BAC Information

Click to search

BAC

Clone NameB6Ng01-056O08
Chromosome13 (Build37)
Map Location 28,998,854 - 29,072,635
singlet/doubletdoublet
Overlap geneSox4
Upstream geneLOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik
Downstream geneLOC100041135, Cdkal1, E2f3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056O08.bB6Ng01-056O08.g
ACCDH878918DH878919
length431948
definitionDH878918|Mus musculus domesticus DNA, BAC clone: B6Ng01-056O08, 5' end.DH878919|Mus musculus domesticus DNA, BAC clone: B6Ng01-056O08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,072,199 - 29,072,635)(28,998,854 - 28,999,800)
sequence
atagaagttggtaattggctggaagaaagggaggaaaaaggagactactg
tctgtctcgcttcggttctccaagacagaaagcccgagacaagaattcaa
gtccaaatagatcatttgagaagaatggggaatgttggaatgctggtagg
agcatgcagatgtggcatcagaaagaaaggcagcaaacagggtgtgtcat
caagctctgtagactgagaatgtctgcattatgtcccatgaagaaatcct
gcacatggggaaaaaaaaaaagcctcagcactgcctcagtcacgagactg
ggactggaaacaccacacagtcccgtaattcactggctgatgagctttca
gtattcaatatttccagtttgccttcttgcttactaaaaggtcctcacgc
caaaaaaaaagggggtgggggtggggggatt
gaattcaccttatcaaataagtctgctcgctttgacattttgaaggacac
gtgacaatgcagcctctgacctcaaacctcagctgtcagtaagcttggtc
gggtagcaccctatgtcacaggctcgacgtccagcatcccaggctaccct
gtacctgcttgcaccctagtaagtctccgtctttgacttctgtcctggac
acttggaaaggcacgtggtctgggtcatacagaggtcagcgtgaaacagt
ctaggtagatcaatagaaacgtactggaaacacaagttcatttacgaagg
ttaatacattaaacagatataaatcaatccaggaaatgagttagatctcc
ctgagaacctgtggtacccattcttgtgtagcctggcctgacagatggtc
cctatctatggaagctttggttgaagtcaagttagggaaacagctttctt
cccttaggagggctcacctagcacacaggaaagcctgggttgaatctgaa
gcagcccataaacctggtatggtgggggtacacctgcagcgccaggattt
gggaggtgaatgtggtagatcgggagttcaagatcactcttagctaccac
atacatcctcagcaagtttgaggtggcccctgggatacatgagactctat
aaggcaggagagttaggaggccaacatcagtctgctctccacagtgagtc
gcatgctagcctgagctacataagatcctgttttaaaaacaaaacaaatg
aaaaataaaaacaagacccccagaattcaaacccaaataaaataaacttg
gttgagttgcttgttttaattttttataaaaccacgagtttttaagtata
gagcacaatgtctaattcctaccttcctttcttggggagatgctctctga
gtggacgaaggggattttgctatcagtatttataattctgattattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29072199_29072635
seq2: B6Ng01-056O08.b_47_483 (reverse)

seq1  AATCCCCCCACCCCCACCCCCTTTTTTTTTGGCGTGAGGACCTTTTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCCCACCCCCACCCCCTTTTTTTTTGGCGTGAGGACCTTTTAGTA  50

seq1  AGCAAGAAGGCAAACTGGAAATATTGAATACTGAAAGCTCATCAGCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAAGGCAAACTGGAAATATTGAATACTGAAAGCTCATCAGCCAGT  100

seq1  GAATTACGGGACTGTGTGGTGTTTCCAGTCCCAGTCTCGTGACTGAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTACGGGACTGTGTGGTGTTTCCAGTCCCAGTCTCGTGACTGAGGCA  150

seq1  GTGCTGAGGCTTTTTTTTTTTCCCCATGTGCAGGATTTCTTCATGGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGGCTTTTTTTTTTTCCCCATGTGCAGGATTTCTTCATGGGACA  200

seq1  TAATGCAGACATTCTCAGTCTACAGAGCTTGATGACACACCCTGTTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAGACATTCTCAGTCTACAGAGCTTGATGACACACCCTGTTTGCT  250

seq1  GCCTTTCTTTCTGATGCCACATCTGCATGCTCCTACCAGCATTCCAACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTTTCTGATGCCACATCTGCATGCTCCTACCAGCATTCCAACAT  300

seq1  TCCCCATTCTTCTCAAATGATCTATTTGGACTTGAATTCTTGTCTCGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATTCTTCTCAAATGATCTATTTGGACTTGAATTCTTGTCTCGGGC  350

seq1  TTTCTGTCTTGGAGAACCGAAGCGAGACAGACAGTAGTCTCCTTTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTCTTGGAGAACCGAAGCGAGACAGACAGTAGTCTCCTTTTTCCT  400

