BAC Information

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BAC

Clone NameB6Ng01-060L21
Chromosome13 (Build37)
Map Location 63,384,111 - 63,500,261
singlet/doubletdoublet
Overlap gene2010111I01Rik, Fancc
Upstream geneLOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524
Downstream genePtch1, C030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060L21.bB6Ng01-060L21.g
ACCDH881633DH881634
length1,0991,056
definitionDH881633|Mus musculus domesticus DNA, BAC clone: B6Ng01-060L21, 5' end.DH881634|Mus musculus domesticus DNA, BAC clone: B6Ng01-060L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,384,111 - 63,385,211)(63,499,204 - 63,500,261)
sequence
gaattccaggtttgagaaaaatataaaatcataaatatttaatgttttta
atcataagaaaaagttcaaagaaaaatggtcttggacacagagctctaaa
atacagagaacataagaaaccttaactgagttttctatgccctgcagtca
gcagctactagcacctggagcattaggacactggaaacttagccctcctg
agcagggtgtgcacaggtatgaggtgcatgggggaccaaggtgctcgata
ctcattacagtctatttttgaacttctattttagaccagttggcttatgt
gaaatgttatagtgtcttacactgacaaacaattccttagtagctcaccg
ggaaggtggactttgttacacatttccaagtccatagacttaggagcagt
ggaaagaagttcttagggagacactgttaccctttaccacccatgtatca
aatttgtttgtttctgctcctagcccttttgtttatcagagactccaaat
gccagacttatttttaattagtgtttgaaagaccttgctatttataggca
aaggattgtgttttgactggttggatcccactggagtcaggctcctgcca
gcctgcactggctgggtgggagggtcagagcaggtgctgaacacctgtcc
cttgatgccaggaagccatgaggctccaatccccttctccctcttcctac
tggcatgtcacacatcctgtcttaccttacacagccaggtacagttactg
tgtgttccttaaacctttgagaaggaggtagatgtctcccttttctggaa
atatcaaaaactatatctcactgcccaaaggcagatgacttgattctgct
gtgatccttggtgcccagatggactaaatgtatcctggtttcctttacac
actcttgatctgactgtagcatttacacttaacatctacacactgagaaa
gaaatggtgtactcgagtcagctcactcataggaaacttgcatttattgt
ctgtcagctcaatgggtaaacaaggtagcctcagccgagggctatgaagg
ggtgatacaggttgaagaggagacacacaaggccaacatttctaagcca
gaattctttgaaagttatgagtctggaaactaatgtgtgttaggcaagac
agcacctcctggtactttatttaagctgacagggaaaaatgaatgcccct
caaaatggcctggtgagtttactcagatttattaattactgagaaagcat
aagcttaatgcttgtttttaaagccctaaaaattatgaagggttgggtgc
tctcagtgaatgtagagatctccgtagttagtcctgtccagtgcctttca
taacaaagccattggaagcactattagcttacaggaggctgaaaggtgaa
ctctggatgtctttgagaatactgcaggggctgggtatgtctacctcccc
tctcttccaccacagggtctgcattgctgtggctatcctgtctgctaaca
gcttcagtttctaaagttaaggtttttttctaattgtgctctgagtctct
acctggaacagatttggctaccagaaacatagacagatagtagttatttt
gctttaaagagcttgaaattactgatgtttaaaatgtgaaattagaaaca
tgttgaagagcccagcactttcagctctttccatccttcttgtttggctt
taaaaactgctgctgttgcagaaagagagttgaccacacaagagctggag
tgagctgagtctacaagtagaaaagcctccgctgagcttgtttcttgagg
ttttcctaagcatgttcttagggttttttttcccctatttgataaagtct
atttattttagttttcttttctgcagatgaaagccaaaaaattgtaatat
ggtgcttatgttgtctgatgaacaaagaacctcggacttctgcagagtca
ggacttaactcgtggatccgggtaagagagaaaatctcttctgctggctc
tgctttgacttcaggtggtgatttaaagatacccccactcccctttcttt
ctcttattggctcattctgtctgtcatgttttaggcagtgatctcactta
tgggtgtgactccttgggggttgaccacagggagtcgtatatctgaatat
ctgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_63384111_63385211
seq2: B6Ng01-060L21.b_47_1145

seq1  GAATTCCAGGTTTGAGAAAAATATAAAATCATAAATATTTAATGTTTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTTGAGAAAAATATAAAATCATAAATATTTAATGTTTTTA  50

seq1  ATCATAAGAAAAAGTTCAAAGAAAAATGGTCTTGGACACAGAGCTCTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAGAAAAAGTTCAAAGAAAAATGGTCTTGGACACAGAGCTCTAAA  100

seq1  ATACAGAGAACATAAGAAACCTTAACTGAGTTTTCTATGCCCTGCAGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAGAACATAAGAAACCTTAACTGAGTTTTCTATGCCCTGCAGTCA  150

