BAC Information

Click to search

BAC

Clone NameB6Ng01-054M20
Chromosome13 (Build37)
Map Location 95,626,215 - 95,734,037
singlet/doubletdoublet
Overlap geneOtp
Upstream geneArsb, Cycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1, Tbca
Downstream geneWdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2, Sv2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054M20.bB6Ng01-054M20.g
ACCDH877446DH877447
length984923
definitionDH877446|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M20, 5' end.DH877447|Mus musculus domesticus DNA, BAC clone: B6Ng01-054M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,626,215 - 95,627,276)(95,733,496 - 95,734,037)
sequence
gaattcctccaggtcctgacttttactcactctctggtttctaattagcg
gtgctgatttttctaaggattgcatattgagtcagcaaatatgtcttgca
ccccttgcggccagcgttagatggtatgcatcaccaaaatgtgaagaaag
aatagaaaattgagagcctcatgtctggcctaaaagtcagatgaagggga
gcctgggaggaggctcagggcgagggaggagagtacctggtgctgtccca
gagaactcaagtctggttcccacacccacatcgggttcggttccttacaa
ctgcctgcaagtccagctctagggactctgatgcctcctgactaagggca
tgcacgcacatgcacatacaatcatacacacacagggcatgcactgtaca
cacacaaataaaaacaagaacaacgctttttttctaaaaataagtgggga
gaagctttacaaaatgctacttagaatgttcagtgccgtctgtttgttac
agtgaccactctcttctgctaattggagaacattcggcttcccgtgaagt
atgaagagaaagctttctctgctttcttttaatgatggacttaatgaaac
tcacagactggctggcagaaacaaaataaagtcacatctggaaacatctg
tgccagcaattaaatggcatttaatatgacggattccaaaagggtgatgt
gtttcttcctctgacattaagaatgcaaaactccaggcttccaagctatt
ctgccacaatagttttgagtcatcgggtgtttagaaatcattccggtatt
tacaaagaacccccccccacacacacacacacacacacacccacacacac
acacaccccacacacacacacacacacacaccccacacacacacacaccc
cccccacacacacacacacacccacacacccacacacacacacaccccca
cacccccccccccacaaaacacacaccacaaacc
gaattccttttctctcaggggtcccaaacattgtacttctaagttattac
cagagaaaaagaagacttaagtccacagagaaataaaacataggtatgga
tattaagagcagcactaccggaggatccagcaatacctctcctgggcata
tatccagaagatgccccaactggtaagaaagacacatgctccactatctt
catagcagccttatttataatggccagaagctggaaagaacccagatgcc
cctcaacagaggaatggatacagaaaatgtggtacatctacacaatagat
tagaaagcatttctaagagggaaactcatagctctgagtgcctccaaaaa
gaaactagagagagcacacactagcagcttgacaacacacctaaaagctc
tagaaaaaaaaggaagcaaattcacccaagaggagtacggcaggaaataa
tcaaactcaggggcgaaatcaacctagttgaaacaagaagaactattcaa
ataattagccaaaggaggagctggttctttgagaaaatcaacaagataga
taaacccttagccagactcactagagggcacagggacagcatcctaatta
acaaaatcagaaatgaaaagggagacataacaacagatcctgaagaaatc
caaaacaccatcagatccttctacaaaaggctatactcaaaagaactgga
aaacctgaatgaaatggacaaatttctagacagataacaggtaccaaagt
taaatcagtatcaagttaatgatctaaacagtcccatatcccctaaagaa
atagaagcagtcttaatagtctcccaaccaaaaaaagcccaggaccagat
gggtttagtccagagttctatcagaccttcaaagaagatctaattccagt
tctgcacaaactattccacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_95626215_95627276
seq2: B6Ng01-054M20.b_43_1022

seq1  GAATTCCTCCAGGTCCTGACTTTTACTCACTCTCTGGTTTCTAATTAGCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCAGGTCCTGACTTTTACTCACTCTCTGGTTTCTAATTAGCG  50

seq1  GTGCTGATTTTTCTAAGGATTGCATATTGAGTCAGCAAATATGTCTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGATTTTTCTAAGGATTGCATATTGAGTCAGCAAATATGTCTTGCA  100

seq1  CCCCTTGCGGCCAGCGTTAGATGGTATGCATCACCAAAATGTGAAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGCGGCCAGCGTTAGATGGTATGCATCACCAAAATGTGAAGAAAG  150

seq1  AATAGAAAATTGAGAGCCTCATGTCTGGCCTAAAAGTCAGATGAAGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAATTGAGAGCCTCATGTCTGGCCTAAAAGTCAGATGAAGGGGA  200

seq1  GCCTGGGAGGAGGCTCAGGGCGAGGGAGGAGAGTACCTGGTGCTGTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGAGGAGGCTCAGGGCGAGGGAGGAGAGTACCTGGTGCTGTCCCA  250

seq1  GAGAACTCAAGTCTGGTTCCCACACCCACATCGGGTTCGGTTCCTTACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCAAGTCTGGTTCCCACACCCACATCGGGTTCGGTTCCTTACAA  300

seq1  CTGCCTGCAAGTCCAGCTCTAGGGACTCTGATGCCTCCTGACTAAGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCAAGTCCAGCTCTAGGGACTCTGATGCCTCCTGACTAAGGGCA  350