seq1  CCCTTTCTTCCAGCCAATTACCAACTTCTATGAATTC  437
      |||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTTCCAGCCAATTACCAACTTCTATGAATTC  437

seq1: chr13_28998854_28999800
seq2: B6Ng01-056O08.g_73_1020

seq1  GAATTCACCTTAGCAAATAAGTCTGCTCGCTTTGACATTTTGAAGGACAC  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTATCAAATAAGTCTGCTCGCTTTGACATTTTGAAGGACAC  50

seq1  GTGACAATGCAGCCTCTGACCTCAAACCTCAGCTGTCAGTAAGCTTGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAATGCAGCCTCTGACCTCAAACCTCAGCTGTCAGTAAGCTTGGTC  100

seq1  GGGTAGCACCCTATGTCACAGGCTCGACGTCCAGCATCCCAGGCTACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGCACCCTATGTCACAGGCTCGACGTCCAGCATCCCAGGCTACCCT  150

seq1  GTACCTGCTTGCACCCTAGTAAGTCTCCGTCTTTGACTTCTGTCCTGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGCTTGCACCCTAGTAAGTCTCCGTCTTTGACTTCTGTCCTGGAC  200

seq1  ACTTGGAAAGGCACGTGGTCTGGGTCATACAGAGGTCAGCGTGAAACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAAGGCACGTGGTCTGGGTCATACAGAGGTCAGCGTGAAACAGT  250

seq1  CTAGGTAGATCAATAGAAACGTACTGGAAACACAAGTTCATTTACGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTAGATCAATAGAAACGTACTGGAAACACAAGTTCATTTACGAAGG  300

seq1  TTAATACATTAAACAGATATAAATCAATCCAGGAAATGAGTTAGATCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATACATTAAACAGATATAAATCAATCCAGGAAATGAGTTAGATCTCC  350

seq1  CTGAGAACCTGTGGTACCCATTCTTGTGTAGCCTGGCCTGACAGATGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACCTGTGGTACCCATTCTTGTGTAGCCTGGCCTGACAGATGGTC  400

seq1  CCTATCTATGGAAGCTTTGGTTGAAGTCAAGTTAGGGAAACAGCTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCTATGGAAGCTTTGGTTGAAGTCAAGTTAGGGAAACAGCTTTCTT  450

seq1  CCCTTAGGAGGGCTCACCTAGCACACAGGAAAGCCTGGGTTGAATCTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTAGGAGGGCTCACCTAGCACACAGGAAAGCCTGGGTTGAATCTGAA  500

seq1  GCAGCCCATAAACCTGGTATGGTGGGGGTACACCTGCAGCGCCAGGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCATAAACCTGGTATGGTGGGGGTACACCTGCAGCGCCAGGATTT  550

seq1  GGGAGGTGAATGTGGTAGATCGGGAGTTCAAGATCACTCTTAGCTACCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGAATGTGGTAGATCGGGAGTTCAAGATCACTCTTAGCTACCAC  600

seq1  ATACATCCTCAGCAAGTTTGAGGTGG-CCCTGGGATACATGAGACTCTAT  649
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATACATCCTCAGCAAGTTTGAGGTGGCCCCTGGGATACATGAGACTCTAT  650

seq1  AAGGCAGGAGAGTTAGGAGGCCAACATCAGTCTGCTCTCCACAGTGAGTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGGAGAGTTAGGAGGCCAACATCAGTCTGCTCTCCACAGTGAGTC  700

seq1  GCAGGCTAGCCTGAGCTACATAAGATCCTGTTTTAAAAACAAAACAAATG  749
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTAGCCTGAGCTACATAAGATCCTGTTTTAAAAACAAAACAAATG  750

seq1  AAAAATAAAAACAAGACCCCCAGAATTCAAACCCAAATAAAATAAACTTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAAACAAGACCCCCAGAATTCAAACCCAAATAAAATAAACTTG  800

seq1  GTTGAGTTGCTGTTTTTAATTTTTACTAAAACCACGAG-TTTTAAGTAGA  848
      |||||||||||  |||||||||||  |||||||||||| ||||||||| |
seq2  GTTGAGTTGCTTGTTTTAATTTTTTATAAAACCACGAGTTTTTAAGTATA  850

seq1  GAGCAACAATGTCCAATTCCTACCTCCCTTTCCTGGTGAGATGTCTCTCT  898
      |||| |||||||| ||||||||||| |||||| ||| |||||| ||||||
seq2  GAGC-ACAATGTCTAATTCCTACCTTCCTTTCTTGGGGAGATG-CTCTCT  898

seq1  GAGT-GCTGAGGGGTATTTTGCTATCGTTAATTATAATTCTGATTATTTA  947
      |||| |  || ||| |||||||||||  || |||||||||||||||||||
seq2  GAGTGGACGAAGGGGATTTTGCTATCAGTATTTATAATTCTGATTATTTA  948