BAC Information

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BAC

Clone NameB6Ng01-058N19
Chromosome13 (Build37)
Map Location 26,998,141 - 27,147,953
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957
Downstream genePrl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058N19.bB6Ng01-058N19.g
ACCDH880322DH880323
length8591,075
definitionDH880322|Mus musculus domesticus DNA, BAC clone: B6Ng01-058N19, 5' end.DH880323|Mus musculus domesticus DNA, BAC clone: B6Ng01-058N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,998,141 - 26,998,969)(27,146,863 - 27,147,953)
sequence
gaattccatcctacaattaataatagtttccccagttaggttcccttgta
gaaagctaaatattcacttacaaatggttatcaattggagatagttgatg
ggatagggatggtgtcatggagttgttctcttctccttttagctatagag
ccccatctgttccacaccactgcaaaagctgtgcatgctgcctcagtccc
tttaatttcatctgtgtatcaattctgttgatatagaaagcctcatttac
ttggaatcctctatccctttgggtcttatactctttttccctcttcttct
gcagctctcccaaacactgaggtaaatggtttcccggaaatatcccattt
aatattggatatcccatggtctctcattatttgcatgttgtttggctctg
ggtttgcatatttgttccaatcttctgctggagaatgtgtcttccatgat
tgtcaaacaaggccccgggacatttgtatagcagaatgtcattagaagtc
attttttctgctccattttttccagaatcattttaagaccaaacttctag
gaagtctgttcatgaattccgctcttattatcaatacctgtattgtttaa
ctcctaattaccaaattaattaattaacaaataaatgcagttgataatca
tagatgacactgttcatgtaatgcaaaattgaaaaaccgtatggtctgtg
aattataattaagtgcatcaagggaataggagaactatgtgagaagatag
agagcggtaagcattttaggtcatcgtgacatctagggaccccatctgcc
cattggttgatatcatcattgaaggaacactaattgacatgagtataact
atttactat
gaattccttagttttcctcctatttgccttggcataatcaatgtcaggat
tccaacatgaagaagaaactattcaccctcacagatcaatttatctaaat
gtaggtttggtatctttcctgcatgcatgctttttatctgtatattatct
tggacaaaacagtctcaatttttatagatataaagatacacaaacctttg
cagcacttgccttcttgtccagaatcttaagcctaaagaaatctgccata
aaatggacactgataacataatcttaaaatgtaattgtgccataactttt
ttggatacctgaaaaagaaataaagtgaatggtgccgattgatttgctgg
attgcacagtggcatatttctctataaaggttagagcgtgctctctgctg
cttctcagtagcgcacttactgtgaatggaggtcttgaagggtctaaatc
actcaagatcatattttatgtcaagattcataactgtcccttttttggta
agcactcatatgtttctatttttcacttaatatatgtatatgaggttttg
caaatatttctttttaccaaactgtggtagtaaataagaggattaaagaa
caagaaatttacgtgtgctttcatttcacattgttatttccttgcagttt
ggatttttatggttcatggtaaaattgagttggcaatttctgtcaaagac
ataattggttaacaccttgtattttattcgtattttatctgttctacaat
tttgaatacttttgcttttcttcaatttagaatataatatatacttacaa
agcatcacgttatctgaaaatgtcaattatatgatggaagatctgaagga
gggaaatgaatttgttacttaaaaaattctcataattaagttataaatat
atctaataggtattttaacttatatttgtaattattgcttacaacaaaat
ataatgataattaataaggtatattgttatgaattaaattgtaaacacta
cattttacaatttattctaggtgtccaattaaatagaattatttcagtat
aaaagctagataaatcatgaagtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26998141_26998969
seq2: B6Ng01-058N19.b_77_899

seq1  CCAGTTAGGTTCCCTTGTAGAAAGCTAAATATTCACTTACAAATGGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTAGGTTCCCTTGTAGAAAGCTAAATATTCACTTACAAATGGTTAT  50

seq1  CAATTGGAGATAGTTGATGGGATAGGGATGGTGTCATGGAGTTGTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGGAGATAGTTGATGGGATAGGGATGGTGTCATGGAGTTGTTCTCT  100

seq1  TCTCCTTTTAGCTATAGAGCCCCATCTGTTCCACACCACTGCAAAAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTTTAGCTATAGAGCCCCATCTGTTCCACACCACTGCAAAAGCTG  150

