BAC Information

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BAC

Clone NameB6Ng01-056B14
Chromosome13 (Build37)
Map Location 10,127,696 - 10,220,396
singlet/doubletdoublet
Overlap geneChrm3
Upstream geneLarp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, LOC100039604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056B14.bB6Ng01-056B14.g
ACCDH878366DH878367
length1,1871,072
definitionDH878366|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B14, 5' end.DH878367|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,127,696 - 10,128,599)(10,219,311 - 10,220,396)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctgaagtccactttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttacagtagctttgaagtttca
tgaggtcccatttgtcaattcttgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatatcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgacgttagtacaaggagatagaaatggatcaattcgc
attcttctacatgataaccgccagttgtgccagcaccatttgttgaaaat
gctgtctttttttcactggatgattttagctttcttgtcaaagatcaggt
gaccataggtgtgtggattcatctctgggtcttcaattctgttccctagt
ttgttttctattgctgtgatagacatcagcaacttgagaagggaaggtgg
tacttgatttaaagttagagtccatagttatgggaattaaaggtgactct
tggtgcaggaagctggaggcaggaactgaagtagagaccatattggaatg
ctctttaatgacttgctcagctgcccttgttatgtagtccagttccattg
cccaaggatggtgcttcccacagtgggcagagccctccttctcccataac
aaatgtttagatttcatgccacataacaaacccttaatgatttaatgagg
tagcacaggatcatataaaatcaaagtatagatcaagcctgttggttcag
cagccattaaatcacatatactaaaagatgcagaaaaccaacaaagaaac
ttggaataaacaaacacacatgatttatatctagtcatcccatttattat
cagttctactgtatacaaataccaaatgctagtttcagtttgattttttt
tatcataaagcctagaaatgagctgaaatgcatatatagcccaattccac
gaatctgaccccattttgttctatgtaagttaaaatggaataggatttaa
gcaggctgtggctgaagacaaagcaaactttattcac
gaattcagttctcaaaacctatactgtgaaaggagaataacttctacaag
ttgtcctctgatctccgtacacatattgaagagggtgggcctgtcaatac
acacaaacacacacacacagagagagagagagagagagagagagaggcag
gcagacagagacagagaggcagaaaagcagaaacagagacagagagaaag
tgatatacagagagatggatgaaaatgatacatagatgcattatgaataa
atattctattggctttttaaagcctattagaaattgtaagcaagatatct
atgttttatttcttatgaagtttgggcagttaccacacttaaaatttgtt
ttgttttgttttgttttgaggaaaggaaatgaggaagaaagaagtggaat
gtagaccacatcataaaatgaagggccaaggggctttaactttcactttc
ctaaccacacactcagcactggatatgaaatgtgtcttgttatgaacaaa
catccaatattgtcctctgggcttgcattggacaaaattcagtagtacat
aatgagtggcattttccacatgagtcacgatttgttcccaaggtgggaag
tgctgataacgaaggggttgagggagccaagctcgtgaccccatgccttg
tgtccatgtctgtagctcagcagttgccaacctgggggctctcactcaca
ccagaacgtcatggcttgtcccctgtccatgttaattataaactacctga
agcagccagagtgtttggttcatccaccattatatccacccacgttaaca
gccagtgagtagttcacgtgtaatttccatctgacttttaattccggcct
gctgttatctgtggcttctgtgtatgctctctccctgtttgctttttaat
agcttaagattggatagggttttccatgagagagcagtggtggttgtgca
ggagctgtagataacagctcttggggtggtacgtcctaggtaccctgatc
atagtgtgagctactgctgactgtccatgagtaccagatgccctggtccc
tttcccacttcctgtccctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10127696_10128599
seq2: B6Ng01-056B14.b_352_1232

seq1  CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACT  50

seq1  TAGATTTGACGTTAGTACAAGGAGATAGAAATGGATCAATTCGCATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGACGTTAGTACAAGGAGATAGAAATGGATCAATTCGCATTCTT  100

seq1  CTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATGATAACCGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTC  150

seq1  TTTTTTTCACTGGATGATTTTAGCTTTCTTGTCAAAGATCAGGTGACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCACTGGATGATTTTAGCTTTCTTGTCAAAGATCAGGTGACCAT  200

seq1  AGGTGTGTGGATTCATCTCTGGGTCTTCAATTCTGTTCCCTAGTTTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTGGATTCATCTCTGGGTCTTCAATTCTGTTCCCTAGTTTGTTT  250

