BAC Information

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BAC

Clone NameB6Ng01-053N14
Chromosome13 (Build37)
Map Location 27,299,375 - 27,299,626
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1
Downstream genePrl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053N14.bB6Ng01-053N14.g
ACCDH876770DH876771
length1,061992
definitionDH876770|Mus musculus domesticus DNA, BAC clone: B6Ng01-053N14, 5' end.DH876771|Mus musculus domesticus DNA, BAC clone: B6Ng01-053N14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaacttaaaatgattttaggcaagcgtctgtgtcctggagtctc
atgctttcctgactaagccacctggggacaagaacctatggttaaaaagc
atcttctgggtatatgcccaggagtggtattgctggatcttttggtagaa
ctgtccaattttctgaggaaccaccaaactgaataccagagtgattgtac
cagcatgcagtcccaccagcaacggagaagtgtttctctttctccacatc
ctctccaaaatctgctgtcacctgagtttttaatcttagccattctgact
ggtgtaaggtgaaatctccgggttgttttgatgtgcatttccctgatgat
taaggatattgaacatatttttaggtgcttctcagccattcagtattcct
cagttgagaattctttgtttagctctgtaccctgttttttaatagggtta
tttggttttctggaacttcttgagttctttatatatattggatattagcc
ccctatcagatttagggttggtaaagatcctttcccaatctgttggtttc
cttttggtcgtattgacaatgtcctttgccttgcagaagcgttgcaattt
catgagaccccatttgtcaattctcgatcttatagcacaagccattgctg
ttctgttcaggaatctttcccctgtgcccatatcttcaaggctcttcccc
acttttcttctctataagcttcagtgtctctgttcttatgtggagttctt
tgatcaacttagacttgagttttgtgcaaggagataaagatggatcaatt
tgcattcttctacatgctgactgccagttgagctagcaccatttgtgaag
tgctgtcttctttccactggatggttttagttccttttgtcaagatcaag
ttgaccagagttgtgtgggtaataaggacacatgctctcactatgtcatt
agcagtcttatttattaatacccagatgctggaaaagaaaccagatgacc
tttacagaggaatagtatacaaaaattgtggtaatttacacatggagtac
tatccgctatt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactggaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
tggaggagctagaagaagtacccaaggagctaaagggatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27299375_27299626
seq2: B6Ng01-053N14.g_755_1006

seq1  CTTAGATTTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACGGAGTT  50
      ||||||  ||||||||||||||||||||||||||||||||| ||  ||| 
seq2  CTTAGAAGTGGGAACAAAACACCCATGGAAGGAGTTACAGAAACAAAGTA  50

seq1  TGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATAGCCAGGGA  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGA  100

seq1  TCCACCCCATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCA  150
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  TCCACCCCATAATCAGCTTCCAAATGCTGACACCATTGCATACACTAGCA  150

seq1  AGATTTTATTGAAAGGACGCAGATGTAGCTGTCTCTTGTGAGACTATGCC  200
      |||||||| || |||||| |||||||||||||||||||||||||||||||
seq2  AGATTTTACTGGAAGGACCCAGATGTAGCTGTCTCTTGTGAGACTATGCC  200

seq1  GGGGCCCAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGA  250
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGA  250

seq1  TC  252
      ||
seq2  TC  252