BAC Information

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BAC

Clone NameB6Ng01-057G23
Chromosome13 (Build37)
Map Location 62,802,658 - 62,961,400
singlet/doubletdoublet
Overlap geneEG435366, LOC380850, LOC630951, Fbp2
Upstream geneEG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978
Downstream geneFbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc, Ptch1, C030010C08Rik, 0610007P08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057G23.bB6Ng01-057G23.g
ACCDH879303DH879304
length1,013894
definitionDH879303|Mus musculus domesticus DNA, BAC clone: B6Ng01-057G23, 5' end.DH879304|Mus musculus domesticus DNA, BAC clone: B6Ng01-057G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,960,381 - 62,961,400)(62,802,658 - 62,803,196)
sequence
gaattctcctgactcagctctccaagtaggtggagatattgaaattattt
atatgtatgcttatagttctaggtacactgaagagctggaaggatatagg
tttctaagacaccgagttggataccaggcacaccgactgattttgaatac
ttagagccactccaccagttgttgtctgaatttatgaggaaagcacagtc
ttacatgttgagcattactctcaaattaatccacatattgggtagccagc
ttgggacccagagccaggtctgtctgccatcagagaaagttaggatatca
cagtaacagagagcatggccaactctaagcagttaattctaggtcacctt
taaaaagtatttctttaagcgtttttgttgggagctattaagataacact
attgtcctgatctctgaattgggcctcttcccccgagaagaaaagagggt
caaaagcgggccaccggcacaccgctccgagaacaaccacagattgttcc
agccctaagtcagcgcggatgtcctgacctcaagataccctgataccgcc
aagttcctgcttccacgtgtaactgcctaagaatgtgcaattctattgcc
cctcccccactgataagtacttctccttttgcttgtattgccccatccct
cccgctgataagtatctgtacttccccttttccttgtgcaattctattgc
cccatccttcctgctgaaaggcacttccccttttgcttgtgcatttaaac
ctcatgcctgactaatacatttgggggctttgatgcattctagaaggtct
ccgtgtcgttattcgcacaaggccctcgtccctctctaccccccatttgg
ttcttaggaggaggtcccctcgagaccctcgattactggacttgctggac
gggtcactttttatgagaccatttcgtgtgtctgtctctacacatgctcc
actacatgcttggtatctggagagcaaagaggggactggagctctcccaa
actagagaaaagt
gaattctttcatgcccgagaagagaattggcacatttgaaagctttatca
cactgacaaatactttcatttgtatgaattaatggtactattgtctaaat
ataaagaggaatcagatcttaagatttttatcactttgcttacattcctg
cagttaccccttcattatgggttggctttcatcttcaaggatacctgaca
aagaatgaatgagcatgtattacatggttcagctttatatattctttttc
tattagagggttttcccatatttgaacaaaagtgggagaactcagccctt
taccacattaagtgtattccaatttttcctggactgtgggtcagactata
tttgcaaagtgaaccaggagaaagagaagcatttccacattcctaggact
caagagaattttctacagaatgaggttgttgataaattgccaatgaagtt
gaaaaaccaatgatatgtgacttgtatcacattcaaaaagtctaccttaa
ctgcaagcaaatgcatgtcttctaagtgttctgggagacagagagaagaa
cactacttcacttaatatcccttaagtacacgtggcgggtatccattagg
acatatgatacatctataaaaggacaactaacaactaaaaagttagaaca
tttcattcactgagtataaacattttgttcctcagtgatatgtgatatag
ggactaaggttacagtacaacattattcttacttcccataagctgcttgt
ctcaatcaacttagtaatgttactattaatatacgagtaacattatcttt
actagactatttgcttcttagaagattttggacctatatgtactacattt
tattgtgtatagcttttacataatgagaagaaatggatgccagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62960381_62961400
seq2: B6Ng01-057G23.b_44_1057 (reverse)

seq1  ACTTTTACTCTAGTTCTGGGA-AGCTCCAGTGCCCTCTCTGACCTCCAGG  49
      |||||| |||||||| ||||| ||||||||| |||||| ||  ||||| |
seq2  ACTTTT-CTCTAGTT-TGGGAGAGCTCCAGTCCCCTCTTTGCTCTCCA-G  47

seq1  ATACCAAGCATGTAAGTGGAGCATGTGTAGGAGACAGACACACGAAATGG  99
      ||||||||||||| ||||||||||||||| ||||||||||||||||||||
seq2  ATACCAAGCATGT-AGTGGAGCATGTGTA-GAGACAGACACACGAAATGG  95

seq1  TCTCATAAAAAGGTGACCCGTCCAGCAGGTCCAGTTATTCGAGGGTCTCG  149
      ||||||||||| ||||||||||||||| |||||| || ||||||||||||
seq2  TCTCATAAAAA-GTGACCCGTCCAGCAAGTCCAG-TAATCGAGGGTCTCG  143

seq1  AGGGGACCTCCTCCTAAGAACCAAATGGGGGGTAGAGAGGGACGAGGGCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGACCTCCTCCTAAGAACCAAATGGGGGGTAGAGAGGGACGAGGGCC  193

seq1  TTGTGCGAATAACGACACGGAGACCTTCTAGAATGCATCAAAGCCCCCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCGAATAACGACACGGAGACCTTCTAGAATGCATCAAAGCCCCCAA  243

seq1  ATGTATTAGTCAGGCCTGAGGTTTAAATGCACAAGCAAAAGGGGAAGTGC  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATGTATTAGTCAGGCATGAGGTTTAAATGCACAAGCAAAAGGGGAAGTGC  293

