BAC Information

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BAC

Clone NameB6Ng01-057K16
Chromosome13 (Build37)
Map Location 102,536,977 - 102,717,458
singlet/doubletdoublet
Overlap genePik3r1
Upstream geneCenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983
Downstream geneCd180, Mast4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057K16.bB6Ng01-057K16.g
ACCDH879470DH879471
length606613
definitionDH879470|Mus musculus domesticus DNA, BAC clone: B6Ng01-057K16, 5' end.DH879471|Mus musculus domesticus DNA, BAC clone: B6Ng01-057K16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,716,853 - 102,717,458)(102,536,977 - 102,537,589)
sequence
gaattctttatgacaatgggaattaatcaggaggaaggaataggtttaaa
gaagatatgtagatttcaggctgagtgtgtgctaaaaataaaaatatgga
ttcaaaaaaaggaaggaacaaaaaaaggagagagagagatcgaggcaggc
agacacacacacacatgaagagagagacagagacacagatagagacagac
agagagacagagaaacagacacacacagagggggtacaggaaatggtaaa
tggcttcattccgtgagttgaccagagccatggcagcaatgggagcagaa
gcctggcacacatggctggtgcaactgccacttcactgtggctcactgag
gctgggaacgacaagtacacagggaactcgtcagtgcagaagttggctaa
gagtcatgtcaagaggtgaggacggttgtcacaggcagctttggcagaga
tggagagggggaacagaggatctatttgaccttagggactatttggcatt
tgtgtgctaaggccaatgaaactaaaactcaggggatcccctgacattga
accatgttagtttttgtttgttttttttgggtttttgttgttgttgttgt
tgttgt
gaattcccctgaatacagtgccggcacacagcattcaacatgtcacagcc
actccgctcacacccttgcgttattgtgcgcgaaagctggttactaaaat
gcatttctgtacatgcgtgcctggtcagagcgtttctattctctttgtct
cgtgatctgccgggcagtttctgcctttgggaaggaagtagcttgcagac
aattcccccagatattttagctctggcttgcacgcgggccggttctccct
ggccggcagcttagtgctgggcaggtccttccagggtcgccccgcgttag
gaaaagctggatttccgggcggtgccaggatcccactcattatgcctcca
gcaacctgcccaagcccggcgggcgccagacgccgagctagagccccagc
caccgaccgccccgaggagcacttcccccaccccggaagaggagggaggc
aaacttcggagggcgggggctgggggcgagctccggggaccaccatggcc
cagcctggccggagaccccggctggggctccgggcctggagggtacgccg
cgctaacgcaaaggcagcgatccaggcactctcctcgcgcgctcccggct
tcgaaaagttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_102716853_102717458
seq2: B6Ng01-057K16.b_48_653 (reverse)

seq1  ACAACAACAACAACAACAACAAAAACCCAAAAAAAACAAACAAAAACTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAACAACAACAACAAAAACCCAAAAAAAACAAACAAAAACTAA  50

seq1  CATGGTTCAATGTCAGGGGATCCCCTGAGTTTTAGTTTCATTGGCCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTCAATGTCAGGGGATCCCCTGAGTTTTAGTTTCATTGGCCTTAG  100

seq1  CACACAAATGCCAAATAGTCCCTAAGGTCAAATAGATCCTCTGTTCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAATGCCAAATAGTCCCTAAGGTCAAATAGATCCTCTGTTCCCCC  150

seq1  TCTCCATCTCTGCCAAAGCTGCCTGTGACAACCGTCCTCACCTCTTGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATCTCTGCCAAAGCTGCCTGTGACAACCGTCCTCACCTCTTGACA  200

seq1  TGACTCTTAGCCAACTTCTGCACTGACGAGTTCCCTGTGTACTTGTCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTTAGCCAACTTCTGCACTGACGAGTTCCCTGTGTACTTGTCGTT  250

seq1  CCCAGCCTCAGTGAGCCACAGTGAAGTGGCAGTTGCACCAGCCATGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTCAGTGAGCCACAGTGAAGTGGCAGTTGCACCAGCCATGTGTG  300

seq1  CCAGGCTTCTGCTCCCATTGCTGCCATGGCTCTGGTCAACTCACGGAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTTCTGCTCCCATTGCTGCCATGGCTCTGGTCAACTCACGGAATG  350

