BAC Information

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BAC

Clone NameB6Ng01-060I01
Chromosome13 (Build37)
Map Location 115,296,415 - 115,435,735
singlet/doubletdoublet
Overlap gene4930467J12Rik
Upstream geneSnag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4, LOC100040958, Fst
Downstream geneMocs2, Itga2, LOC100040975, Itga1, Pelo, LOC100041023, LOC547402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060I01.bB6Ng01-060I01.g
ACCDH881459DH881460
length9041,003
definitionDH881459|Mus musculus domesticus DNA, BAC clone: B6Ng01-060I01, 5' end.DH881460|Mus musculus domesticus DNA, BAC clone: B6Ng01-060I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,434,831 - 115,435,735)(115,296,415 - 115,297,420)
sequence
gaattctagcacagtccatttagtcaaattcctctcagtgtttctgtgaa
ctacccctccttccagtttgctgtggggtgggaaatatctccaactgagg
gtttgcaggagagatgtgagttcagagagttatatggtcaggtgttgtgg
ctttaggaaaaagaagttgttgatcctaacatctgcactggggaagaagg
ttctagtttttgttaccagctatgctgtcagctttctgttgccataatac
ccagggcaataaacttaataagatggaaggtttatattgtctcttagtct
ttccatggttgctgccacatttcttttgtatagaagtgcatcccagcagg
agtgtaaggtagaggaagctacccacctcctggtgcctgagaagacaaag
agagattagggtcccacagtgctctttgaggaatcactcttcatgggtta
aagtctccactgggttccatttctttaagatgtcaccacctgccaatatc
actatgaagcttttaacacatgggccattggaggtactccgggtctaagc
atctgcctcatggaggaactgagggaaggggacagaaggacagaagttca
gattgaactttgtgcttctaagttccttacagtttcctcagctcaaagta
ctcagtattccacagaaccatacatacttgggggcatcatggtctaagat
ccaacattagtcatttttatcattaaatgtagaaagttaaacaggaaata
gacattctgaatttggcattaacaaactgtatttctcaaaaattattcct
aaattaaacctgtttataacatcaaaaccattattgaccatcctctaatt
caaggaaagtttctccctctctctctctctctctctctctctctctctct
ctct
gaattcacttaggcaaatattctgcttgtgaagggctcagagtttataag
gaggtttcgggagtgcggatggagaactatggggcacagggagcttactt
ggtgggagaggtttgactgatgactggagacctgcctggatgacgaaggg
tcgcgttccctagaatgcaagttcgtctcatgaccgactggctttgtaat
cgagataggaaactgaagaagtctttaaacatggatagtttttattagca
tccaaagaagacgtttagagcggaattatgggagcacggggatgggaaca
ttctcatcacactgactgctcacatccaaggaggagaactttatgagtca
cactggaatatctgcatactgacaatatggcgcccaagtctcactcatta
tttctctttctgtacctgtgtatggtcatgtagaggagtgaaaggcagca
tgtcttcttggacttttcttcacttgggattttatgctcctgtggtagtc
ctttaatagactggattgtaatgacagcctttcccacatttttttttctt
tttcagaaagacttattcagcccactaaattatcttttactgctcattgc
tctgcggttccctgttttttttttttttttttttttgtttttgttttgtt
tttgtttttgtttttttttgttggtgttttgtttttttacttctatagga
aggtcttgtagatgagctaaaattttctcaaatatgcctggccttgtttt
tactgatgtatctaatatgaccaaaaggatgaaagcaccttcttaggtcc
cacgtgagtgtgggactcaatgctactttcacatcttctttgctctaaaa
aatgcttcgtagacaccatccctccacacacctctcaaaccttttaaccc
tagttaaaggcatccctgcatccttgaacatttctttgttctcccagcct
ttgctgatgcttccagggttattcttgcttcaactctactgcatcttctt
tga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_115434831_115435735
seq2: B6Ng01-060I01.b_42_945 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAAACTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAAACTTTC  50

seq1  CTTTGAATTAGAGGATGGTCAATAATGGTTTTGATGTTATAAACAGGTTT  100
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TTGAATTAGAGGATGGTCAATAATGGTTTTGATGTTATAAACAGGTTT  99