seq1  TGCACGCACATGCACATACAATCATACACACACAGGGCATGCACTGTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGCACATGCACATACAATCATACACACACAGGGCATGCACTGTACA  400

seq1  CACACAAATAAAAACAAGAACAACGCTTTTTTTCTAAAAATAAGTGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAATAAAAACAAGAACAACGCTTTTTTTCTAAAAATAAGTGGGGA  450

seq1  GAAGCTTTACAAAATGCTACTTAGAATGTTCAGTGCCGTCTGTTTGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTACAAAATGCTACTTAGAATGTTCAGTGCCGTCTGTTTGTTAC  500

seq1  AGTGACCACTCTCTTCTGCTAATTGGAGAACATTCGGCTTCCCGTGAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCACTCTCTTCTGCTAATTGGAGAACATTCGGCTTCCCGTGAAGT  550

seq1  ATGAAGAGAAAGCTTTCTCTGCTTTCTTTTAATGATGGACTTAATGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGAAAGCTTTCTCTGCTTTCTTTTAATGATGGACTTAATGAAAC  600

seq1  TCACAGACTGGCTGGCAGAAACAAAATAAAGTCACATCTGGAAACATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGACTGGCTGGCAGAAACAAAATAAAGTCACATCTGGAAACATCTG  650

seq1  TGCCAGCAATTAAATGGCATTTAATATGACGGATTCCAAAAGGGTGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCAATTAAATGGCATTTAATATGACGGATTCCAAAAGGGTGATGT  700

seq1  GTTTCTTCCTCTGACATTAAGAATGCAAAACTCCAGGCTTCCAAGCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTCCTCTGACATTAAGAATGCAAAACTCCAGGCTTCCAAGCTATT  750

seq1  CTGCCACAATAGTTTTGAGTCATCGGGTGTTTAGAAATCATTCCGGTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACAATAGTTTTGAGTCATCGGGTGTTTAGAAATCATTCCGGTATT  800

seq1  TACAAAGAACCCCCCCCCACACACACACACACACACACACCCACACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGAACCCCCCCCCACACACACACACACACACACACCCACACACAC  850

seq1  ACACACCCCACACACACACACACACACACACCCCACACACACACACACCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCCCACACACACACACACACACACACCCCACACACACACACACCC  900

seq1  CCCCCACACACACACCCACACACCCACACACACCCACACACACACACACA  950
      ||||||||||||||  ||||||||  ||||||||||||||||||||||| 
seq2  CCCCCACACACACA--CACACACC--CACACACCCACACACACACACACC  946

seq1  CACACACACACTCACACACACACACACACACACACACTCACACACACACA  1000
      | ||||| | | | | |||| | |||||||| ||||              
seq2  CCCACACCCCCCCCCCCACA-AAACACACAC-CACA--------------  980

seq1  CACACATACACCCACACACACACACACACACACACACACACCCACACCCA  1050
                                                        
seq2  --------------------------------------------------  980

seq1  CACACACACACA  1062
                  
seq2  ------------  980

seq1: chr13_95733496_95734037
seq2: B6Ng01-054M20.g_69_610 (reverse)

seq1  GTTGATTTTCTCAAAGAACCAGCTCCTCCTTTGGCTAATTATTTGAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTTCTCAAAGAACCAGCTCCTCCTTTGGCTAATTATTTGAATAG  50

seq1  TTCTTCTTGTTTCAACTAGGTTGATTTCGCCCCTGAGTTTGATTATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTGTTTCAACTAGGTTGATTTCGCCCCTGAGTTTGATTATTTCC  100

seq1  TGCCGTACTCCTCTTGGGTGAATTTGCTTCCTTTTTTTTCTAGAGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGTACTCCTCTTGGGTGAATTTGCTTCCTTTTTTTTCTAGAGCTTTT  150

seq1  AGGTGTGTTGTCAAGCTGCTAGTGTGTGCTCTCTCTAGTTTCTTTTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTTGTCAAGCTGCTAGTGTGTGCTCTCTCTAGTTTCTTTTTGGA  200

seq1  GGCACTCAGAGCTATGAGTTTCCCTCTTAGAAATGCTTTCTAATCTATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTCAGAGCTATGAGTTTCCCTCTTAGAAATGCTTTCTAATCTATTG  250

seq1  TGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAGGGGCATCTG  300

seq1  GGTTCTTTCCAGCTTCTGGCCATTATAAATAAGGCTGCTATGAAGATAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTTCCAGCTTCTGGCCATTATAAATAAGGCTGCTATGAAGATAGT  350

seq1  GGAGCATGTGTCTTTCTTACCAGTTGGGGCATCTTCTGGATATATGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATGTGTCTTTCTTACCAGTTGGGGCATCTTCTGGATATATGCCCA  400

seq1  GGAGAGGTATTGCTGGATCCTCCGGTAGTGCTGCTCTTAATATCCATACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTATTGCTGGATCCTCCGGTAGTGCTGCTCTTAATATCCATACC  450

seq1  TATGTTTTATTTCTCTGTGGACTTAAGTCTTCTTTTTCTCTGGTAATAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTATTTCTCTGTGGACTTAAGTCTTCTTTTTCTCTGGTAATAAC  500

seq1  TTAGAAGTACAATGTTTGGGACCCCTGAGAGAAAAGGAATTC  542
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGTACAATGTTTGGGACCCCTGAGAGAAAAGGAATTC  542