seq1  AAGCCATTTACCATTTCCTGTACCCCCTCTGTGTGTGTCTGTTTCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATTTACCATTTCCTGTACCCCCTCTGTGTGTGTCTGTTTCTCTGT  400

seq1  CTCTCTGTCTGTCTCTATCTGTGTCTCTGTCTCTCTCTTCATGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCTGTCTCTATCTGTGTCTCTGTCTCTCTCTTCATGTGTGTGT  450

seq1  GTGTCTGCCTGCCTCGATCTCTCTCTCTCCTTTTTTTGTTCCTTCCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCCTGCCTCGATCTCTCTCTCTCCTTTTTTTGTTCCTTCCTTTT  500

seq1  TTTGAATCCATATTTTTATTTTTAGCACACACTCAGCCTGAAATCTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATCCATATTTTTATTTTTAGCACACACTCAGCCTGAAATCTACAT  550

seq1  ATCTTCTTTAAACCTATTCCTTCCTCCTGATTAATTCCCATTGTCATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTTTAAACCTATTCCTTCCTCCTGATTAATTCCCATTGTCATAAA  600

seq1  GAATTC  606
      ||||||
seq2  GAATTC  606

seq1: chr13_102536977_102537589
seq2: B6Ng01-057K16.g_69_681

seq1  GAATTCCCCTGAATACAGTGCCGGCACACAGCATTCAACATGTCACAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTGAATACAGTGCCGGCACACAGCATTCAACATGTCACAGCC  50

seq1  ACTCCGCTCACACCCTTGCGTTATTGTGCGCGAAAGCTGGTTACTAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGCTCACACCCTTGCGTTATTGTGCGCGAAAGCTGGTTACTAAAAT  100

seq1  GCATTTCTGTACATGCGTGCCTGGTCAGAGCGTTTCTATTCTCTTTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTGTACATGCGTGCCTGGTCAGAGCGTTTCTATTCTCTTTGTCT  150

seq1  CGTGATCTGCCGGGCAGTTTCTGCCTTTGGGAAGGAAGTAGCTTGCAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATCTGCCGGGCAGTTTCTGCCTTTGGGAAGGAAGTAGCTTGCAGAC  200

seq1  AATTCCCCCAGATATTTTAGCTCTGGCTTGCACGCGGGCCGGTTCTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCCCCAGATATTTTAGCTCTGGCTTGCACGCGGGCCGGTTCTCCCT  250

seq1  GGCCGGCAGCTTAGTGCTGGGCAGGTCCTTCCAGGGTCGCCCCGCGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGCAGCTTAGTGCTGGGCAGGTCCTTCCAGGGTCGCCCCGCGTTAG  300

seq1  GAAAAGCTGGATTTCCGGGCGGTGCCAGGATCCCACTCATTATGCCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCTGGATTTCCGGGCGGTGCCAGGATCCCACTCATTATGCCTCCA  350

seq1  GCAACCTGCCCAAGCCCGGCGGGCGCCAGACGCCGAGCTAGAGCCCCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCTGCCCAAGCCCGGCGGGCGCCAGACGCCGAGCTAGAGCCCCAGC  400

seq1  CACCGACCGCCCCGAGGAGCACTTCCCCCACCCCGGAAGAGGAGGGAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGACCGCCCCGAGGAGCACTTCCCCCACCCCGGAAGAGGAGGGAGGC  450

seq1  AAACTTCGGAGGGCGGGGGCTGGGGGCGAGCTCCGGGGACCACCATGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCGGAGGGCGGGGGCTGGGGGCGAGCTCCGGGGACCACCATGGCC  500

seq1  CAGCCTGGCCGGAGACCCCGGCTGGGGCTCCGGGCCTGGAGGGTACGCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGGCCGGAGACCCCGGCTGGGGCTCCGGGCCTGGAGGGTACGCCG  550

seq1  CGCTAACGCAAAGGCAGCGATCCAGGCACTCTCCTCGCGCGCTCCCGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAACGCAAAGGCAGCGATCCAGGCACTCTCCTCGCGCGCTCCCGGCT  600

seq1  TCGGAAAGCTGCA  613
      ||| |||| ||||
seq2  TCGAAAAGTTGCA  613