BAC Information

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BAC

Clone NameB6Ng01-060N22
Chromosome13 (Build37)
Map Location 57,448,165 - 57,579,880
singlet/doubletdoublet
Overlap geneSpock1
Upstream geneLOC100040926, AU042651, Il9, Fbxl21, Lect2, Tgfbi, Smad5, EG627415, Trpc7, LOC100040995
Downstream geneKlhl3, Hnrpa0, 5133401N09Rik, Ubqln1, LOC671252, Gkap1, Kif27, Hnrpk, Rmi1, LOC100041086
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060N22.bB6Ng01-060N22.g
ACCDH881722DH881723
length1,1301,068
definitionDH881722|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N22, 5' end.DH881723|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,448,165 - 57,449,302)(57,578,821 - 57,579,880)
sequence
gaattctcttgacccttaccagacacacaccagtgtaaggttatctactg
ggacatgttaaacctcccaggaattactaacctttcaaagaacagtgact
cccacctacagcagtcatcacctgtctctgcattaataactgcccattac
aaacaaaggcttctctgaccaagagaacagcacaaatctacagataaaaa
cagatcttagacagaggtctagtgacaaaatggtttaggaaaccaagggc
aggttctgagggcccatgaccttcctgctgtgggttttgactgtgtacgg
tgccaggaatgaatctccttttgcttctgcagaaaggtagaacattaaat
gtttgcttgtttgtttgtttgtttgttttagacagagtttctctgtgtag
ctctggctgtcctggagctaactctgtagaccaggctgtccttgaactca
gaaattcgcctgcctctgcctcccaagttctgggattaaaggcatgcacc
accactgtccagctgcaattatttttttattggatattgtttctctatgg
taggccacaaaacaaattaaaggtctaagataagaatttgttacattgtg
tcacaactagacaacacaattcaatgatcttgacatttaaacaggttaca
gaatatcttcaaaacacaaagacataaagtgtgagaactagtgttagaag
ggtggagagatggctcagcagcaaagagcacactgcctgctcttctagag
gaccaggatttattcccagcacccacaggtgactcaactgcttgcagctc
cagtcccaggagatctgatactgtcttctggtctctgtgggtactgtatg
tacatggtatacagacatatgtgcagatagaacactgatacacaccaagt
aaaataaataaatctttaaagagataaaataggtaaaagagaatgtttaa
aatcattttgttagaaataggtatctgtaatatttacatgtgtatataaa
tctcaaagtactcacatcaaacatacgtaacagttttgcctgggggagta
aggtgggcacattgtacacccttctctgtgcttttcttatttttaaccaa
ttttactataagggtccgcactgaagcttt
gaattccatgtctgctgtgctcccccagcgaagatcatgggatgtccagt
ttatgtagaagctataaaagaaagtcgtgacacccagatgtgagcagggg
cagctgcatcagggtggaagtcggggtctggggtgtatgatctggtcccc
aggatcagctcgtgtagagctctggacaccttgcttctctgtccacatca
gggcaactgtgtggagtgatagagcatcctacatgggtccaagaggttac
tgtcactttagtttagtgtgacttatgtagtttcccagataaaaatgatg
aaatattaactatcaagcatttgagaagtgcagatggagcacagagaaaa
gaaaatgcagactccatgggtgttttagtttcttgagacaggttctccct
ctgcagacgagtctggcctggaactctcaatccttatgcctcccttagct
ctctcagtaggagaaggttcagggtgtgatgcttatcttttaacgaaagg
ttcaagttcaggagatagaaagagtttgagggaagagaatctcacctaca
tgatgtaggttcccagcgcttcagctatcctcacccatgatccaaatcta
gtgacaagggctgggtttcccagaagatgcggcaatcatgaaagggaata
ggggtttcattttttttagagtgaagattttattcatccaatacatccaa
tagatatttattgaatgcccactgtgtgccaggcagggcctagactctga
tatagagtcagatgtacaacatccactcagtaaacttctatgcagtgaaa
gaacagaaatctactgtttaaacagtgcacaggcccatctgtctggtcac
tcccctttgtttcccaggactctcagaagtctacacagactaccaagagg
cagctacggatagactaagacctgctggatgtcctgtagactctgggtca
cgtgggtctggctttataattagtattatgagtatagtccttgctggtga
gggctccccagagaactaggcattatgggaaagaggaaatccgaaggatt
gataggtggaaggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_57448165_57449302
seq2: B6Ng01-060N22.b_49_1178