seq1  CTTTCAGCAGGAAGGATGGGGCAATAGAATTGCACAAGGAAAAGGGGAAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCAGGAAGGATGGGGCAATAGAATTGCACAAGGAAAAGGGGAAG  343

seq1  TACAGATACTTATCAGCGGGAGGGATGGGGCAATACAAGCAAAAGGAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATACTTATCAGCGGGAGGGATGGGGCAATACAAGCAAAAGGAGAA  393

seq1  GTACTTATCAGTGGGGGAGGGGCAATAGAATTGCACATTCTTAGGCAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTATCAGTGGGGGAGGGGCAATAGAATTGCACATTCTTAGGCAGTT  443

seq1  ACACGTGGAAGCAGGAACTTGGCGGTATCAGGGTATCTTGAGGTCAGGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTGGAAGCAGGAACTTGGCGGTATCAGGGTATCTTGAGGTCAGGAC  493

seq1  ATCCGCGCTGACTTAGGGCTGGAACAATCTGTGGTTGTTCTCGGAGCGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCGCTGACTTAGGGCTGGAACAATCTGTGGTTGTTCTCGGAGCGGT  543

seq1  GTGCCGGTGGCCCGCTTTTGACCCTCTTTTCTTCTCGGGGGAAGAGGCCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGGTGGCCCGCTTTTGACCCTCTTTTCTTCTCGGGGGAAGAGGCCC  593

seq1  AATTCAGAGATCAGGACAATAGTGTTATCTTAATAGCTCCCAACAAAAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAGATCAGGACAATAGTGTTATCTTAATAGCTCCCAACAAAAAC  643

seq1  GCTTAAAGAAATACTTTTTAAAGGTGACCTAGAATTAACTGCTTAGAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGAAATACTTTTTAAAGGTGACCTAGAATTAACTGCTTAGAGTT  693

seq1  GGCCATGCTCTCTGTTACTGTGATATCCTAACTTTCTCTGATGGCAGACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGCTCTCTGTTACTGTGATATCCTAACTTTCTCTGATGGCAGACA  743

seq1  GACCTGGCTCTGGGTCCCAAGCTGGCTACCCAATATGTGGATTAATTTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGCTCTGGGTCCCAAGCTGGCTACCCAATATGTGGATTAATTTGA  793

seq1  GAGTAATGCTCAACATGTAAGACTGTGCTTTCCTCATAAATTCAGACAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATGCTCAACATGTAAGACTGTGCTTTCCTCATAAATTCAGACAAC  843

seq1  AACTGGTGGAGTGGCTCTAAGTATTCAAAATCAGTCGGTGTGCCTGGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTGGAGTGGCTCTAAGTATTCAAAATCAGTCGGTGTGCCTGGTAT  893

seq1  CCAACTCGGTGTCTTAGAAACCTATATCCTTCCAGCTCTTCAGTGTACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCGGTGTCTTAGAAACCTATATCCTTCCAGCTCTTCAGTGTACCT  943

seq1  AGAACTATAAGCATACATATAAATAATTTCAATATCTCCACCTACTTGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATAAGCATACATATAAATAATTTCAATATCTCCACCTACTTGGA  993

seq1  GAGCTGAGTCAGGAGAATTCC  1020
      |||||||||||||||||||||
seq2  GAGCTGAGTCAGGAGAATTCC  1014

seq1: chr13_62802658_62803196
seq2: B6Ng01-057G23.g_68_606

seq1  GAATTCTTTCATGCCCGAGAAGAGAATTGGCACATTTGAAAGCTTTATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATGCCCGAGAAGAGAATTGGCACATTTGAAAGCTTTATCA  50

seq1  CACTGACAAATACTTTCATTTGTATGAATTAATGGTACTATTGTCTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGACAAATACTTTCATTTGTATGAATTAATGGTACTATTGTCTAAAT  100

seq1  ATAAAGAGGAATCAGATCTTAAGATTTTTATCACTTTGCTTACATTCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAGGAATCAGATCTTAAGATTTTTATCACTTTGCTTACATTCCTG  150

seq1  CAGTTACCCCTTCATTATGGGTTGGCTTTCATCTTCAAGGATACCTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACCCCTTCATTATGGGTTGGCTTTCATCTTCAAGGATACCTGACA  200

seq1  AAGAATGAATGAGCATGTATTACATGGTTCAGCTTTATATATTCTTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAATGAGCATGTATTACATGGTTCAGCTTTATATATTCTTTTTC  250

seq1  TATTAGAGGGTTTTCCCATATTTGAACAAAAGTGGGAGAACTCAGCCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGGGTTTTCCCATATTTGAACAAAAGTGGGAGAACTCAGCCCTT  300

seq1  TACCACATTAAGTGTATTCCAATTTTTCCTGGACTGTGGGTCAGACTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACATTAAGTGTATTCCAATTTTTCCTGGACTGTGGGTCAGACTATA  350

seq1  TTTGCAAAGTGAACCAGGAGAAAGAGAAGCATTTCCACATTCCTAGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAGTGAACCAGGAGAAAGAGAAGCATTTCCACATTCCTAGGACT  400

seq1  CAAGAGAATTTTCTACAGAATGAGGTTGTTGATAAATTGCCAATGAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAATTTTCTACAGAATGAGGTTGTTGATAAATTGCCAATGAAGTT  450

seq1  GAAAAACCAATGATATGTGACTTGTATCACATTCAAAAAGTCTACCTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACCAATGATATGTGACTTGTATCACATTCAAAAAGTCTACCTTAA  500

seq1  CTGCAAGCAAATGCATGTCTTCTAAGTGTTCTGGGAGAC  539
      |||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGCAAATGCATGTCTTCTAAGTGTTCTGGGAGAC  539