BAC Information

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BAC

Clone NameB6Ng01-056B16
Chromosome13 (Build37)
Map Location 62,767,211 - 62,862,692
singlet/doubletdoublet
Overlap geneLOC630857, EG630978, EG435366
Upstream geneEG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493
Downstream geneLOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056B16.bB6Ng01-056B16.g
ACCDH878370DH878371
length1,110480
definitionDH878370|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B16, 5' end.DH878371|Mus musculus domesticus DNA, BAC clone: B6Ng01-056B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,861,582 - 62,862,692)(62,767,211 - 62,767,696)
sequence
gaattctgttcatctggaaaacctttactaatacagacatgttttttcac
cttcccaagtaggaagatgtgctggcgaacaataatgctccttagtgagt
ggcatccatcccctccttttttcccagggctgtctggagtctcatatgta
gcaattgcatatcagctgcggttttcctgatgtcagtgtaaaatgagaga
agcaaacatcacattttgtgtcctaaaatctctctttaattgtaaatatc
cttggaacctatagttcactctttgtcaagttgaataatgtactctgcaa
ggtgtggctcttaattccttgttggaggagggggcagagcgaggagtagg
agaaccgggggcggccttggaggagcaagaagaagaaattcctgctgagt
tctggatgacagaaagatagactattggaggacaggactgaaagaaagtc
ttgcagatctgaaaagggtcagctcctggataagaaacccgatcttggaa
gccctatgctgtgtgccttcagtgcactctaaccctaagggaggtgctca
tgtcaatcaagtctcactaaccaatcagggcctccggataggcccgccaa
tagaagtagaggcgtgttctttagtgtgccttgttcccctgctctgcgtt
ccgctccgttgcgagcaggctgaaaaattggtgtgatgtgttttgatgtc
tgctgacaggggccttagggaattgccagcgatctacaacgtggcgacat
ggtgagcgtgtgaccactgcccttaaccggaaggagcagggagttaagca
gctggagtccgggtgatgggatacaggggaccagtcctgactgttcttgg
ttcctcttcaggcagcggaggggaaagagtgtttgaagttgacaagactt
ggttttcagggatgtttagggtgctgtttagtattagacatttgcctatc
ttaagtctcagtcgcgttgcagccgaagctgacctgcccgagttcctctg
aagcaaggctggacgctgcaattctctggtatttagagcctcctcttaaa
agacaggggattagtgaagtagcttttgttctattctccacagaaactgg
gctgccctaa
tttgtttagctctgtaacccattttttacacacagaccatatggtactca
ggggaatggaaaacaagggtgtggatgcttcagtcctgcatagaaaaggg
aacaagatggttgaaataggtagaagaaataggaacctgggatcctttat
ggcacaccaggcctttttgttgattgtgtgtgaccccactattctctttc
aagcagatttttaaaatactgaccttgatctggagatggacctagtggcc
atattaatcagggtcgttttcctttttatgatctgaagccatatttcctg
acaattccaatgaacatacatgtgtattctagtatacctaaaatatctta
tgatgctaggttactgtgctacttacctgtgggtggtttttttgtttgtt
tgtttgtttttgttttctgtttttttgtttttctttttgtttttgttttt
gttttttttttttttttttttggaacaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62861582_62862692
seq2: B6Ng01-056B16.b_45_1154 (reverse)

seq1  TTAGAGCAGCCCAGTTTCTGTGGAG-ATAGAACAAAAGCTAC-TCACTTA  48
      |||| |||||||||||||||||||| |||||||||||||||| |||| ||
seq2  TTAGGGCAGCCCAGTTTCTGTGGAGAATAGAACAAAAGCTACTTCAC-TA  49

seq1  ATCCCCTGTCTTTTTAAGAGGAGGCTCTAAATACCAGAG-ATTGCAGCGT  97
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  ATCCCCTGTC-TTTTAAGAGGAGGCTCTAAATACCAGAGAATTGCAGCGT  98

seq1  CCAGCCTTGCCTCAGAGGAACTCGGGCAGGTCAGCTTCGGCTGCAACGCG  147
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTTGCTTCAGAGGAACTCGGGCAGGTCAGCTTCGGCTGCAACGCG  148

seq1  ACTGAGACTTAAGATAGGCAAATGTCTTAATACTAAACAGCAACCCTAAA  197
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  ACTGAGACTTAAGATAGGCAAATGTC-TAATACTAAACAGC-ACCCTAAA  196

seq1  CATCCCTGAAAACCAAGTCTTGTC-ACCTCAAACACTCTTTCCCCCTCCG  246
      |||||||||||||||||||||||| || ||||||||||||| ||||||||
seq2  CATCCCTGAAAACCAAGTCTTGTCAACTTCAAACACTCTTT-CCCCTCCG  245

seq1  CTGCCTGAAGAGGAACCAAGAACAGTCAGGGCTGGTCCCCTGTATCCCAT  296
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGCCTGAAGAGGAACCAAGAACAGTCAGGACTGGTCCCCTGTATCCCAT  295

seq1  CACCCGGACTCCAGCTGCTTAACTCCCTGCTCCTTCCGGTTAAGGGCAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCGGACTCCAGCTGCTTAACTCCCTGCTCCTTCCGGTTAAGGGCAGT  345

seq1  GGTCACACGCTCACCATGTCGCCACGTTGTAGATCGCTGGCAATTCCCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACACGCTCACCATGTCGCCACGTTGTAGATCGCTGGCAATTCCCTA  395

seq1  AGGCCCCTGTCAGCAGACATCAAAACACATCACACCAATTTTTCAGCCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCTGTCAGCAGACATCAAAACACATCACACCAATTTTTCAGCCTG  445

