BAC Information

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BAC

Clone NameB6Ng01-059P09
Chromosome13 (Build37)
Map Location 48,714,201 - 48,842,170
singlet/doubletdoublet
Overlap geneAW456874, Barx1
Upstream gene4931429P17Rik, Id4, LOC667351, Zfp169, A830005F24Rik
Downstream genePhf2, EG667415, BC010304, C030044B11Rik, Wnk2, Ninj1, 1110007C09Rik, Susd3, Fgd3, Bicd2, Ippk, Cenpp, Tes3-ps, Ecm2, Aspn, Omd, Ogn, Nol8, Iars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059P09.bB6Ng01-059P09.g
ACCDH881085DH881086
length6361,047
definitionDH881085|Mus musculus domesticus DNA, BAC clone: B6Ng01-059P09, 5' end.DH881086|Mus musculus domesticus DNA, BAC clone: B6Ng01-059P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,841,535 - 48,842,170)(48,714,201 - 48,715,257)
sequence
gaattcatgatgtcacccagacctgccagacagttgccgatgcatgaggc
tggtgaggtttcaaactgtcccctctcctccatgttctccccccaaggcc
ccctccccccaccggtggccctttccgcctgtggccagcactggtggttg
tgtttaagtgagtaatttggcccctgtttaaggagaggaagtaataatag
cggccataattgtccaaattacggctgcccctctgagtttgacatttgcc
taatgacggcagacggaaacctgacctgaggcccagggcgggtggacagt
gatgactgctgggagtgtccccaaagccagccaagcctctgctggccata
gccctggaggatgagcctctcagcccagacatttgcaaaccagagcccag
agagggagccactgcccagggtcttaagtggggctagagacaagccacct
tactatttggtaagctttcagcttcaaccagactgtgcactgtccattcc
aaacttgaagtatagaccccccaatccttcagcactgcttttgtttgccc
ctgatggttgttggtacatgacatctaggtgatgttgtgtttataaaaga
aataaaggagaggagtgtgtttggtggaggtgtagt
gaattcataaggaaccagtgtcccaaagaagaagatgaatagaagccaat
cagaaggaattcaaaatcccattctaaccctacatatctcctgtagttac
ctccaatgaccaatctaacttttttcctttccttgcttttctgctttctc
tacctataaagccaacctcttccactggcttgagctataggaccaccttt
aaataggatgctttcagattcaagaatttctagcagagccaactacatct
ggaaaacattagaaggaaagtacagtgctgattatgtctctgattaaatc
tcccttcgggggtgccgccaacagaaccccgctgtctcgggactaggaaa
gtagaaatggggcaggaattaatggaagaaaaagagaagagtcttttatt
cctgggtcagcagttaggtttctgaatttgtcctgtgcagtaatttagta
acaggagtcttcaagtcccaactctagcaacaaaacagctgtctaaacag
aactggaggcacgggggtaaagaacatgcttattgtcatggagcatcata
ttaaaaagtatgtcacaaaatataatacacaggctggcaagatggctagt
ggtataaaagtggttgccccctcaactgactgacttaagttccatccctg
gatcccactgtggaaggagagaaacaactccaaaaggtagttctctaacc
taacacgggccatgacatgcatgtacctacacttacacacacacacacca
cagtaacaatacagtttacacacatacacatcatatagagtatacttccg
ctctacatataacacacagataaaagactggaagaataaacaacaaaaat
taagaatggattataggggctggagaggtggctcagtggttaagagcact
gactgcttcttctagagtcttgagttcaattcccagcaaccacatggtgg
ctcacaaccatctgtaatggatcagagcctcttctgtgtgtctgagacgc
tacgtgtactcataatgtaaaataaaataaatcttaatataatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_48841535_48842170
seq2: B6Ng01-059P09.b_51_686 (reverse)

seq1  ACTACACCTCCACCAAACACACTCCTCTCCTTTATTTCTTTTATAAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACACCTCCACCAAACACACTCCTCTCCTTTATTTCTTTTATAAACAC  50