seq1  GCAGCTACTAGCACCTGGAGCATTAGGACACTGGAAACTTAGCCCTCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTACTAGCACCTGGAGCATTAGGACACTGGAAACTTAGCCCTCCTG  200

seq1  AGCAGGGTGTGCACAGGTATGAGGTGCATGGGGGACCAAGGTGCTCGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGTGTGCACAGGTATGAGGTGCATGGGGGACCAAGGTGCTCGATA  250

seq1  CTCATTACAGTCTATTTTTGAACTTCTATTTTAGACCAGTTGGCTTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTACAGTCTATTTTTGAACTTCTATTTTAGACCAGTTGGCTTATGT  300

seq1  GAAATGTTATAGTGTCTTACACTGACAAACAATTCCTTAGTAGCTCACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTTATAGTGTCTTACACTGACAAACAATTCCTTAGTAGCTCACCG  350

seq1  GGAAGGTGGACTTTGTTACACATTTCCAAGTCCATAGACTTAGGAGCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGGACTTTGTTACACATTTCCAAGTCCATAGACTTAGGAGCAGT  400

seq1  GGAAAGAAGTTCTTAGGGAGACACTGTTACCCTTTACCACCCATGTATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAAGTTCTTAGGGAGACACTGTTACCCTTTACCACCCATGTATCA  450

seq1  AATTTGTTTGTTTCTGCTCCTAGCCCTTTTGTTTATCAGAGACTCCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTTGTTTCTGCTCCTAGCCCTTTTGTTTATCAGAGACTCCAAAT  500

seq1  GCCAGACTTATTTTTAATTAGTGTTTGAAAGACCTTGCTATTTATAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACTTATTTTTAATTAGTGTTTGAAAGACCTTGCTATTTATAGGCA  550

seq1  AAGGATTGTGTTTTGACTGGTTGGATCCCACTGGAGTCAGGCTCCTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGTGTTTTGACTGGTTGGATCCCACTGGAGTCAGGCTCCTGCCA  600

seq1  GCCTGCACTGGCTGGGTGGGAGGGTCAGAGCAGGTGCTGAACACCTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCACTGGCTGGGTGGGAGGGTCAGAGCAGGTGCTGAACACCTGTCC  650

seq1  CTTGATGCCAGGAAGCCATGAGGCTCCAATCCCCTTCTCCCTCTTCCTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGCCAGGAAGCCATGAGGCTCCAATCCCCTTCTCCCTCTTCCTAC  700

seq1  TGGCATGTCACACATCCTGTCTTACCTTACACAGCCAGGTACAGTTACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGTCACACATCCTGTCTTACCTTACACAGCCAGGTACAGTTACTG  750

seq1  TGTGTTCCTTAAACCTTTGAGAAGGAGGTAGATGTCTCCCTTTTCTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCTTAAACCTTTGAGAAGGAGGTAGATGTCTCCCTTTTCTGGAA  800

seq1  ATATCAAAAACTATATCTCACTGCCCAAAGGCAGATGACTTGATTCTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAAACTATATCTCACTGCCCAAAGGCAGATGACTTGATTCTGCT  850

seq1  GTGATCCTTGGTGCCCAGATGGACTAAATGTATCCTGGTTTCCTTTACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCCTTGGTGCCCAGATGGACTAAATGTATCCTGGTTTCCTTTACAC  900

seq1  ACTCTTGATCTGACTGTAGCATTTACACTTAACATCTACACACTGAGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTGATCTGACTGTAGCATTTACACTTAACATCTACACACTGAGAAA  950

seq1  GAAATGGTGTACTCGAGTCAGGCTCACCCATAGGAAACTTGCATTTATTT  1000
      |||||||||||||||||||| |||||| ||||||||||||||||||| ||
seq2  GAAATGGTGTACTCGAGTCA-GCTCACTCATAGGAAACTTGCATTTA-TT  998

seq1  GTCTGTCAGCTCATTGGGTAAACAAGGTAGCCTCAGCCGAGGGCTATGAA  1050
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCAGCTCAATGGGTAAACAAGGTAGCCTCAGCCGAGGGCTATGAA  1048

seq1  GGGGTGATACAGGGTGAAGAGGAGACACACAGGGCAAACATCTCTAAGCC  1100
      ||||||||||||| ||||||||||||||||| ||| ||||| ||||||||
seq2  GGGGTGATACAGGTTGAAGAGGAGACACACAAGGCCAACATTTCTAAGCC  1098

seq1  A  1101
      |
seq2  A  1099

seq1: chr13_63499204_63500261
seq2: B6Ng01-060L21.g_70_1125 (reverse)

seq1  ATTCATGATA-TCAGATATACGACT-CCTGTGTTCAACCCCCAAGGGGTC  48
      ||||| |||| |||||||||||||| |||||| ||||||||||||| |||
seq2  ATTCA-GATATTCAGATATACGACTCCCTGTGGTCAACCCCCAAGGAGTC  49