seq1  AATTTAGGAATAATTTTTGAGAAATACAGTTTGTTAATGCCAAATTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGGAATAATTTTTGAGAAATACAGTTTGTTAATGCCAAATTCAGA  149

seq1  ATGTCTATTTCCTGTTTAACTTTCTACATTTAATGATAAAAATGACTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTATTTCCTGTTTAACTTTCTACATTTAATGATAAAAATGACTAAT  199

seq1  GTTGGATCTTAGACCATGATGCCCCCAAGTATGTATGGTTCTGTGGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATCTTAGACCATGATGCCCCCAAGTATGTATGGTTCTGTGGAATA  249

seq1  CTGAGTACTTTGAGCTGAGGAAACTGTAAGGAACTTAGAAGCACAAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTACTTTGAGCTGAGGAAACTGTAAGGAACTTAGAAGCACAAAGTT  299

seq1  CAATCTGAACTTCTGTCCTTCTGTCCCCTTCCCTCAGTTCCTCCATGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGAACTTCTGTCCTTCTGTCCCCTTCCCTCAGTTCCTCCATGAGG  349

seq1  CAGATGCTTAGACCCGGAGTACCTCCAATGGCCCATGTGTTAAAAGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTTAGACCCGGAGTACCTCCAATGGCCCATGTGTTAAAAGCTTC  399

seq1  ATAGTGATATTGGCAGGTGGTGACATCTTAAAGAAATGGAACCCAGTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGATATTGGCAGGTGGTGACATCTTAAAGAAATGGAACCCAGTGGA  449

seq1  GACTTTAACCCATGAAGAGTGATTCCTCAAAGAGCACTGTGGGACCCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAACCCATGAAGAGTGATTCCTCAAAGAGCACTGTGGGACCCTAA  499

seq1  TCTCTCTTTGTCTTCTCAGGCACCAGGAGGTGGGTAGCTTCCTCTACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTTGTCTTCTCAGGCACCAGGAGGTGGGTAGCTTCCTCTACCTT  549

seq1  ACACTCCTGCTGGGATGCACTTCTATACAAAAGAAATGTGGCAGCAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTGCTGGGATGCACTTCTATACAAAAGAAATGTGGCAGCAACCA  599

seq1  TGGAAAGACTAAGAGACAATATAAACCTTCCATCTTATTAAGTTTATTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGACTAAGAGACAATATAAACCTTCCATCTTATTAAGTTTATTGC  649

seq1  CCTGGGTATTATGGCAACAGAAAGCTGACAGCATAGCTGGTAACAAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTATTATGGCAACAGAAAGCTGACAGCATAGCTGGTAACAAAAAC  699

seq1  TAGAACCTTCTTCCCCAGTGCAGATGTTAGGATCAACAACTTCTTTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCTTCTTCCCCAGTGCAGATGTTAGGATCAACAACTTCTTTTTCC  749

seq1  TAAAGCCACAACACCTGACCATATAACTCTCTGAACTCACATCTCTCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCCACAACACCTGACCATATAACTCTCTGAACTCACATCTCTCCTG  799

seq1  CAAACCCTCAGTTGGAGATATTTCCCACCCCACAGCAAACTGGAAGGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCTCAGTTGGAGATATTTCCCACCCCACAGCAAACTGGAAGGAGG  849

seq1  GGTAGTTCACAGAAACACTGAGAGGAATTTGACTAAATGGACTGTGCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTCACAGAAACACTGAGAGGAATTTGACTAAATGGACTGTGCTAG  899

seq1  AATTC  905
      |||||
seq2  AATTC  904

seq1: chr13_115296415_115297420
seq2: B6Ng01-060I01.g_68_1070

seq1  GAATTCACTTAGGCAAATATTCTGCTTGTGAAGGGCTCAGAGTTTATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTAGGCAAATATTCTGCTTGTGAAGGGCTCAGAGTTTATAAG  50

seq1  GAGGTTTCGGGAGTGCGGATGGAGAACTATGGGGCACAGGGAGCTTACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTCGGGAGTGCGGATGGAGAACTATGGGGCACAGGGAGCTTACTT  100

