BAC Information

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BAC

Clone NameB6Ng01-056G17
Chromosome13 (Build37)
Map Location 60,646,111 - 60,739,382
singlet/doubletdoublet
Overlap geneDapk1
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneLOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056G17.bB6Ng01-056G17.g
ACCDH878581DH878582
length1,102529
definitionDH878581|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G17, 5' end.DH878582|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,646,111 - 60,647,219)(60,738,848 - 60,739,382)
sequence
gaattctttcagtgtactgcatgcattctgcttttattaaggtcacgcag
aaaaggaacaaatcatggcccgtatttcagctagtgagctctaagccctg
aaggcaaataaaggaattgttgaaatgtccaaggaagggaggaatctggc
cttagaaaccctcagtctcatggatgccattaatttctggacatgttcaa
tacaaatgtgatttagcaggaacacaaggggcttcagaaaggaaagtaca
tcactgaaactcagaagctcagagccagaagcaagctaaacaagggcttt
gttcaacttaattctttccttggaaaacacattcaaaagtggttacctca
ggccacagaagttaagccaggtcacccaggacagtcagcccatggtatca
cacagaacgtcgttcaccttttctgccccaagagtgcatcttggcttaga
tcaataaccaagccaaccacttgcttgggcatctcctcctgtttggcgct
cctgacatccacgttgtgattttgtagatgtccagctgccttcaggtcca
ggaacagcttcctcataggaacaattaatgtcactcacctgctataaaca
ctggctcaaatcttggcagaacccatcttcctgatgggaccattttcaag
atgttcctgagaaactggaaggctgggtgcttgctgccaagaaggaagtc
cctggtgacagggtccaagcttttcagtgaagtgggatttggcactgagg
tgtgctttgcagcttccaggctctacaaggagctggctagaggaggatgc
taaaaaaaattgggaaattgctttcttctttacatgacttacttcacgaa
taattgatagaggctcatcaccataactaaacattgtgttaagcatcctt
gaggacatcagctttctgaaatggggcactattaagcaagtggcagtgta
gggcttcataattatgaattactagtcacgatgaatacagatacctgtaa
tcagagaaagatggtattagagccacctcttcctttggattcatttaagc
acctgagaaaaatcagtttgatttgaatttggtttgactgctacgtaccc
tt
ctcagataaggacaactgatgtcacagaacgcacagggggacacggtagg
accatcctgaggatcattcgtggcttgtgttactcttactaattatgtca
gagtgcacctctgacttcagaaaatccaggtcaatacatttaagattcag
agttcagggatacgagggggcggggcggggggaggggtgtaactctgtag
atcaagtaccttgcctcacatgcaagaagcccagggttctgtccctagcc
ccacataagctgggtgtggtgagaagtggagctgggaggtcacccacaac
tacaaagagttccaggccaaaatgtatgtgagactccatcttgaataggg
gaaggggaccaatagttataagcaacaggacctgtccccataaaatgttg
ttaattgtctgtatggaggaagaaaaacaatatgctgtttagctggtgac
tatgcatcccacttcccctcatccctctagcctgtgataaaggccctttc
cttactggattattggttctgccaagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60646111_60647219
seq2: B6Ng01-056G17.b_44_1145

seq1  GAATTCTTTCAGTGTACTGCATGCATTCTGCTTTTATTAAGGTCACGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGTGTACTGCATGCATTCTGCTTTTATTAAGGTCACGCAG  50

seq1  AAAAGGAACAAATCATGGCCCGTATTTCAGCTAGTGAGCTCTAAGCCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAACAAATCATGGCCCGTATTTCAGCTAGTGAGCTCTAAGCCCTG  100

seq1  AAGGCAAATAAAGGAATTGTTGAAATGTCCAAGGAAGGGAGGAATCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAATAAAGGAATTGTTGAAATGTCCAAGGAAGGGAGGAATCTGGC  150

seq1  CTTAGAAACCCTCAGTCTCATGGATGCCATTAATTTCTGGACATGTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAACCCTCAGTCTCATGGATGCCATTAATTTCTGGACATGTTCAA  200

seq1  TACAAATGTGATTTAGCAGGAACACAAGGGGCTTCAGAAAGGAAAGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATGTGATTTAGCAGGAACACAAGGGGCTTCAGAAAGGAAAGTACA  250

seq1  TCACTGAAACTCAGAAGCTCAGAGCCAGAAGCAAGCTAAACAAGGGCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAAACTCAGAAGCTCAGAGCCAGAAGCAAGCTAAACAAGGGCTTT  300

seq1  GTTCAACTTAATTCTTTCCTTGGAAAACACATTCAAAAGTGGTTACCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACTTAATTCTTTCCTTGGAAAACACATTCAAAAGTGGTTACCTCA  350

seq1  GGCCACAGAAGTTAAGCCAGGTCACCCAGGACAGTCAGCCCATGGTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGAAGTTAAGCCAGGTCACCCAGGACAGTCAGCCCATGGTATCA  400

seq1  CACAGAACGTCGTTCACCTTTTCTGCCCCAAGAGTGCATCTTGGCTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACGTCGTTCACCTTTTCTGCCCCAAGAGTGCATCTTGGCTTAGA  450

seq1  TCAATAACCAAGCCAACCACTTGCTTGGGCATCTCCTCCTGTTTGGCGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACCAAGCCAACCACTTGCTTGGGCATCTCCTCCTGTTTGGCGCT  500

seq1  CCTGACATCCACGTTGTGATTTTGTAGATGTCCAGCTGCCTTCAGGTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATCCACGTTGTGATTTTGTAGATGTCCAGCTGCCTTCAGGTCCA  550