seq1  AACATCACCTAGATGTCATGTACCAACAACCATCAGGGGCAAACAAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCACCTAGATGTCATGTACCAACAACCATCAGGGGCAAACAAAAGC  100

seq1  AGTGCTGAAGGATTGGGGGGTCTATACTTCAAGTTTGGAATGGACAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGAAGGATTGGGGGGTCTATACTTCAAGTTTGGAATGGACAGTGC  150

seq1  ACAGTCTGGTTGAAGCTGAAAGCTTACCAAATAGTAAGGTGGCTTGTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTGGTTGAAGCTGAAAGCTTACCAAATAGTAAGGTGGCTTGTCTC  200

seq1  TAGCCCCACTTAAGACCCTGGGCAGTGGCTCCCTCTCTGGGCTCTGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCACTTAAGACCCTGGGCAGTGGCTCCCTCTCTGGGCTCTGGTTT  250

seq1  GCAAATGTCTGGGCTGAGAGGCTCATCCTCCAGGGCTATGGCCAGCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGTCTGGGCTGAGAGGCTCATCCTCCAGGGCTATGGCCAGCAGAG  300

seq1  GCTTGGCTGGCTTTGGGGACACTCCCAGCAGTCATCACTGTCCACCCGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCTGGCTTTGGGGACACTCCCAGCAGTCATCACTGTCCACCCGCC  350

seq1  CTGGGCCTCAGGTCAGGTTTCCGTCTGCCGTCATTAGGCAAATGTCAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTCAGGTCAGGTTTCCGTCTGCCGTCATTAGGCAAATGTCAAAC  400

seq1  TCAGAGGGGCAGCCGTAATTTGGACAATTATGGCCGCTATTATTACTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGGGCAGCCGTAATTTGGACAATTATGGCCGCTATTATTACTTCC  450

seq1  TCTCCTTAAACAGGGGCCAAATTACTCACTTAAACACAACCACCAGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTAAACAGGGGCCAAATTACTCACTTAAACACAACCACCAGTGCT  500

seq1  GGCCACAGGCGGAAAGGGCCACCGGTGGGGGGAGGGGGCCTTGGGGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGGCGGAAAGGGCCACCGGTGGGGGGAGGGGGCCTTGGGGGGAG  550

seq1  AACATGGAGGAGAGGGGACAGTTTGAAACCTCACCAGCCTCATGCATCGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGAGGAGAGGGGACAGTTTGAAACCTCACCAGCCTCATGCATCGG  600

seq1  CAACTGTCTGGCAGGTCTGGGTGACATCATGAATTC  636
      ||||||||||||||||||||||||||||||||||||
seq2  CAACTGTCTGGCAGGTCTGGGTGACATCATGAATTC  636

seq1: chr13_48714201_48715257
seq2: B6Ng01-059P09.g_67_1113

seq1  GAATTCATAAGGAACCAGTGTCCCAAAGAAGAAGATGAATAGAAGCCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAAGGAACCAGTGTCCCAAAGAAGAAGATGAATAGAAGCCAAT  50

seq1  CAGAAGGAATTCAAAATCCCATTCTAACCCTACATATCTCCTGTAGTTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAATTCAAAATCCCATTCTAACCCTACATATCTCCTGTAGTTAC  100

seq1  CTCCAATGACCAATCTAACTTTTTTCCTTTCCTTGCTTTTCTGCTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAATGACCAATCTAACTTTTTTCCTTTCCTTGCTTTTCTGCTTTCTC  150

seq1  TACCTATAAAGCCAACCTCTTCCACTGGCTTGAGCTATAGGACCACCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATAAAGCCAACCTCTTCCACTGGCTTGAGCTATAGGACCACCTTT  200

seq1  AAATAGGATGCTTTCAGATTCAAGAATTTCTAGCAGAGCCAACTACATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGATGCTTTCAGATTCAAGAATTTCTAGCAGAGCCAACTACATCT  250

