BAC Information

Click to search

BAC

Clone NameB6Ng01-059D16
Chromosome13 (Build37)
Map Location 28,809,338 - 28,926,829
singlet/doubletdoublet
Overlap genenone
Upstream genePrl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1
Downstream geneLOC626683, 2610307P16Rik, Sox4, LOC100041135, Cdkal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059D16.bB6Ng01-059D16.g
ACCDH880571DH880572
length1,132569
definitionDH880571|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D16, 5' end.DH880572|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,925,684 - 28,926,829)(28,809,338 - 28,809,911)
sequence
gaattcttttggtgtgtgcatgcatgtatttgtgtgtaaatcagcattaa
tgatattttagagtaattcactattaacttgctaaatttaaatagtatat
attattagttttagggagatgtattaaaaagacacaacttaaatatttct
atatggcacagaatagcatttctggataagctttttcagtttttgttttt
ctaatacactgttctctaaattccttacaaatattagcagtaatacagga
aacctaaccaagatgttggagttctgataggctggctcaaggtctggctc
atagcttttgttctcagttttcttttctttaagcttttaagttaaaattt
ggtaaatatgcaaaataataggtttcattttcacacacacacacacacac
acacacacacacacacacacacacacacgtagttgcatcttgctcctatc
ccctcacatgccacttccattcaccccctttcttggtcatccctttgttc
ttcccaaatagttccttctttgcattcatgccatatgtgttatgcttaaa
tatagactacatatatgagcgaaagtgaggcattttatctttctccatta
gccatccctttgttctcctccttcctccctttagccattttcctcccatt
ttgtagtgacctttctactttcatctctctttccttctctctctccctcc
ctccccccccaccccccacacccacacacatacacaaagcaaactagatt
ctgcacatgtgcacatgtgagaatggacccccttcatctttctgcgtctg
gtatatttctgttacacaatgatctccagttgtgtaaatgctacagtttc
attttgggttctttacaattcaataaaattgcactgcacatatatatcca
ccagtcagcatcagtgcgggttcctgatcttgcctattgtgaatagtctt
gcataaacatgaagatgcaagtgtcccagtgaagattcctttgaatatat
accaaggagtggtacagcagatcataaggtagctagctctgtttgtagcc
atgtggaagagcatactgatgtccaagggctgtacagtgacattcccatc
atgtcagtgtcaggttaagctctattctaaca
ttacagagacatcattcatacatttatcttgcatattgagcttcttctaa
gggtgctcatgggggttggggggaggggaagctgcccactgatgacttga
tctccacctccttcctcaaagcaagatccctgatgcaattatgtgccatc
ctgatttgggacagagtgggcggcagcaacttgcatttttagctcttaag
aggagctcaaggccatatgtagccaaagtgtagagattatatactaaata
tagactagggagaatctatgtggtataattgtggatttctaagttttgat
ctccaagccacaggaacttagggatctattcagagcagtagactgcttag
caaatgcttcatgcccgcactcccaccctaatcatttctttccttcaaat
agattgggttctagcccagactactctcaattcttatcctttctctccat
atttctctattaatgctgtctatctggctatttgttcgttttctcccaca
aacgcttcatctgagggtgtaggcagtctcagtgtttgccaagtgcgcaa
aagatttaggtgtgataat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_28925684_28926829
seq2: B6Ng01-059D16.b_46_1177 (reverse)

seq1  TGTTAGGAATGTAGAGCTTTAACACCTGACACTGACATTGATGGGGAATG  50
      |||||| |   ||||||||    |||||||||||||| |||| |||||||
seq2  TGTTAGAA---TAGAGCTT---AACCTGACACTGACA-TGAT-GGGAATG  42

seq1  TCAACTGGTACAGCCACTGTGGACATCAGTATGGCTCTTCCACATGGCTA  100
      || ||| |||||||| || ||||||||||||| |||||||||||||||||
seq2  TC-ACT-GTACAGCC-CT-TGGACATCAGTAT-GCTCTTCCACATGGCTA  87

seq1  CAAACAGAGCTAGCTACCTTATGATCTGGCTGTACCACTCC-TGGTATAT  149
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  CAAACAGAGCTAGCTACCTTATGATCT-GCTGTACCACTCCTTGGTATAT  136

seq1  ATTCAAAGGAATCTTCCACTGGGACACTTGCATCTTCATGTTTATTGCAA  199
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  ATTCAAAGGAATCTT-CACTGGGACACTTGCATCTTCATGTTTA-TGCAA  184

seq1  GACTATTCACAATAGGCAAGATCAGGAACCCGCACTGATGCTGACTGGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATTCACAATAGGCAAGATCAGGAACCCGCACTGATGCTGACTGGTG  234

seq1  GATATATATGTGCAGTGCAATTTTATTGAATTGTAAAGAA-CCAAAATGA  298
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GATATATATGTGCAGTGCAATTTTATTGAATTGTAAAGAACCCAAAATGA  284

seq1  AACTGTAGCATTTACACAACTGGAGATCATTGTGTAACAGAAATATACCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAGCATTTACACAACTGGAGATCATTGTGTAACAGAAATATACCA  334

seq1  GACGCAGAAAGATGAAGGGGGTCCATTCTCACATGTGCACATGTGCAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCAGAAAGATGAAGGGGGTCCATTCTCACATGTGCACATGTGCAGAA  384

seq1  TCTAGTTTGCTTTGTGTATGTGTGTGGGTGTGGGGGGTGGGGGGGGAGGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTTGCTTTGTGTATGTGTGTGGGTGTGGGGGGTGGGGGGGGAGGG  434