seq1  GGAACAGCTTCCTCATAGGAACAATTAATGTCACTCACCTGCTATAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGCTTCCTCATAGGAACAATTAATGTCACTCACCTGCTATAAACA  600

seq1  CTGGCTCAAATCTTGGCAGAACCCATCTTCCTGATGGGACCATTTTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCAAATCTTGGCAGAACCCATCTTCCTGATGGGACCATTTTCAAG  650

seq1  ATGTTCCTGAGAAACTGGAAGGCTGGGTGCTTGCTGCCAAGAAGGAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCTGAGAAACTGGAAGGCTGGGTGCTTGCTGCCAAGAAGGAAGTC  700

seq1  CCTGGTGACAGGGTCCAAGCTTTTCAGTGAAGTGGGATTTGGCACTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGACAGGGTCCAAGCTTTTCAGTGAAGTGGGATTTGGCACTGAGG  750

seq1  TGTGCTTTGCAGCTTCCAGGCTCTACAAGGAGCTGGCTAGAGGAGGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTGCAGCTTCCAGGCTCTACAAGGAGCTGGCTAGAGGAGGATGC  800

seq1  TAAAAAAAATTGGGAAATTGCTTTCTTCTTTACATGACTTACTTCAGGAA  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TAAAAAAAATTGGGAAATTGCTTTCTTCTTTACATGACTTACTTCACGAA  850

seq1  TAATTGATAGAGGCTCATCACCATAACTAAACATTGTGTTAAGCATCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGATAGAGGCTCATCACCATAACTAAACATTGTGTTAAGCATCCTT  900

seq1  GAGGACATCAGCTTTCTGAAATGGGGCACTATTAAGGCAAGTGGCAGTGT  950
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GAGGACATCAGCTTTCTGAAATGGGGCACTATTAA-GCAAGTGGCAGTGT  949

seq1  AGGGCTTCATAAATTATGAATTACTAGTCACGGATGAATACAGATAACCT  1000
      |||||||||| |||||||||||||||||||| ||||||||||||| ||||
seq2  AGGGCTTCAT-AATTATGAATTACTAGTCAC-GATGAATACAGAT-ACCT  996

seq1  GTAATCAGGAGACAGATGGTAATTAGAGGCAACTCTT-CTTTTGATTCAA  1049
      ||||||| |||| ||||||| ||||||| || ||||| |||| |||||| 
seq2  GTAATCA-GAGAAAGATGGT-ATTAGAGCCACCTCTTCCTTTGGATTCAT  1044

seq1  TTAAGCACCTGAG-AAAATCAGTTTTGATTTGGATTTGTGTTTGACTGCT  1098
      ||||||||||||| |||||||| ||||||||| ||||| |||||||||||
seq2  TTAAGCACCTGAGAAAAATCAG-TTTGATTTGAATTTG-GTTTGACTGCT  1092

seq1  ACAGTACCCTT  1109
      || ||||||||
seq2  AC-GTACCCTT  1102

seq1: chr13_60738848_60739382
seq2: B6Ng01-056G17.g_67_601 (reverse)

seq1  AGGCTTGGCAGAACCAATAATCCAGTAAGGAAAGGGCCTTTATCACAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGCTTGGCAGAACCAATAATCCAGTAAGGAAAGGGCCTTTATCACAGGC  50

seq1  TAGAGGGATGAGGGGAAGTGGGATGCATAGTCACCAGCTAAACAGCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGATGAGGGGAAGTGGGATGCATAGTCACCAGCTAAACAGCATAT  100

seq1  TGTTTTTCTTCCTCCATACAGACAATTAACAACATTTTATGGGGACAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCTTCCTCCATACAGACAATTAACAACATTTTATGGGGACAGGT  150

seq1  CCTGTTGCTTATAACTATTGGTCCCCTTCCCCTATTCAAGATGGAGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTGCTTATAACTATTGGTCCCCTTCCCCTATTCAAGATGGAGTCTC  200

seq1  ACATACATTTTGGCCTGGAACTCTTTGTAGTTGTGGGTGACCTCCCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATTTTGGCCTGGAACTCTTTGTAGTTGTGGGTGACCTCCCAGCT  250

seq1  CCACTTCTCACCACACCCAGCTTATGTGGGGCTAGGGACAGAACCCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCTCACCACACCCAGCTTATGTGGGGCTAGGGACAGAACCCTGGG  300

seq1  CTTCTTGCATGTGAGGCAAGGTACTTGATCTACAGAGTTACACCCCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCATGTGAGGCAAGGTACTTGATCTACAGAGTTACACCCCTCCC  350

seq1  CCCGCCCCGCCCCCTCGTATCCCTGAACTCTGAATCTTAAATGTATTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCCGCCCCCTCGTATCCCTGAACTCTGAATCTTAAATGTATTGAC  400

seq1  CTGGATTTTCTGAAGTCAGAGGTGCACTCTGACATAATTAGTAAGAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATTTTCTGAAGTCAGAGGTGCACTCTGACATAATTAGTAAGAGTAA  450

seq1  CACAAGCCACGAATGATCCTCAGGATGGTCCTACCGTGTCCCCCTGTGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCCACGAATGATCCTCAGGATGGTCCTACCGTGTCCCCCTGTGCG  500

seq1  TTCTGTGACATCAGTTGTCCTTATCTGAGGAATTC  535
      |||||||||||||||||||||||||||||||||||
seq2  TTCTGTGACATCAGTTGTCCTTATCTGAGGAATTC  535