BAC Information

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BAC

Clone NameB6Ng01-060N13
Chromosome11 (Build37)13 (Build37)
Map Location 76,866,633 - 76,867,84312,099,387 - 12,099,599
singlet/doubletsingletsinglet
Overlap geneCcdc55
Upstream geneVps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4
Downstream geneEfcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060N13.bB6Ng01-060N13.g
ACCDH881706DH881707
length1,193863
definitionDH881706|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N13, 5' end.DH881707|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(76,866,633 - 76,867,843)(12,099,387 - 12,099,599)
sequence
gaattcaaacttttaagagttggtacaactctttcatgtaaattcttaca
tgtaaatacaacaccaacaaaaacctctgaaaaggagctgtttagatggc
tcagcacatgacacctagcctgaccacccgaactaacatggcaggagaga
acacactccaggaagcgagcctctggcctccacacacatgccatatcata
ctcttgacccacaagttaaaaaataatgtaataatcttttaaactaagaa
gaaaaaaatagcttgaagaaagcagtatgaagtaatgaacggtggtgcac
acccactatcccagcacttgggaggatgagtcaggagcattgcaaactag
gccagcctgggtgacaggcaagaccttatttctaaatcacacacacacac
acacacacacacacacacacacacacacacacccacccacccctagggca
aaagtaatggctcagcaggcaaaagtgttctacctgtgtttaatccctgg
aacccatgccaaaacaaaaaaccagacctggtagcataaacctgtaattc
aacagtgttgtagcaggatgggaggcagagacaggcaaataggtcggaag
ccagagtgagcagcagagcggcagaaactagaaatacagatggaaagact
ccccagcatggtggctgggagaaccagcttctgccctcaccctgcagctg
caccccacccctgacatctttaaaggagaaataatcttacaaagtgtata
tattactagctcattctttaagtcctaacaatcttggcattattagactt
tttttaaaaagataattatactaaaatagtatatttaatcattacaaaca
gtattattccagtgaaataggtaaaagacaaatgtcaacataattcaggt
ccaaataaaaaggaaaggggggggaagatataaagtatcatcgatttcct
agctcatattttccttacaatttggtaatgcaatcatacctcatggtaaa
agcgagtgtgggaacagtgtcagggcggggagaaggtgcacctaggccag
cacttctcagctagttcctacgttcactgcaccgtatctcagtgcaaagg
aaagctgagcctcctatttataagaggaattgtcggagcctgctgaattc
gaaatgagtatagggagaaggctggacgcttgggtgctcctaa
gaattctttttttgtttgtttggttggttggtttttggggtttttgtttt
tgtttttgtttttgttttttgagatagggtttctctgtatagccctggct
gtcctggaactcgctctgtagcccaggctagcctcgaactcagaaatcct
cctgcctctgcctccccagtgctgggattaaaggcgtgtgccaccatgcc
cggcttggaattctaattccatataaaccaaaccatttagtattatccca
cagctgttgaatgctctgggttttttctcattcccccaacttggaagtta
aacatggatgagttcaaatgacctgacttcatggacactgattgattctt
ctgctgaatccatgttagtaataaacctaccaaaggaatttctcatatct
gatattatgaatttttttaaattatttgttcatctctcatacactacatc
cccaaatcagtttcccctcacttcactccaccccattttccaacagctac
ccaggaccatccctcctccattttccttcagaaaagagcaagccccccaa
gtgatatcagccaaacactgcataacatgttacaatctcagtttcgcttt
tctttatggttttcatgtctttgctctaaacacttaactgtgaatcctct
ctctctcttttccgtatgtttgtcctaatcaacttcaactatcaacttga
cacagtctagagtcatcaaaagagatatctactgaaggattgtctaaatc
agattttggcctgtggccatgtctgtgagagattgtcttgattaatgatg
aatggggagacgttcccacccatagtggggcagcaccatctctaggcatg
tgggcctgaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_76866633_76867843
seq2: B6Ng01-060N13.b_46_1238

seq1  GAATTCAAACTTTTAAGAGTTGGTACAACTCTTTCATGTAAATTCTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTTTTAAGAGTTGGTACAACTCTTTCATGTAAATTCTTACA  50

seq1  TGTAAATACAACACCAACAAAAACCTCTGAAAAGGAGCTGTTTAGATGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATACAACACCAACAAAAACCTCTGAAAAGGAGCTGTTTAGATGGC  100

seq1  TCAGCACATGACACCTAGCCTGACCACCCGAACTAACATGGCAGGAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACATGACACCTAGCCTGACCACCCGAACTAACATGGCAGGAGAGA  150

seq1  ACACACTCCAGGAAGCGAGCCTCTGGCCTCCACACACATGCCATATCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCCAGGAAGCGAGCCTCTGGCCTCCACACACATGCCATATCATA  200

seq1  CTCTTGACCCACAAGTTAAAAAATAATGTAATAATCTTTTAAACTAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGACCCACAAGTTAAAAAATAATGTAATAATCTTTTAAACTAAGAA  250

seq1  GAAAAAAATAGCTTGAAGAAAGCAGTATGAAGTAATGAACGGTGGTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATAGCTTGAAGAAAGCAGTATGAAGTAATGAACGGTGGTGCAC  300

seq1  ACCCACTATCCCAGCACTTGGGAGGATGAGTCAGGAGCATTGCAAACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTATCCCAGCACTTGGGAGGATGAGTCAGGAGCATTGCAAACTAG  350

seq1  GCCAGCCTGGGTGACAGGCAAGACCTTATTTCTAAATCACACACACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGGGTGACAGGCAAGACCTTATTTCTAAATCACACACACACAC  400