seq1  ACAACCCATAAGTTGAGAACCACTGCCTTAAAACATGACAGACAGAATTG  98
      || ||||||||| |||| | ||||||| ||||||||||||||||||| ||
seq2  AC-ACCCATAAG-TGAG-ATCACTGCC-TAAAACATGACAGACAGAA-TG  94

seq1  AGCCAATAAAGGGAAAG-AAGGGGAGT-GGGGTATCTTTAAATCACCACC  146
      ||||||| ||| ||||| ||||||||| ||||||||||||||||||||||
seq2  AGCCAAT-AAGAGAAAGAAAGGGGAGTGGGGGTATCTTTAAATCACCACC  143

seq1  TGAAGTCAAAGCAGAGCCAGCAG-AGGGATTTTCTCTCTTACCCGGATCC  195
      ||||||||||||||||||||||| || |||||||||||||||||||||||
seq2  TGAAGTCAAAGCAGAGCCAGCAGAAGAGATTTTCTCTCTTACCCGGATCC  193

seq1  ACGAGTTAAGTCCTGACTCTGCAGAAGTCCGAGGTTCTTTGTTCATCAGA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTTAAGTCCTGACTCTGCAGAAGTCCGAGGTTCTTTGTTCATCAGA  243

seq1  CAACATAAGCACCATATTACAATTTTTTGGCTTTCATCTGCAGAAAAGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATAAGCACCATATTACAATTTTTTGGCTTTCATCTGCAGAAAAGAA  293

seq1  AACTAAAATGAATAGACTTTATCAAATAGGGGAAAAAAAACCCTAAGAAC  345
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAATAAATAGACTTTATCAAATAGGGGAAAAAAAACCCTAAGAAC  343

seq1  ATGCTTAGGAAAACCTCAAGAAACAAGCTCAGCGGAGGCTTTTCTACTTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTAGGAAAACCTCAAGAAACAAGCTCAGCGGAGGCTTTTCTACTTG  393

seq1  TGGGCTCAGCTCACTCCAGCTCTTGTGTGGTCAACTCTCTTTCTGCAACA  445
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTCAGCTCACTCCAGCTCTTGTGTGGTCAACTCTCTTTCTGCAACA  443

seq1  GCAGCAGTTTTTAAAGCCAAACAAGAAGGATGGAAAGAGCTGAAAGTGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTTTTTAAAGCCAAACAAGAAGGATGGAAAGAGCTGAAAGTGCT  493

seq1  GGGCTCTTCAACATGTTTCTAATTTCACATTTTAAACATCAGTAATTTCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTTCAACATGTTTCTAATTTCACATTTTAAACATCAGTAATTTCA  543

seq1  AGCTCTTTAAAGCAAAATAACTACTATCTGTCTATGTTTCTGGTAGCCAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTAAAGCAAAATAACTACTATCTGTCTATGTTTCTGGTAGCCAA  593

seq1  ATCTGTTCCAGGTAGAGACTCAGAGCACAATTAGAAAAAAACCTTAACTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTCCAGGTAGAGACTCAGAGCACAATTAGAAAAAAACCTTAACTT  643

seq1  TAGAAACTGAAGCTGTTAGCAGACAGGATAGCCACAGCAATGCAGACCCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAACTGAAGCTGTTAGCAGACAGGATAGCCACAGCAATGCAGACCCT  693

seq1  GTGGTGGAAGAGAGGGGAGGTAGACATACCCAGCCCCTGCAGTATTCTCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGAAGAGAGGGGAGGTAGACATACCCAGCCCCTGCAGTATTCTCA  743

seq1  AAGACATCCAGAGTTCACCTTTCAGCCTCCTGTAAGCTAATAGTGCTTCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATCCAGAGTTCACCTTTCAGCCTCCTGTAAGCTAATAGTGCTTCC  793

seq1  AATGGCTTTGTTATGAAAGGCACTGGACAGGACTAACTACGGAGATCTCT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTTTGTTATGAAAGGCACTGGACAGGACTAACTACGGAGATCTCT  843

seq1  ACATTCACTGAGAGCACCCAACCCTTCATAATTTTTAGGGCTTTAAAAAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACTGAGAGCACCCAACCCTTCATAATTTTTAGGGCTTTAAAAAC  893

seq1  AAGCATTAAGCTTATGCTTTCTCAGTAATTAATAAATCTGAGTAAACTCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTAAGCTTATGCTTTCTCAGTAATTAATAAATCTGAGTAAACTCA  943

seq1  CCAGGCCATTTTGAGGGGCATTCATTTTTCCCTGTCAGCTTAAATAAAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCATTTTGAGGGGCATTCATTTTTCCCTGTCAGCTTAAATAAAGT  993

seq1  ACCAGGAGGTGCTGTCTTGCCTAACACACATTAGTTTCCAGACTCATAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGAGGTGCTGTCTTGCCTAACACACATTAGTTTCCAGACTCATAAC  1043

seq1  TTTCAAAGAATTC  1058
      |||||||||||||
seq2  TTTCAAAGAATTC  1056