seq1  GGTGGGAGAGGTTTGACTGATGACTGGAGACCTGCCTGGATGACGAAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGAGGTTTGACTGATGACTGGAGACCTGCCTGGATGACGAAGGG  150

seq1  TCGCGTTCCCTAGAATGCAAGTTCGTCTCATGACCGACTGGCTTTGTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCGTTCCCTAGAATGCAAGTTCGTCTCATGACCGACTGGCTTTGTAAT  200

seq1  CGAGATAGGAAACTGAAGAAGTCTTTAAACATGGATAGTTTTTATTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATAGGAAACTGAAGAAGTCTTTAAACATGGATAGTTTTTATTAGCA  250

seq1  TCCAAAGAAGACGTTTAGAGCGGAATTATGGGAGCACGGGGATGGGAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGAAGACGTTTAGAGCGGAATTATGGGAGCACGGGGATGGGAACA  300

seq1  TTCTCATCACACTGACTGCTCACATCCAAGGAGGAGAACTTTATGAGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATCACACTGACTGCTCACATCCAAGGAGGAGAACTTTATGAGTCA  350

seq1  CACTGGAATATCTGCATACTGACAATATGGCGCCCAAGTCTCACTCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAATATCTGCATACTGACAATATGGCGCCCAAGTCTCACTCATTA  400

seq1  TTTCTCTTTCTGTACCTGTGTATGGTCATGTAGAGGAGTGAAAGGCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTCTGTACCTGTGTATGGTCATGTAGAGGAGTGAAAGGCAGCA  450

seq1  TGTCTTCTTGGACTTTTCTTCACTTGGGATTTTATGCTCCTGTGGTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCTTGGACTTTTCTTCACTTGGGATTTTATGCTCCTGTGGTAGTC  500

seq1  CTTTAATAGACTGGATTGTAATGACAGCCTTTCCCACATTTTTTTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATAGACTGGATTGTAATGACAGCCTTTCCCACATTTTTTTTTCTT  550

seq1  TTTCAGAAAGACTTATTCAGCCCACTAAATTATCTTTTACTGCTCATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAAAGACTTATTCAGCCCACTAAATTATCTTTTACTGCTCATTGC  600

seq1  TCTGCGGTTCCCTG-TTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTTGTT  649
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTGCGGTTCCCTGTTTTTTTTTTTTTTTTTTTTTTGTTTTTGTTTTGTT  650

seq1  TTTGTTTTTGTTTTTTTTTGTTGTTGTTTTGTTTTTTTACTTCTATAGGA  699
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTTGTTTTTGTTTTTTTTTGTTGGTGTTTTGTTTTTTTACTTCTATAGGA  700

seq1  AGGTCTTGTAGATGAGCTAAAATTTTCTCAAATATGCCTGGCCTTGTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTGTAGATGAGCTAAAATTTTCTCAAATATGCCTGGCCTTGTTTT  750

seq1  TACTGATGTATCTAATATGACCAAAAGGATG-AAGCACCTTCTTA-GTCC  797
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  TACTGATGTATCTAATATGACCAAAAGGATGAAAGCACCTTCTTAGGTCC  800

seq1  CACGTGAGTGTGGTACTCAATGCTACTTTCACATCTTCTTTGCTCT-AAA  846
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  CACGTGAGTGTGGGACTCAATGCTACTTTCACATCTTCTTTGCTCTAAAA  850

seq1  AATGCTTCGTAGACACCATCCCTCCACACACCTCTCAAACCTTTTAACCC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCGTAGACACCATCCCTCCACACACCTCTCAAACCTTTTAACCC  900

seq1  TAGTTAAAGGCATCCCTGCATCCTTGGAACATTTCTTTGTTCCTCCCAGC  946
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  TAGTTAAAGGCATCCCTGCATCCTT-GAACATTTCTTTGTT-CTCCCAGC  948

seq1  CTTTGCTGATTGCTTTCCAGTATTTATCTTGTCTTTCCAACTCTACTGCA  996
      ||||||||| ||| ||||||  ||  ||||| |||  |||||||||||||
seq2  CTTTGCTGA-TGC-TTCCAGGGTTATTCTTG-CTT--CAACTCTACTGCA  993

seq1  TCTTCTTTGA  1006
      ||||||||||
seq2  TCTTCTTTGA  1003