seq1  ACACACACACACACACACACACACACACACACCCACCCACCCCTAGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACCCACCCACCCCTAGGGCA  450

seq1  AAAGTAATGGCTCAGCAGGCAAAAGTGTTCTACCTGTGTTTAATCCCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAATGGCTCAGCAGGCAAAAGTGTTCTACCTGTGTTTAATCCCTGG  500

seq1  AACCCATGCCAAAACAAAAAACCAGACCTGGTAGCATAAACCTGTAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATGCCAAAACAAAAAACCAGACCTGGTAGCATAAACCTGTAATTC  550

seq1  AACAGTGTTGTAGCAGGATGGGAGGCAGAGACAGGCAAATAGGTCGGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGTTGTAGCAGGATGGGAGGCAGAGACAGGCAAATAGGTCGGAAG  600

seq1  CCAGAGTGAGCAGCAGAGCGGCAGAAACTAGAAATACAGATGGAAAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTGAGCAGCAGAGCGGCAGAAACTAGAAATACAGATGGAAAGACT  650

seq1  CCCCAGCATGGTGGCTGGGAGAACCAGCTTCTGCCCTCACCCTGCAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCATGGTGGCTGGGAGAACCAGCTTCTGCCCTCACCCTGCAGCTG  700

seq1  CACCCCACCCCTGACATCTTTAAAGGAGAAATAATCTTACAAAGTGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCACCCCTGACATCTTTAAAGGAGAAATAATCTTACAAAGTGTATA  750

seq1  TATTACTAGCTCATTCTTTAAGTCCTAACAATCTTGGCATTATTAGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTAGCTCATTCTTTAAGTCCTAACAATCTTGGCATTATTAGACTT  800

seq1  TTTTTAAAAAGATAATTATACTAAAATAGTATATTTAATCATTACAAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAAGATAATTATACTAAAATAGTATATTTAATCATTACAAACA  850

seq1  GTATTATTCCAGTGAAATAGGTAAAAGACAAATGTCAACATAATTCAGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATTCCAGTGAAATAGGTAAAAGACAAATGTCAACATAATTCAGGT  900

seq1  CCAAATAAAAAAGGAAAGGGGGGGGAAGATATTAAAGTATCATCGATTTC  950
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  CCAAAT-AAAAAGGAAAGGGGGGGGAAGATA-TAAAGTATCATCGATTTC  948

seq1  CTAGCTCATATTTTCCTTACAATTTGGTAAATGCAATCATACCTCATGGT  1000
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTAGCTCATATTTTCCTTACAATTTGGT-AATGCAATCATACCTCATGGT  997

seq1  AAGAGCGAGTGTGGGAACAGTGTCAGGGGCGGGGAGAAGGGTGCA-CTAG  1049
      || |||||||||||||||||||||| |||||||||||| |||||| ||||
seq2  AAAAGCGAGTGTGGGAACAGTGTCA-GGGCGGGGAGAA-GGTGCACCTAG  1045

seq1  GCCAGCAC-TCTCAGCTAAGTTCACTACGTTCACTGCACTGTA-CTCAGT  1097
      |||||||| |||||||| ||||| ||||||||||||||| ||| ||||||
seq2  GCCAGCACTTCTCAGCT-AGTTC-CTACGTTCACTGCACCGTATCTCAGT  1093

seq1  GC-AATGAAAGCTGAGCCTCACTATTATAAAGCAGGAGTCTGTCAGAAGC  1146
      || || |||||||||||||| ||||| || |  |||| | |||| | |||
seq2  GCAAAGGAAAGCTGAGCCTC-CTATT-TATAAGAGGAAT-TGTC-GGAGC  1139

seq1  ACTGCTGAGTTTTCAGATAATGGATGTATGGGAAGAAGTGCTTGAAACCG  1196
       ||||||| ||    || ||||   |||| || ||||| ||| ||   ||
seq2  -CTGCTGAATT---CGA-AATG--AGTATAGGGAGAAG-GCTGGA---CG  1178

seq1  CTGGGGTGCTCCTAA  1211
      || ||||||||||||
seq2  CTTGGGTGCTCCTAA  1193

seq1: chr13_12099387_12099599
seq2: B6Ng01-060N13.g_74_273

seq1  TTTTGTTTGTTTATTTGTTTGGTTGGTTGGGGGGGGTTGTTGTTTTTTTT  50
       ||| ||||||| |||| ||||||||||    |||||| |||||||| ||
seq2  -TTTTTTTGTTTGTTTGGTTGGTTGGTT-TTTGGGGTTTTTGTTTTTGTT  48

seq1  TGGGGGGGGGGGTTGTTTTTGTTTTTTGAGACAGGGTTTCTCTGTGTAGC  100
      |           ||||||||||||||||||| ||||||||||||| ||||
seq2  T-----------TTGTTTTTGTTTTTTGAGATAGGGTTTCTCTGTATAGC  87

seq1  CCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAG  150
      ||||||||||||||||||| || ||||| ||||||| |||||||||||||
seq2  CCTGGCTGTCCTGGAACTCGCTCTGTAGCCCAGGCTAGCCTCGAACTCAG  137

seq1  AAATCCGCCTGCCTCTGCATACCGAGTGCTGGGATTAAAGGCATTCGCCA  200
      |||||| ||||||||||| | || |||||||||||||||||| |  ||||
seq2  AAATCCTCCTGCCTCTGCCTCCCCAGTGCTGGGATTAAAGGCGTGTGCCA  187

seq1  CCATGCCCGGCTT  213
      |||||||||||||
seq2  CCATGCCCGGCTT  200