seq1  GGAAAACATTAGAAGGAAAGTACAGTGCTGATTATGTCTCTGATTAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACATTAGAAGGAAAGTACAGTGCTGATTATGTCTCTGATTAAATC  300

seq1  TCCCTTCGGGGGTGCCGCCAACAGAACCCCGCTGTCTCGGGACTAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCGGGGGTGCCGCCAACAGAACCCCGCTGTCTCGGGACTAGGAAA  350

seq1  GTAGAAATGGGGCAGGAATTAATGGAAGAAAAAGAGAAGAGTCTTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATGGGGCAGGAATTAATGGAAGAAAAAGAGAAGAGTCTTTTATT  400

seq1  CCTGGGTCAGCAGTTAGGTTTCTGAATTTGTCCTGTGCAGTAATTTAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTCAGCAGTTAGGTTTCTGAATTTGTCCTGTGCAGTAATTTAGTA  450

seq1  ACAGGAGTCTTCAAGTCCCAACTCTAGCAACAAAACAGCTGTCTAAACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTCTTCAAGTCCCAACTCTAGCAACAAAACAGCTGTCTAAACAG  500

seq1  AACTGGAGGCACGGGGGTAAAGAACATGCTTATTGTCATGGAGCATCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGGCACGGGGGTAAAGAACATGCTTATTGTCATGGAGCATCATA  550

seq1  TTAAAAAGTATGTCACAAAATATAATACACAGGCTGGCAAGATGGCTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGTATGTCACAAAATATAATACACAGGCTGGCAAGATGGCTAGT  600

seq1  GGTATAAAAGTGGTTGCCCCCTCAACTGACTGACTTAAGTTCCATCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAAAAGTGGTTGCCCCCTCAACTGACTGACTTAAGTTCCATCCCTG  650

seq1  GATCCCACTGTGGAAGGAGAGAAACAACTCCAAAAGGTAGTTCTCTAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCACTGTGGAAGGAGAGAAACAACTCCAAAAGGTAGTTCTCTAACC  700

seq1  TAACACGGGCCATGACATGCATGTACCTACACTTACACACACACACACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACGGGCCATGACATGCATGTACCTACACTTACACACACACACACCA  750

seq1  CAGTAACAATACAGTTTACACACATACACATCATATAGAGTATACTTCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACAATACAGTTTACACACATACACATCATATAGAGTATACTTCCG  800

seq1  CTCTACATATAACACACAGATAAAAGACTGGAAGAATAAACAACAAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATATAACACACAGATAAAAGACTGGAAGAATAAACAACAAAAAT  850

seq1  TAAGAATGGATTATAGGGGCTGGAGAGGTGGCTCAGTGGTTAAGAGCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATGGATTATAGGGGCTGGAGAGGTGGCTCAGTGGTTAAGAGCACT  900

seq1  GACTGC-TCTTCTAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTG  949
      |||||| ||||||||| ||| |||||||||||||||||||||||||||||
seq2  GACTGCTTCTTCTAGA-GTCTTGAGTTCAATTCCCAGCAACCACATGGTG  949

seq1  GCTCACAACCATCTGTAATGGGATCAGAGGCCCTCTTCTGGTGTGTCTGA  999
      ||||||||||||||||||| |||||||||  |||||||| ||||||||| 
seq2  GCTCACAACCATCTGTAAT-GGATCAGAG--CCTCTTCT-GTGTGTCTG-  994

seq1  AGACAGCTACAGTGTACTCACATATGTAATATAAAATAAATCTTAAATAT  1049
      |||| ||||| ||||||||| | |||||| |||||||||||||| |||||
seq2  AGAC-GCTAC-GTGTACTCATA-ATGTAAAATAAAATAAATCTT-AATAT  1040

seq1  ATATGTAT  1057
      | ||||||
seq2  A-ATGTAT  1047