seq1  TGCATGCTGCCTCAGTCCCTTTAATTTCATCTGTGTATCAATTCTGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCTGCCTCAGTCCCTTTAATTTCATCTGTGTATCAATTCTGTTGA  200

seq1  TATAGAAAGCCTCATTTACTTGGTATCCTCTATCCCTTTGGGTCTTATAC  250
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TATAGAAAGCCTCATTTACTTGGAATCCTCTATCCCTTTGGGTCTTATAC  250

seq1  TCTTTTTCCCTCTTCTTCTGCAGCTCTCCCAAACACTGAGGTAAATGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCCCTCTTCTTCTGCAGCTCTCCCAAACACTGAGGTAAATGGTT  300

seq1  TCCCGGAAATATCCCATTTAATATTGGATATCCCATGGTCTCTCATTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGAAATATCCCATTTAATATTGGATATCCCATGGTCTCTCATTATT  350

seq1  TGCATGTTGTTTGGCTCTGGGTTTGCATATTTGTTCCAATCTTCTGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTGTTTGGCTCTGGGTTTGCATATTTGTTCCAATCTTCTGCTGG  400

seq1  AGAATGTGTCTTCCATGATTGTCAAACAAGGCCCCGGTACATTTGTATAG  450
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAATGTGTCTTCCATGATTGTCAAACAAGGCCCCGGGACATTTGTATAG  450

seq1  CAGAATGTCATTAGAAGTCATTTTTTCTGCTCCATTTTTTCCAGAATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTCATTAGAAGTCATTTTTTCTGCTCCATTTTTTCCAGAATCAT  500

seq1  TTTAAGACCAAACTTCTAGGAAGTCTGTTCATGAATTCAGCTCTTATTAT  550
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTAAGACCAAACTTCTAGGAAGTCTGTTCATGAATTCCGCTCTTATTAT  550

seq1  CAATACCTGTATTGTTTAACTCCTAATTAACAAATTAATTAATTAACAAA  600
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CAATACCTGTATTGTTTAACTCCTAATTACCAAATTAATTAATTAACAAA  600

seq1  TTAATGCAGTTAATAATCATAATTGATACTGTTCATGTAATGCAAAATTG  650
      | ||||||||| |||||||||  ||| |||||||||||||||||||||||
seq2  TAAATGCAGTTGATAATCATAGATGACACTGTTCATGTAATGCAAAATTG  650

seq1  AAAAACAGTATGGTATGTGAATTATAATTAAGTGCATCAAGGGAATAGGA  700
      |||||| ||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAAACCGTATGGTCTGTGAATTATAATTAAGTGCATCAAGGGAATAGGA  700

seq1  GAACTATGTGAGAAGATAGAAAGTGGTAAGCATTTTAGGTCAGCGTGTCC  750
      |||||||||||||||||||| || |||||||||||||||||| ||||  |
seq2  GAACTATGTGAGAAGATAGAGAGCGGTAAGCATTTTAGGTCATCGTG-AC  749

seq1  ATCAAGGGACACCATCTGCACATTTGGTTGTATATCATCAGTTGATGGAA  800
      ||| |||||| |||||||| || ||||||| ||||||||| |||| ||||
seq2  ATCTAGGGACCCCATCTGCCCA-TTGGTTG-ATATCATCA-TTGAAGGAA  796

seq1  CATTTAATTGACATGAGTATATACTATTT  829
      ||  ||||||||||||||||| |||||||
seq2  CA-CTAATTGACATGAGTATA-ACTATTT  823

seq1: chr13_27146863_27147953
seq2: B6Ng01-058N19.g_68_1142 (reverse)

seq1  AGACTTTCATGATATTATCTAGCCTATTATACTGAAAATAATATCTATTT  50
      |||| |||||||| |||||||| || |||||||| ||||||| |||||||
seq2  AGAC-TTCATGAT-TTATCTAG-CTTTTATACTG-AAATAAT-TCTATTT  45

seq1  AATTTGACCACTTAGAATAAATTGTAAAATGTAGTTGTTTAACAATTTTA  100
      |||| || ||| |||||||||||||||||||||| ||||| |||||||  
seq2  AATTGGA-CACCTAGAATAAATTGTAAAATGTAG-TGTTT-ACAATTT--  90

