BAC Information

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BAC

Clone NameB6Ng01-054L07
Chromosome9 (Build37)13 (Build37)
Map Location 61,800,478 - 61,800,8086,736,475 - 6,737,601
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneA430102L10, LOC100040481, Tle3, LOC100039851, Rplp1, Kif23
Downstream genePaqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054L07.bB6Ng01-054L07.g
ACCDH877379DH877380
length9561,116
definitionDH877379|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L07, 5' end.DH877380|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,800,478 - 61,800,808)(6,736,475 - 6,737,601)
sequence
gaattctacaaagtctctgggagcaaccctagctgagacctctaccaatg
ggggatatggagcctaaagaaacatctcctgtagtcaaacttgacttcca
atggaagcaggggacacgaacacacccacaaaacaataggcccaaaattt
gtcctgcctacaagaggttcagggataaagatccagggaatggccaacca
atgactcgtccaacttgagacccacaccatgggagagagtcaacccctgt
cactactaatgatactctgttttgatttcagacaggatcctagcacagct
gtcatctgagagacttcatccagcaatagatagagacagatacagagaca
cacagccaaacatcaggtggagctcagagagtcttactgaagactgaggt
ggggagcagatcgagggatctggagggatcaaggataccataataagacc
tacagaataggctgggcctggtggcacacgcctttaatcccagcactcgg
gaggcagaggcaggcagatttctgagttcgaagccagcctggtctacagc
gtgagttccaggactgccagggctgtacagagaaaccctgtctcgaaaaa
aaaacaaaaaaaaaaaaaacaaaaccctacagaataaactaatctgagcc
tacgggggctcacagagcctgaactcccaaagagcatgcctggactggag
ctaagccccctacacagatgcatcagaggtgcagtttgttcttcatgtgg
gtcccctcccaattggagtgggtgctgtctctggctctgttgcctgcctt
tagatccctttaccctagctgggctgcccattcatgcctcagtgggagag
gatgcacataatcctactgtgacttgatgtaccagagtggattttaccag
agtggattagtatccatggaaggcctcccgtctctgaggaaaagagatga
gggaat
gaattcccaagctgtgctttgtgtgaagggttaataacaaaaatgcaaat
gttgaattatagatgagttggcttttcccagcctgggggattactagagg
ctgatgtacaacagaaacccagatgctgttggacaaaccgcagttcattg
tgccgtaagtgagctatacagatgtgaccttttgtctttggtgcaaaggc
ctcagaactatcatttcagttcagaatactttttagccagtggccattgg
cttatcactacacatgctttgcaaggctgtaggagggagaatgatagaat
atcagagctttcttctttgttgcatgaaaatttatgcatcgaagcacaca
tagttgttctcattatagaagaattgggtgacctaagacctttctagcac
aacccattacctttctccagccaggctaaggcaaatacttattcttctac
gactcaacttattcaccttcctacccttgactgaaccaacttctctaagc
acagcaagctttctgcctttgtagtaagatagaggcagatgggtcaggga
ctcatgtgactaattgatagacatttacagttctcaataattggcagaca
ccaggaagatgtacctggatgtttgcagagtacataacacaaatttgctc
gacttcacgaaactccctgattcttattttgaatcctgttcttgcagatg
agaagtacaaggaaggctgagtgtaatattttgtatcacacggaacttaa
ataagttgtgtcatttatttacctggggattgctgataggccagcctcga
caaattagaccttgtttaagaaaaacaaaagaagataacaaacaaacaaa
actatgtgtaccctggtgagatggctctgtgggtacagtgtttactgctc
aagactgctcaagtctggacatcattctcagagcccacataaggttcagg
agaaaccaattgagaaagttgcatcgtgaccaccatgtgtacatcatagt
gtacacacacccctttacatcaggccctccagaacgataataagtgaaac
attgtaaaccaggtgccctagctactgaagattacagccaatgttaaatc
ttggcctctcatgaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_61800478_61800808
seq2: B6Ng01-054L07.b_506_1003 (reverse)