seq1  CTCGCAACGGAGCGGAACGCAGAGCAGGGGAACAAGGCACACTAAAGAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCAACGGAGCGGAACGCAGAGCAGGGGAACAAGGCACACTAAAGAAC  495

seq1  ACGCCTCTACTTCTATTGGCGGGCCTATCCGGAGGCCCTGATTGGTTAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTCTACTTCTATTGGCGGGCCTATCCGGAGGCCCTGATTGGTTAGT  545

seq1  GAGACTTGATTGACATGAGCACCTCCCTTAGGGTTAGAGTGCACTGAAGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTGATTGACATGAGCACCTCCCTTAGGGTTAGAGTGCACTGAAGG  595

seq1  CACACAGCATAGGGCTTCCAAGATCGGGTTTCTTATCCAGGAGCTGACCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCATAGGGCTTCCAAGATCGGGTTTCTTATCCAGGAGCTGACCC  645

seq1  TTTTCAGATCTGCAAGACTTTCTTTCAGTCCTGTCCTCCAATAGTCTATC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGATCTGCAAGACTTTCTTTCAGTCCTGTCCTCCAATAGTCTATC  695

seq1  TTTCTGTCATCCAGAACTCAGCAGGAATTTCTTCTTCTTGCTCCTCCAAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCATCCAGAACTCAGCAGGAATTTCTTCTTCTTGCTCCTCCAAG  745

seq1  GCCGCCCCCGGTTCTCCTACTCCTCGCTCTGCCCCCTCCTCCAACAAGGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCCCCCGGTTCTCCTACTCCTCGCTCTGCCCCCTCCTCCAACAAGGA  795

seq1  ATTAAGAGCCACACCTTGCAGAGTACATTATTCAACTTGACAAAGAGTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGCCACACCTTGCAGAGTACATTATTCAACTTGACAAAGAGTGA  845

seq1  ACTATAGGTTCCAAGGATATTTACAATTAAAGAGAGATTTTAGGACACAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAGGTTCCAAGGATATTTACAATTAAAGAGAGATTTTAGGACACAA  895

seq1  AATGTGATGTTTGCTTCTCTCATTTTACACTGACATCAGGAAAACCGCAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGATGTTTGCTTCTCTCATTTTACACTGACATCAGGAAAACCGCAG  945

seq1  CTGATATGCAATTGCTACATATGAGACTCCAGACAGCCCTGGGAAAAAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATGCAATTGCTACATATGAGACTCCAGACAGCCCTGGGAAAAAAG  995

seq1  GAGGGGATGGATGCCACTCACTAAGGAGCATTATTGTTCGCCAGCACATC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGATGGATGCCACTCACTAAGGAGCATTATTGTTCGCCAGCACATC  1045

seq1  TTCCTACTTGGGAAGGTGAAAAAACATGTCTGTATTAGTAAAGGTTTTCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTTGGGAAGGTGAAAAAACATGTCTGTATTAGTAAAGGTTTTCC  1095

seq1  AGATGAACAGAATTC  1111
      |||||||||||||||
seq2  AGATGAACAGAATTC  1110

seq1: chr13_62767211_62767696
seq2: B6Ng01-056B16.g_68_553

seq1  GAATTCTTTGTTTAGCTCTGTAACCCATTTTTTACACACAGACCATATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTAACCCATTTTTTACACACAGACCATATGG  50

seq1  TACTCAGGGGAATGGAAAACAAGGGTGTGGATGCTTCAGTCCTGCATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGGGGAATGGAAAACAAGGGTGTGGATGCTTCAGTCCTGCATAGA  100

seq1  AAAGGGAACAAGATGGTTGAAATAGGTAGAAGAAATAGGAACCTGGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAACAAGATGGTTGAAATAGGTAGAAGAAATAGGAACCTGGGATC  150

seq1  CTTTATGGCACACCAGGCCTTTTTGTTGATTGTGTGTGACCCCACTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGGCACACCAGGCCTTTTTGTTGATTGTGTGTGACCCCACTATTC  200

seq1  TCTTTCAAGCAGATTTTTAAAATACTGACCTTGATCTGGAGATGGACCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAAGCAGATTTTTAAAATACTGACCTTGATCTGGAGATGGACCTA  250

seq1  GTGGCCATATTAATCAGGGTCGTTTTCCTTTTTATGATCTGAAGCCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCATATTAATCAGGGTCGTTTTCCTTTTTATGATCTGAAGCCATAT  300

seq1  TTCCTGACAATTCCAATGAACATACATGTGTATTCTAGTATACCTAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGACAATTCCAATGAACATACATGTGTATTCTAGTATACCTAAAAT  350

seq1  ATCTTATGATGCTAGGTTACTGTGCTACTTACCTGTGGGTGGTTTTTTTG  400
      |||||||||||||||||||||||||||||||||||||             
seq2  ATCTTATGATGCTAGGTTACTGTGCTACTTACCTGTGNNNNNNNNNNNNN  400

seq1  TTTGTTTGTTTGTTTTTGTTTTCTGTTTTTTTGTTTTTCTTTTTGTTTTT  450
          ||||||||||||||||||||||||||||||||||||||||||||||
seq2  NNNNTTTGTTTGTTTTTGTTTTCTGTTTTTTTGTTTTTCTTTTTGTTTTT  450

seq1  GTTTTTGTTTTTTTTTTTTTTTTTTTTGAGACAGGG  486
      ||||||||||||||||||||||||||||  ||||||
seq2  GTTTTTGTTTTTTTTTTTTTTTTTTTTGGAACAGGG  486