seq1  GAATTCTCTTGACCCTTACCAGACACACACCAGTGTAAGGTTATCTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGACCCTTACCAGACACACACCAGTGTAAGGTTATCTACTG  50

seq1  GGACATGTTAAACCTCCCAGGAATTACTAACCTTTCAAAGAACAGTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATGTTAAACCTCCCAGGAATTACTAACCTTTCAAAGAACAGTGACT  100

seq1  CCCACCTACAGCAGTCATCACCTGTCTCTGCATTAATAACTGCCCATTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTACAGCAGTCATCACCTGTCTCTGCATTAATAACTGCCCATTAC  150

seq1  AAACAAAGGCTTCTCTGACCAAGAGAACAGCACAAATCTACAGATAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAGGCTTCTCTGACCAAGAGAACAGCACAAATCTACAGATAAAAA  200

seq1  CAGATCTTAGACAGAGGTCTAGTGACAAAATGGTTTAGGAAACCAAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTTAGACAGAGGTCTAGTGACAAAATGGTTTAGGAAACCAAGGGC  250

seq1  AGGTTCTGAGGGCCCATGACCTTCCTGCTGTGGGTTTTGACTGTGTACGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTGAGGGCCCATGACCTTCCTGCTGTGGGTTTTGACTGTGTACGG  300

seq1  TGCCAGGAATGAATCTCCTTTTGCTTCTGCAGAAAGGTAGAACATTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGGAATGAATCTCCTTTTGCTTCTGCAGAAAGGTAGAACATTAAAT  350

seq1  GTTTGCTTGTTTGTTTGTTTGTTTGTTTTAGACAGAGTTTCTCTGTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTGTTTGTTTGTTTGTTTGTTTTAGACAGAGTTTCTCTGTGTAG  400

seq1  CTCTGGCTGTCCTGGAGCTAACTCTGTAGACCAGGCTGTCCTTGAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTGTCCTGGAGCTAACTCTGTAGACCAGGCTGTCCTTGAACTCA  450

seq1  GAAATTCGCCTGCCTCTGCCTCCCAAGTTCTGGGATTAAAGGCATGCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCGCCTGCCTCTGCCTCCCAAGTTCTGGGATTAAAGGCATGCACC  500

seq1  ACCACTGTCCAGCTGCAATTATTTTTTTATTGGATATTGTTTCTCTATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGTCCAGCTGCAATTATTTTTTTATTGGATATTGTTTCTCTATGG  550

seq1  TAGGCCACAAAACAAATTAAAGGTCTAAGATAAGAATTTGTTACATTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCACAAAACAAATTAAAGGTCTAAGATAAGAATTTGTTACATTGTG  600

seq1  TCACAACTAGACAACACAATTCAATGATCTTGACATTTAAACAGGTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACTAGACAACACAATTCAATGATCTTGACATTTAAACAGGTTACA  650

seq1  GAATATCTTCAAAACACAAAGACATAAAGTGTGAGAACTAGTGTTAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCTTCAAAACACAAAGACATAAAGTGTGAGAACTAGTGTTAGAAG  700

seq1  GGTGGAGAGATGGCTCAGCAGCAAAGAGCACACTGCCTGCTCTTCTAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGAGATGGCTCAGCAGCAAAGAGCACACTGCCTGCTCTTCTAGAG  750

seq1  GACCAGGATTTATTCCCAGCACCCACAGGTGACTCAACTGCTTGCAGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGATTTATTCCCAGCACCCACAGGTGACTCAACTGCTTGCAGCTC  800

