BAC Information

Click to search

BAC

Clone NameB6Ng01-055M21
Chromosome13 (Build37)
Map Location 73,360,581 - 73,532,817
singlet/doubletdoublet
Overlap geneLOC621486, Irx4, LOC100042864, Ndufs6, Mrpl36
Upstream geneLOC100042828, LOC100042832, LOC100042836, Irx2
Downstream geneAytl2, Slc6a3, Clptm1l, Tert, Slc6a18, Slc6a19, Slc12a7, Nkd2, EG666360, Trip13, Brd9, Zdhhc11, LOC100042909, 2900041A09Rik, LOC621824, Cep72, Slc9a3, Exoc3, Ahrr, Pdcd6, Sdha, Ccdc127, AI595366, Zfp72, LOC666670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055M21.bB6Ng01-055M21.g
ACCDH878151DH878152
length9901,142
definitionDH878151|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M21, 5' end.DH878152|Mus musculus domesticus DNA, BAC clone: B6Ng01-055M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,532,211 - 73,532,817)(73,360,581 - 73,361,746)
sequence
gaattctccatgatttggagcacacatctatctctgtgctaaccccagca
tgaattaccatggcttcagcctccaaaccactcagtttaaacaccccagc
tgctgtgatttctgggtgcattgctttgccacctagatttcagggccagt
atgccagtttctgcagagtgattgaaatgtcattaaatctatagaggaat
ttggaggaaaaaatcaacatcttaacgtctttgcatttccaatccacgag
tgcggtacacagcttcgtccgataggtctttaatatccctcagcagtgct
tgttattttaagtgtgtggactttgtacatgtgccatatgtctcgatgtt
attggtattgttttaatttcagtttccaattatttcattgcttgcaaaga
gaaatatcaatctaacaaagcacctaagctttgtagatttgttaatttaa
aaaaaaatttaaagactgctttagactttatgttaataaattacacaaaa
ataatggcagttttgctcactttccaacttcacagcatttacatatagat
ttatttagatttgtattttgccctgaacaggccctgtacaacaagttcta
atggaagttgaaaaaacaaacaactttgttttgttctgacctgaagaaag
gagtccagtattttttcaccatgtattctgattccggctgctgtcctgtc
tattcctagttttctgacatttcaaacacgagctgtaactggattctacc
actgttcatctgttgtgatgactatgagttttgtccacataaaggatatt
tggtttatattcccagaatttcatagtgaaaatattcaagcacaggaaaa
ataaaagaaggcagtgtatggtgataagtcaaggtcacgtttagaaccca
gtctgtcctgtgcacatcaatccttttactcagagtgagctgacattgcc
ccaccccatctttcgcttaagaatatgtatcaccagcacg
gaattcagtaggtaaatggataaactgtaatacacccagacaatggaata
gtggtcagtgctaagaggacatgacctagccagacattgtggtgcacacc
tttgattctggtgctctggaggctgaggcaagtggatctatgtgagtgtt
cgaagccaacctggtctacataataagttccagaacacccaggaatactt
agcaaaacggtctctaaaaagtagaacaacaataaagggacgacgtgagc
tgtcaagccatgaaaagaaacaagggccttacgtacccattgccaagtaa
aagaagccagtgtaaaccctttgctcaatctgatttttttttaacctcta
aatgaatattatgtgtaataatagtgagcactgggcaacagcaagcatgc
tgaactgtcgggagtcacactgaggtctgcatctaatttaatatatgtca
aaatcatgatagaggtgctgaagagactgtgtaatcatgaggacacaagt
atgactccctagcacccatgaaactgctgggctactcgcctgtaatccca
gtgctgggaaggtctagagtgagaaaccctggaatgagcttccagggaga
tgctcttatcaacagcctctgagttaaatggagagactgactctgcatct
gtgcataatgtggacggacaacgccgccaataatagtcctctgcacacaa
agtacacacacacacacatacactcaatcacacaacagcatgcacacatc
ataaaaagaagtctggggtgcagctaaagactccacagtccaatcttcaa
acactgaaagatacatactgaaaaggtcacaggcaagaatagaaggttag
tagtaggctcaagtatagcgcatgttgataacaaaattaactccctcgat
ttacatatatttaaattttgcataaatgatggaaatggcagtatgaaatg
attgaaatgcagggaagatatggatctaattcattctttacatgtggata
tccagtttccctacaccactggctgagatgttttattttctctgttatct
tctggcatcttagtacaatcgaatgctgtagttataggtacttctttgat
cttgattttattacctggttaaatgttcatttgtgcagtcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_73532211_73532817
seq2: B6Ng01-055M21.b_48_654 (reverse)

