTTTC  850
      ||||||||||||||||||||||| ||| ||||||||||||||||||||||
seq2  TCTTATTCACATGATAAAGTAGC-ATCCAGATACACCCCTGTGATTTTTC  848

seq1  ACATCTGGGAGGCATGCCACCACCGTAGCTAAAGGGACAGTCTCTGGCTT  900
      |||||||||||||||||||||||||||||||||||||||||  |||||||
seq2  ACATCTGGGAGGCATGCCACCACCGTAGCTAAAGGGACAGTTCCTGGCTT  898

seq1  TGGGGCAGAAACGAGTAAACAGGACAGTGTGAAGAAAAGTTGTGGCTGCT  950
      |||||||||||||| |||  ||||||||||||||||||||||||||||||
seq2  TGGGGCAGAAACGATTAA--AGGACAGTGTGAAGAAAAGTTGTGGCTGCT  946

seq1  G-ACCCTTAGCCTGCAAGCTGTGAGCTGCC  979
      | ||||||| ||||| |||||||| |||||
seq2  GAACCCTTA-CCTGC-AGCTGTGA-CTGCC  973