seq1  AGGGAGAGAGAGAAGGAAAGAGAGATGAAAGTAGAAAGGTCACTACAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGAGAGAAGGAAAGAGAGATGAAAGTAGAAAGGTCACTACAAAA  484

seq1  TGGGAGGAAAATGGCTAAAGGGAGGAAGGAGGAGAACAAAGGGATGGCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGAAAATGGCTAAAGGGAGGAAGGAGGAGAACAAAGGGATGGCTA  534

seq1  ATGGAGAAAGATAAAATGCCTCACTTTCGCTCATATATGTAGTCTATATT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAAGATAAAATGCCTCACTTTCGCTCATATATGTAGTCTATATT  584

seq1  TAAGCATAACACATATGGCATGAATGCAAAGAAGGAACTATTTGGGAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATAACACATATGGCATGAATGCAAAGAAGGAACTATTTGGGAAGA  634

seq1  ACAAAGGGATGACCAAGAAAGGGGGTGAATGGAAGTGGCATGTGAGGGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGATGACCAAGAAAGGGGGTGAATGGAAGTGGCATGTGAGGGGA  684

seq1  TAGGAGCAAGATGCAACTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCAAGATGCAACTACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  734

seq1  GTGTGTGTGTGTGTGTGAAAATGAAACCTATTATTTTGCATATTTACCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGAAAATGAAACCTATTATTTTGCATATTTACCAA  784

seq1  ATTTTAACTTAAAAGCTTAAAGAAAAGAAAACTGAGAACAAAAGCTATGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACTTAAAAGCTTAAAGAAAAGAAAACTGAGAACAAAAGCTATGA  834

seq1  GCCAGACCTTGAGCCAGCCTATCAGAACTCCAACATCTTGGTTAGGTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACCTTGAGCCAGCCTATCAGAACTCCAACATCTTGGTTAGGTTTC  884

seq1  CTGTATTACTGCTAATATTTGTAAGGAATTTAGAGAACAGTGTATTAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTACTGCTAATATTTGTAAGGAATTTAGAGAACAGTGTATTAGAA  934

seq1  AAACAAAAACTGAAAAAGCTTATCCAGAAATGCTATTCTGTGCCATATAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAACTGAAAAAGCTTATCCAGAAATGCTATTCTGTGCCATATAG  984

seq1  AAATATTTAAGTTGTGTCTTTTTAATACATCTCCCTAAAACTAATAATAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTAAGTTGTGTCTTTTTAATACATCTCCCTAAAACTAATAATAT  1034

seq1  ATACTATTTAAATTTAGCAAGTTAATAGTGAATTACTCTAAAATATCATT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTTAAATTTAGCAAGTTAATAGTGAATTACTCTAAAATATCATT  1084

seq1  AATGCTGATTTACACACAAATACATGCATGCACACACCAAAAGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGATTTACACACAAATACATGCATGCACACACCAAAAGAATTC  1132

seq1: chr13_28809338_28809911
seq2: B6Ng01-059D16.g_68_642

seq1  GAATTCTTACAGAGACATCATTCATACATTTATCTTGCATATTGAGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAGAGACATCATTCATACATTTATCTTGCATATTGAGCTTC  50

seq1  TTCTAAGGGTGCTCATGGGGGTTGGGGGGAGGGGAAGCTGCCCACTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGGGTGCTCATGGGGGTTGGGGGGAGGGGAAGCTGCCCACTGATG  100

seq1  ACTTGATCTCCACCTCCTTCCTCAAAGCAAGATCCCTGATGCAATTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATCTCCACCTCCTTCCTCAAAGCAAGATCCCTGATGCAATTATGT  150

seq1  GCCATCCTGATTTGGGACAGAGTGGGCGGCAGCAACTTGCATTTTTAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCCTGATTTGGGACAGAGTGGGCGGCAGCAACTTGCATTTTTAGCT  200

seq1  CTTAAGAGGAGCTCAAGGCCATATGTAGCCAAAGTGTAGAGATTATATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAGGAGCTCAAGGCCATATGTAGCCAAAGTGTAGAGATTATATAC  250

seq1  TAAATATAGACTAGGGAGAATCTATGTGGTATAATTGTGGATTTCTAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAGACTAGGGAGAATCTATGTGGTATAATTGTGGATTTCTAAGT  300

seq1  TTTGATCTCCAAGCCACAGGAACTTAGGGATCTATTCAGAGCAGTAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTCCAAGCCACAGGAACTTAGGGATCTATTCAGAGCAGTAGACT  350

seq1  GCTTAGCAAATGCTTCATGCCCGCACTCCCACCCTAATCATTTCTTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCAAATGCTTCATGCCCGCACTCCCACCCTAATCATTTCTTTCCT  400

seq1  TCAAATAGATTGGGTTCTAGCCCAGACTACTCTCAATTCTTATCCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGATTGGGTTCTAGCCCAGACTACTCTCAATTCTTATCCTTTCT  450

seq1  CTCCATATTTCTCTATTAATGCTGTCTATCTGGCTATTTGTTCGTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATATTTCTCTATTAATGCTGTCTATCTGGCTATTTGTTCGTTTTCT  500

seq1  CCCACAAACGCTTCATCTGAGGGTGTAGGCAGTCTCAGTGTTTGCCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAACGCTTCATCTGAGGGTGTAGGCAGTCTCAGTGTTTGCCAAGT  550

seq1  GCGC-AAAGATTTAGGTGTGATAAT  574
      |||| ||||||||||||||||||||
seq2  GCGCAAAAGATTTAGGTGTGATAAT  575