seq1  CTTCCATTAGAACTTGTTGTACAGGGCCTGTTCAGGGCAAAATACAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATTAGAACTTGTTGTACAGGGCCTGTTCAGGGCAAAATACAAATC  50

seq1  TAAATAAATCTATATGTAAATGCTGTGAAGTTGGAAAGTGAGCAAAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATCTATATGTAAATGCTGTGAAGTTGGAAAGTGAGCAAAACTG  100

seq1  CCATTATTTTTGTGTAATTTATTAACATAAAGTCTAAAGCAGTCTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTATTTTTGTGTAATTTATTAACATAAAGTCTAAAGCAGTCTTTAAA  150

seq1  TTTTTTTTTAAATTAACAAATCTACAAAGCTTAGGTGCTTTGTTAGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAAATTAACAAATCTACAAAGCTTAGGTGCTTTGTTAGATTG  200

seq1  ATATTTCTCTTTGCAAGCAATGAAATAATTGGAAACTGAAATTAAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTCTTTGCAAGCAATGAAATAATTGGAAACTGAAATTAAAACAA  250

seq1  TACCAATAACATCGAGACATATGGCACATGTACAAAGTCCACACACTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATAACATCGAGACATATGGCACATGTACAAAGTCCACACACTTAA  300

seq1  AATAACAAGCACTGCTGAGGGATATTAAAGACCTATCGGACGAAGCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACAAGCACTGCTGAGGGATATTAAAGACCTATCGGACGAAGCTGTG  350

seq1  TACCGCACTCGTGGATTGGAAATGCAAAGACGTTAAGATGTTGATTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGCACTCGTGGATTGGAAATGCAAAGACGTTAAGATGTTGATTTTTT  400

seq1  CCTCCAAATTCCTCTATAGATTTAATGACATTTCAATCACTCTGCAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAATTCCTCTATAGATTTAATGACATTTCAATCACTCTGCAGAAA  450

seq1  CTGGCATACTGGCCCTGAAATCTAGGTGGCAAAGCAATGCACCCAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATACTGGCCCTGAAATCTAGGTGGCAAAGCAATGCACCCAGAAAT  500

seq1  CACAGCAGCTGGGGTGTTTAAACTGAGTGGTTTGGAGGCTGAAGCCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGCTGGGGTGTTTAAACTGAGTGGTTTGGAGGCTGAAGCCATGG  550

seq1  TAATTCATGCTGGGGTTAGCACAGAGATAGATGTGTGCTCCAAATCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCATGCTGGGGTTAGCACAGAGATAGATGTGTGCTCCAAATCATGG  600

seq1  AGAATTC  607
      |||||||
seq2  AGAATTC  607

seq1: chr13_73360581_73361746
seq2: B6Ng01-055M21.g_70_1211

seq1  GAATTCAGTAGGTAAATGGATAAACTGTAATACACCCAGACAATGGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGGTAAATGGATAAACTGTAATACACCCAGACAATGGAATA  50

seq1  GTGGTCAGTGCTAAGAGGACATGACCTAGCCAGACATTGTGGTGCACACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAGTGCTAAGAGGACATGACCTAGCCAGACATTGTGGTGCACACC  100

seq1  TTTGATTCTGGTGCTCTGGAGGCTGAGGCAAGTGGATCTATGTGAGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCTGGTGCTCTGGAGGCTGAGGCAAGTGGATCTATGTGAGTGTT  150

seq1  CGAAGCCAACCTGGTCTACATAATAAGTTCCAGAACACCCAGGAATACTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGCCAACCTGGTCTACATAATAAGTTCCAGAACACCCAGGAATACTT  200

seq1  AGCAAAACGGTCTCTAAAAAGTAGAACAACAATAAAGGGACGACGTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACGGTCTCTAAAAAGTAGAACAACAATAAAGGGACGACGTGAGC  250

seq1  TGTCAAGCCATGAAAAGAAACAAGGGCCTTACGTACCCATTGCCAAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGCCATGAAAAGAAACAAGGGCCTTACGTACCCATTGCCAAGTAA  300