seq1  TCTATTGCTGTGATAGACATCAGCAACTTGAGAAGGGAAGGTGGTACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGCTGTGATAGACATCAGCAACTTGAGAAGGGAAGGTGGTACTTG  300

seq1  ATTTAAAGTTAGAGTCCATAGTTATGGGAATTAAAGGTGACTCTTGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAGTTAGAGTCCATAGTTATGGGAATTAAAGGTGACTCTTGGTGC  350

seq1  AGGAAGCTGGAGGCAGGAACTGAAGTAGAGACCATATTGGAATGCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTGGAGGCAGGAACTGAAGTAGAGACCATATTGGAATGCTCTTT  400

seq1  AATGACTTGCTCAGCTGCCCTTGTTATGTAGTCCAGTTCCATTGCCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTGCTCAGCTGCCCTTGTTATGTAGTCCAGTTCCATTGCCCAAG  450

seq1  GATGGTGCTTCCCACAGTGGGCAGAGCCCTCCTTCTCCCATAACAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGCTTCCCACAGTGGGCAGAGCCCTCCTTCTCCCATAACAAATGT  500

seq1  TTAGATTTCATGCCACATAACAAACCCTTAATGATTTAATGAGGTAGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTCATGCCACATAACAAACCCTTAATGATTTAATGAGGTAGCAC  550

seq1  AGGATCATATAAAATCAAAGTATAGATCAAGCCTGTTGGTTTCAGCAGCC  600
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGGATCATATAAAATCAAAGTATAGATCAAGCCTGTTGG-TTCAGCAGCC  599

seq1  AATTAAATCACATATACTAAAAGATGCAAGAAAAACCAACAAAGAAACTT  650
       |||||||||||||||||||||||||||   |||||||||||||||||||
seq2  -ATTAAATCACATATACTAAAAGATGCA--GAAAACCAACAAAGAAACTT  646

seq1  GGAATAAAACAAACACACATGATTTTAATATCTAGTCATCCCATTTATTA  700
      ||||| |||||||||||||||||||  |||||||||||||||||||||||
seq2  GGAAT-AAACAAACACACATGATTT--ATATCTAGTCATCCCATTTATTA  693

seq1  TTCAGTTCTACTGTATACAAATACCAAATGCTAGTTTCAGTTTTGATTTT  750
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  -TCAGTTCTACTGTATACAAATACCAAATGCTAGTTTCAG-TTTGATTTT  741

seq1  TTTTAATCATAAAGCCCTAGAAAATTGAAGCTGAAAATGCATAT-TAGCT  799
      |||| ||||||||| ||||||||  || ||||| |||||||||| |||| 
seq2  TTTT-ATCATAAAG-CCTAGAAA--TG-AGCTG-AAATGCATATATAGCC  785

seq1  CAATTCCTACAGATTCTGAACTCCATTTTTTGTTCATAGTAAGCTTAAAA  849
      ||||||| || || |||| || |||  ||||||||   ||||| ||||||
seq2  CAATTCC-AC-GAATCTG-ACCCCA--TTTTGTTCTATGTAAG-TTAAAA  829

seq1  TGAAATCAGAATTTTAAGCAGGCTGTGGCTGAAGACAAAGCAGACATTTA  899
      || |||  ||  |||||||||||||||||||||||||||||| || ||||
seq2  TGGAATAGGA--TTTAAGCAGGCTGTGGCTGAAGACAAAGCAAAC-TTTA  876

seq1  TTCAC  904
      |||||
seq2  TTCAC  881

seq1: chr13_10219311_10220396
seq2: B6Ng01-056B14.g_71_1142 (reverse)

seq1  GAGAGGGACAGGAAGTGGGGAAAGTGGACCAGTGGCATCTGGCTACTCAT  50
      |||||||||||||||| ||||||| ||||||| ||||||||| |||||||
seq2  GAGAGGGACAGGAAGT-GGGAAAG-GGACCAG-GGCATCTGG-TACTCAT  46

seq1  GGACAGTGCAGCAGTAGCTACACACTATGATCAGGGTACCTAGGACTGTA  100
      ||||||| ||||||||||| |||||||||||||||||||||||||| |||
seq2  GGACAGT-CAGCAGTAGCT-CACACTATGATCAGGGTACCTAGGAC-GTA  93