seq1  AATTCATAAACAATATAACCTTAATAATTATCATTATAATTTTTGTTGTT  150
      ||||||| |||||||| |||||| ||||||||||||||  |||||||| |
seq2  AATTCAT-AACAATAT-ACCTTATTAATTATCATTATA--TTTTGTTG-T  135

seq1  AAGCAATTAATTACAAATATAAGTTAAAATACCTATTAGATATATTTATT  200
      |||||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGCAA-TAATTACAAATATAAGTTAAAATACCTATTAGATATATTTA-T  183

seq1  AACTTAATTATGAGAATTTTTTAAGTAAC-AATTCATTTCCCTCCTTCAG  249
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AACTTAATTATGAGAATTTTTTAAGTAACAAATTCATTTCCCTCCTTCAG  233

seq1  ATCTTCCATCATATAATTGACATTTTCAGATAACGTGATGCTTTGTAAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCATCATATAATTGACATTTTCAGATAACGTGATGCTTTGTAAGT  283

seq1  ATATATTATATTCTAAATTGAAGAAAAGCAAAAGTATTCAAAATTGTAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATATTCTAAATTGAAGAAAAGCAAAAGTATTCAAAATTGTAGA  333

seq1  ACAGATAAAATACGAATAAAATACAAGGTGTTAACCAATTATGTCTTTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATAAAATACGAATAAAATACAAGGTGTTAACCAATTATGTCTTTGA  383

seq1  CAGAAATTGCCAACTCAATTTTACCATGAACCATAAAAATCCAAACTGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATTGCCAACTCAATTTTACCATGAACCATAAAAATCCAAACTGCA  433

seq1  AGGAAATAACAATGTGAAATGAAAGCACACGTAAATTTCTTGTTCTTTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAACAATGTGAAATGAAAGCACACGTAAATTTCTTGTTCTTTAA  483

seq1  TCCTCTTATTTACTACCACAGTTTGGTAAAAAGAAATATTTGCAAAACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTATTTACTACCACAGTTTGGTAAAAAGAAATATTTGCAAAACCT  533

seq1  CATATACATATATTAAGTGAAAAATAGAAACATATGAGTGCTTACCAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACATATATTAAGTGAAAAATAGAAACATATGAGTGCTTACCAAAA  583

seq1  AAGGGACAGTTATGAATCTTGACATAAAATATGATCTTGAGTGATTTAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACAGTTATGAATCTTGACATAAAATATGATCTTGAGTGATTTAGA  633

seq1  CCCTTCAAGACCTCCATTCACAGTAAGTGCGCTACTGAGAAGCAGCAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAAGACCTCCATTCACAGTAAGTGCGCTACTGAGAAGCAGCAGAG  683

seq1  AGCACGCTCTAACCTTTATAGAGAAATATGCCACTGTGCAATCCAGCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGCTCTAACCTTTATAGAGAAATATGCCACTGTGCAATCCAGCAAA  733

seq1  TCAATCGGCACCATTCACTTTATTTCTTTTTCAGGTATCCAAAAAAGTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCGGCACCATTCACTTTATTTCTTTTTCAGGTATCCAAAAAAGTTA  783

seq1  TGGCACAATTACATTTTAAGATTATGTTATCAGTGTCCATTTTATGGCAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACAATTACATTTTAAGATTATGTTATCAGTGTCCATTTTATGGCAG  833

seq1  ATTTCTTTAGGCTTAAGATTCTGGACAAGAAGGCAAGTGCTGCAAAGGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTAGGCTTAAGATTCTGGACAAGAAGGCAAGTGCTGCAAAGGTT  883

seq1  TGTGTATCTTTATATCTATAAAAATTGAGACTGTTTTGTCCAAGATAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATCTTTATATCTATAAAAATTGAGACTGTTTTGTCCAAGATAATA  933

seq1  TACAGATAAAAAGCATGCATGCAGGAAAGATACCAAACCTACATTTAGAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATAAAAAGCATGCATGCAGGAAAGATACCAAACCTACATTTAGAT  983

seq1  AAATTGATCTGTGAGGGTGAATAGTTTCTTCTTCATGTTGGAATCCTGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATCTGTGAGGGTGAATAGTTTCTTCTTCATGTTGGAATCCTGAC  1033

seq1  ATTGATTATGCCAAGGCAAATAGGAGGAAAACTAAGGAATTC  1091
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTATGCCAAGGCAAATAGGAGGAAAACTAAGGAATTC  1075