seq1  AAGAAGCCAGTGTAAACCCTTTGCTCAATCTGATTTTTTTTTAACCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCCAGTGTAAACCCTTTGCTCAATCTGATTTTTTTTTAACCTCTA  350

seq1  AATGAATATTATGTGTAATAATAGTGAGCACTGGGCAACAGCAAGCATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAATATTATGTGTAATAATAGTGAGCACTGGGCAACAGCAAGCATGC  400

seq1  TGAACTGTCGGGAGTCACACTGAGGTCTGCATCTAATTTAATATATGTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGTCGGGAGTCACACTGAGGTCTGCATCTAATTTAATATATGTCA  450

seq1  AAATCATGATAGAGGTGCTGAAGAGACTGTGTAATCATGAGGACACAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATGATAGAGGTGCTGAAGAGACTGTGTAATCATGAGGACACAAGT  500

seq1  ATGACTCCCTAGCACCCATGAAACTGCTGGGCTACTCGCCTGTAATCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCCCTAGCACCCATGAAACTGCTGGGCTACTCGCCTGTAATCCCA  550

seq1  GTGCTGGGAAGGTCTAGAGTGAGAAACCCTGGAATGAGCTTCCAGGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGAAGGTCTAGAGTGAGAAACCCTGGAATGAGCTTCCAGGGAGA  600

seq1  TGCTCTTATCAACAGCCTCTGAGTTAAATGGAGAGACTGACTCTGCATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTATCAACAGCCTCTGAGTTAAATGGAGAGACTGACTCTGCATCT  650

seq1  GTGCATAATGTGGACGGACAACGCCGCCAATAATAGTCCTCTGCACAC-A  699
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGCATAATGTGGACGGACAACGCCGCCAATAATAGTCCTCTGCACACAA  700

seq1  AGTACACACACACACACATACACTCAATCACACAACAGCATGCACACATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACACACACACACACATACACTCAATCACACAACAGCATGCACACATC  750

seq1  ATAAAAAGAAGTCTGGGGTGCAGCTAAAGACTCCACAGTCCAATCTTCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGAAGTCTGGGGTGCAGCTAAAGACTCCACAGTCCAATCTTCAA  800

seq1  ACACTGAAAGATACATACTGAAAAGGTCACAGGCAAGAATAGAAGGTTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAAGATACATACTGAAAAGGTCACAGGCAAGAATAGAAGGTTAG  850

seq1  TAGTAGGCTCAAAGTATAAGCGCATGTTGATAACAAAATTAACTCCCTCG  899
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  TAGTAGGCTC-AAGTAT-AGCGCATGTTGATAACAAAATTAACTCCCTCG  898

seq1  ATTTACCATATATTTTAAATTTTGCATAAATGATGGAAAATGGCAGTATG  949
      ||||| |||||| ||||||||||||||||||||||| |||||||||||||
seq2  ATTTA-CATATA-TTTAAATTTTGCATAAATGATGG-AAATGGCAGTATG  945

seq1  AAAATGAATGAAATGCAGGGGAAGATATGGATCTAATTTCATTCTTTTAC  999
       |||||| ||||||||| |||||||||||||||||| ||||||| |||||
seq2  -AAATGATTGAAATGCA-GGGAAGATATGGATCTAA-TTCATTC-TTTAC  991

seq1  ATGTGGATATCCAGTTTCCCCTACACCACTTGCTGAAGATGTTTTATTTT  1049
      ||||||||||||||||| |||||||||||| |||| ||||||||||||||
seq2  ATGTGGATATCCAGTTT-CCCTACACCACTGGCTG-AGATGTTTTATTTT  1039

seq1  CTCCTGTGTATCTTTCTGGCATCTTAGTTAACCATCAGATGGCTGTAGTT  1099
      || |||| |||| |||||||||||||||  || ||| ||  |||||||||
seq2  CT-CTGT-TATC-TTCTGGCATCTTAGT--ACAATC-GAATGCTGTAGTT  1083

seq1  ATAAGTAATCATCTTTGGATCTTTGATTTTATTACACTGGTCTAAATGTC  1149
      ||| |||  | ||||| |||| ||||||||||||| ||||| ||||||| 
seq2  ATAGGTA--CTTCTTT-GATC-TTGATTTTATTAC-CTGGT-TAAATGT-  1126

seq1  TATTTTGTGCCAGTCAC  1166
      |  |||||| |||||||
seq2  TCATTTGTG-CAGTCAC  1142