seq1  CCACCCCAAGAGCTGTTATTCTTAACAGCCTCCTGCACAACCACCACTGC  150
      |||||||||||||||||| |||  |||| |||||||||||||||||||||
seq2  CCACCCCAAGAGCTGTTA-TCT--ACAG-CTCCTGCACAACCACCACTGC  139

seq1  TCTCTTCATGGAAAACCCTATCCAATCTTAAGCTACTAAAAAAGCAAACA  200
      |||| |||||||||||||||||||||||||||||| | ||||||||||||
seq2  TCTC-TCATGGAAAACCCTATCCAATCTTAAGCTA-TTAAAAAGCAAACA  187

seq1  AGGAGAGAGCATACACAGAAGCCACAGATAACAGCATGGCCGGAATTAAA  250
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGGAGAGAGCATACACAGAAGCCACAGATAACAGCA-GGCCGGAATTAAA  236

seq1  AGTCAGATGGAATTTACACGTGAACTACTCACTGGCTGTTAACGTGGGTG  300
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGTCAGATGGAAATTACACGTGAACTACTCACTGGCTGTTAACGTGGGTG  286

seq1  GATATAATGGTGGATGAACCAAACACTCTGGCTGCTTCAGGTAGTTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATAATGGTGGATGAACCAAACACTCTGGCTGCTTCAGGTAGTTTATA  336

seq1  ATTAACATGGACAGGGGACAAGCCATGACGTTCTGGTGTGAGTGAGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACATGGACAGGGGACAAGCCATGACGTTCTGGTGTGAGTGAGAGCC  386

seq1  CCCAGGTTGGCAACTGCTGAGCTACAGACATGGACACAAGGCATGGGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTGGCAACTGCTGAGCTACAGACATGGACACAAGGCATGGGGTC  436

seq1  ACGAGCTTGGCTCCCTCAACCCCTTCGTTATCAGCACTTCCCACCTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGCTTGGCTCCCTCAACCCCTTCGTTATCAGCACTTCCCACCTTGGG  486

seq1  AACAAATCGTGACTCATGTGGAAAATGCCACTCATTATGTACTACTGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATCGTGACTCATGTGGAAAATGCCACTCATTATGTACTACTGAAT  536

seq1  TTTGTCCAATGCAAGCCCAGAGGACAATATTGGATGTTTGTTCATAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCAATGCAAGCCCAGAGGACAATATTGGATGTTTGTTCATAACAA  586

seq1  GACACATTTCATATCCAGTGCTGAGTGTGTGGTTAGGAAAGTGAAAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATTTCATATCCAGTGCTGAGTGTGTGGTTAGGAAAGTGAAAGTTA  636

seq1  AAGCCCCTTGGCCCTTCATTTTATGATGTGGTCTACATTCCACTTCTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTTGGCCCTTCATTTTATGATGTGGTCTACATTCCACTTCTTTC  686

seq1  TTCCTCATTTCCTTTCCTCAAAACAAAACAAAACAAAACAAATTTTAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATTTCCTTTCCTCAAAACAAAACAAAACAAAACAAATTTTAAGT  736

seq1  GTGGTAACTGCCCAAACTTCATAAGAAATAAAACATAGATATCTTGCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAACTGCCCAAACTTCATAAGAAATAAAACATAGATATCTTGCTTA  786

seq1  CAATTTCTAATAGGCTTTAAAAAGCCAATAGAATATTTATTCATAATGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCTAATAGGCTTTAAAAAGCCAATAGAATATTTATTCATAATGCA  836

seq1  TCTATGTATCATTTTCATCCATCTCTCTGTATATCACTTTCTCTCTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTATCATTTTCATCCATCTCTCTGTATATCACTTTCTCTCTGTCT  886

seq1  CTGTTTCTGCTTTTCTGCCTCTCTGTCTCTGTCTGCCTGCCTCTCTCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTGCTTTTCTGCCTCTCTGTCTCTGTCTGCCTGCCTCTCTCTCT  936

seq1  CTCTCTCTCTCTCTCTCTGTGTGTGTGTGTTTGTGTGTATTGACAGGCCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTGTGTGTGTGTGTTTGTGTGTATTGACAGGCCC  986

seq1  ACCCTCTTCAATATGTGTACGGAGATCAGAGGACAACTTGTAGAAGTTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTTCAATATGTGTACGGAGATCAGAGGACAACTTGTAGAAGTTAT  1036

seq1  TCTCCTTTCACAGTATAGGTTTTGAGAACTGAATTC  1086
      ||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTCACAGTATAGGTTTTGAGAACTGAATTC  1072