seq1  ATTCCCTCATCTCTTTTCCAGAGTGTC---AGCCCTGC-------ACCTA  40
      |||||||||||||||||||  || | |   || ||| |       ||  |
seq2  ATTCCCTCATCTCTTTTCCTCAGAGACGGGAGGCCTTCCATGGATACTAA  50

seq1  TTGTTTTTGGTA----------TTGTTTTTCCAGT-------GG------  67
      |    | |||||          | ||   || |||       ||      
seq2  TCCACTCTGGTAAAATCCACTCTGGTACATCAAGTCACAGTAGGATTATG  100

seq1  -------TCT----------------TGGGGAACCC--CT---GTAAAAG  89
             |||                |||| | |||  ||   ||||| |
seq2  TGCATCCTCTCCCACTGAGGCATGAATGGGCAGCCCAGCTAGGGTAAAGG  150

seq1  GGTCATTTGACCTGCAACAG-GGTTGTG-----ACCCA--CCAGTT--GA  129
      | ||    | |  ||||||| |   | |     |||||  ||| ||  ||
seq2  GATCTAAAGGCAGGCAACAGAGCCAGAGACAGCACCCACTCCAATTGGGA  200

seq1  GGG---CCAC-TGAA-----------------------------------  140
      |||   |||| ||||                                   
seq2  GGGGACCCACATGAAGAACAAACTGCACCTCTGATGCATCTGTGTAGGGG  250

seq1  ------------------------CTT---GAGT----------------  147
                              |||   ||||                
seq2  GCTTAGCTCCAGTCCAGGCATGCTCTTTGGGAGTTCAGGCTCTGTGAGCC  300

seq1  ------------GATCACTGGTTTTTGTTTGGTTT--TTTTTTTTTTTTT  183
                  ||| | |   || |||  |||||  |||||||||||||
seq2  CCCGTAGGCTCAGATTAGTTTATTCTGTAGGGTTTTGTTTTTTTTTTTTT  350

seq1  TTTTTGGTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGA  233
      | |||  |||||||||||||||||||||||| ||||||||| ||||||||
seq2  TGTTTTTTTTTCGAGACAGGGTTTCTCTGTACAGCCCTGGCAGTCCTGGA  400

seq1  ACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCGGCCTGCCTC  283
      ||||||  |||||||||||||||| ||||||||||||||| |||||||||
seq2  ACTCACGCTGTAGACCAGGCTGGCTTCGAACTCAGAAATCTGCCTGCCTC  450

seq1  TGCCTCCCGAGTGCTGGGATTAAAGGCATGCACCACCACGCCCAGCCT  331
      ||||||||||||||||||||||||||| ||  |||||| |||||||||
seq2  TGCCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCAGGCCCAGCCT  498

seq1: chr13_6736475_6737601
seq2: B6Ng01-054L07.g_65_1180

seq1  GAATTCCCAAGCTGTGCTTTGTGTGAAGGGTTAATAACAAAAATGCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGCTGTGCTTTGTGTGAAGGGTTAATAACAAAAATGCAAAT  50

seq1  GTTGAATTATAGATGAGTTGGCTTTTCCCAGCCTGGGGGATTACTAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTATAGATGAGTTGGCTTTTCCCAGCCTGGGGGATTACTAGAGG  100

seq1  CTGATGTACAACAGAAACCCAGATGCTGTTGGACAAACCGCAGTTCATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTACAACAGAAACCCAGATGCTGTTGGACAAACCGCAGTTCATTG  150

seq1  TGCCGTAAGTGAGCTATACAGATGTGACCTTTTGTCTTTGGTGCAAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTAAGTGAGCTATACAGATGTGACCTTTTGTCTTTGGTGCAAAGGC  200

seq1  CTCAGAACTATCATTTCAGTTCAGAATACTTTTTAGCCAGTGGCCATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACTATCATTTCAGTTCAGAATACTTTTTAGCCAGTGGCCATTGG  250

seq1  CTTATCACTACACATGCTTTGCAAGGCTGTAGGAGGGAGAATGATAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCACTACACATGCTTTGCAAGGCTGTAGGAGGGAGAATGATAGAAT  300

seq1  ATCAGAGCTTTCTTCTTTGTTGCATGAAAATTTATGCATCGAAGCACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGCTTTCTTCTTTGTTGCATGAAAATTTATGCATCGAAGCACACA  350

seq1  TAGTTGTTCTCATTATAGAAGAATTGGGTGACCTAAGACCTTTCTAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGTTCTCATTATAGAAGAATTGGGTGACCTAAGACCTTTCTAGCAC  400

seq1  AACCCATTACCTTTCTCCAGCCAGGCTAAGGCAAATACTTATTCTTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATTACCTTTCTCCAGCCAGGCTAAGGCAAATACTTATTCTTCTAC  450

seq1  GACTCAACTTATTCACCTTCCTACCCTTGACTGAACCAACTTCTCTAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAACTTATTCACCTTCCTACCCTTGACTGAACCAACTTCTCTAAGC  500

seq1  ACAGCAAGCTTTCTGCCTTTGTAGTAAGATAGAGGCAGATGGGTCAGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGCTTTCTGCCTTTGTAGTAAGATAGAGGCAGATGGGTCAGGGA  550

seq1  CTCATGTGACTAATTGATAGACATTTACAGTTCTCAATAATTGGCAGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTGACTAATTGATAGACATTTACAGTTCTCAATAATTGGCAGACA  600

seq1  CCAGGAAGATGTACCTGGATGTTTGCAGAGTACATAACACAAATTTGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGATGTACCTGGATGTTTGCAGAGTACATAACACAAATTTGCTC  650

seq1  GACTTCACGAAACTCCCTGATTCTTATTTTGAATCCTGTTCTTGCAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCACGAAACTCCCTGATTCTTATTTTGAATCCTGTTCTTGCAGATG  700

seq1  AGAAGTACAAGGAAGGCTGAGTGTAATATTTTGTATCACACGGAACTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTACAAGGAAGGCTGAGTGTAATATTTTGTATCACACGGAACTTAA  750

seq1  ATAAGTTGTGTCATTTATTTACCTGGGGATTGCTGATAGGCCAGCCTCGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTGTGTCATTTATTTACCTGGGGATTGCTGATAGGCCAGCCTCGA  800

seq1  CAAATTAGACCTTGTTTAAGAAAAACAAAAAGAAGATAACAAACAAACAA  850
      |||||||||||||||||||||||||| ||||||||||||||||||||| |
seq2  CAAATTAGACCTTGTTTAAGAAAAAC-AAAAGAAGATAACAAACAAAC-A  848

seq1  AAACTATGTGTACCCTGGTGAGATGGCTCTGTGGGTAACAGTGTTTACTG  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAACTATGTGTACCCTGGTGAGATGGCTCTGTGGGT-ACAGTGTTTACTG  897

seq1  CTCAAGACTGCTCAAGTCTGGACATCAATTCTCAGAGCCCACATAAAGGT  950
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  CTCAAGACTGCTCAAGTCTGGACATC-ATTCTCAGAGCCCACAT-AAGGT  945

seq1  TCAAGGAGAAAACCAATTGAGAAAGTTGCATCGTGACCACCATGTGTACA  1000
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TC-AGGAG-AAACCAATTGAGAAAGTTGCATCGTGACCACCATGTGTACA  993

seq1  TCATAGTGTACACACACCCC-TTACATCA-GCCCTCCAGAAACGATAAAT  1048
      |||||||||||||||||||| |||||||| ||||||||| ||||||||  
seq2  TCATAGTGTACACACACCCCTTTACATCAGGCCCTCCAG-AACGATAA--  1040

seq1  AAAGTGAAACATTGTAAAAACAAGGTG-CCTAGCTACTGAAGAATGACAG  1097
       ||||||||||||||  |||| ||||| |||||||||||||| || ||||
seq2  TAAGTGAAACATTGT--AAACCAGGTGCCCTAGCTACTGAAG-ATTACAG  1087

seq1  CCAATGTTAAACTCTGGCCTCTACATGCAC  1127
      |||||||||||   |||||||| |||| ||
seq2  CCAATGTTAAATCTTGGCCTCT-CATGAAC  1116