seq1  CAGTCCCAGGAGATCTGATACTGTCTTCTGGTCTCTGTGGGTACTGTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCAGGAGATCTGATACTGTCTTCTGGTCTCTGTGGGTACTGTATG  850

seq1  TACATGGTATACAGACATATGTGCAGATAGAACACTGATACACACCAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGTATACAGACATATGTGCAGATAGAACACTGATACACACCAAGT  900

seq1  AAAAATAAATAAATCTTTAAAGAGATAAAATAGGTTAAAAGAGAATGTTT  950
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  -AAAATAAATAAATCTTTAAAGAGATAAAATAGG-TAAAAGAGAATGTTT  948

seq1  AAAATCATTTTGTTTAGAAATAGGTATCTGT-ATATTTACATGTGTATAT  999
      |||||||||||| |||||||||||||||||| ||||||||||||||||||
seq2  AAAATCATTTTG-TTAGAAATAGGTATCTGTAATATTTACATGTGTATAT  997

seq1  AAATCTCAAAGTACTCACATCAAAACATACGTAACAGTTTTGCCT-GGGG  1048
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  AAATCTCAAAGTACTCACATC-AAACATACGTAACAGTTTTGCCTGGGGG  1046

seq1  AGTAAGGGTGGGCACCATATGTACACCCTTCTCTGTGGTCTTTCTTATTT  1098
      ||||| |||||||| ||| |||||||||||||||||| | ||||||||||
seq2  AGTAA-GGTGGGCA-CAT-TGTACACCCTTCTCTGTGCT-TTTCTTATTT  1092

seq1  TTAACACATTTTACTTATAGGGTTCCGCACTGAAAGCTTT  1138
      |||||  ||||||| |||| || ||||||||| |||||||
seq2  TTAACCAATTTTAC-TATAAGGGTCCGCACTG-AAGCTTT  1130

seq1: chr13_57578821_57579880
seq2: B6Ng01-060N22.g_67_1134 (reverse)

seq1  CCCCT--TTCCAC-------TCCTTCTGATTTCCTCTTTCCCATTAATGC  41
      |||||  ||||||       |||||| |||||||||||||||| ||||||
seq2  CCCCTCCTTCCACCTATCAATCCTTCGGATTTCCTCTTTCCCA-TAATGC  49

seq1  CTAGTTCTCTGGGGAGCCCTCACCAGC-AGGACTATACTCCT-ATACTGA  89
      ||||||||||||||||||||||||||| |||||||||||| | ||||| |
seq2  CTAGTTCTCTGGGGAGCCCTCACCAGCAAGGACTATACTCATAATACT-A  98

seq1  ATTATAAAGCCAGACCCACGTGGCCCAGAGTCTACAGGACATCCAGCAGG  139
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTATAAAGCCAGACCCACGTGACCCAGAGTCTACAGGACATCCAGCAGG  148

seq1  TCTTAGTCTATCCGTAGCTGCCTCTTGGTAGTCTGTGTAGACTTCTGAGA  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGTCTATCCGTAGCTGCCTCTTGGTAGTCTGTGTAGACTTCTGAGA  198

seq1  GTCCTGGGAAACAAAGGGGAGTGACCAGACAGATGGGCCTGTGCACTGTT  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGGAAACAAAGGGGAGTGACCAGACAGATGGGCCTGTGCACTGTT  248

seq1  TAAACAGTAGATTATCTGTTCTTTCACTGCATAGAAGTTTACTGAGTGGA  289
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTAGATT-TCTGTTCTTTCACTGCATAGAAGTTTACTGAGTGGA  297

seq1  TGTTGTACATCTGACTCTATATCAGAGTCTAGGCCCTGCCTGGCACACAG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTACATCTGACTCTATATCAGAGTCTAGGCCCTGCCTGGCACACAG  347

seq1  TGGGCATTCAATAAATATCTATTGGATGTATTGGATGAATAAAATCTTCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATTCAATAAATATCTATTGGATGTATTGGATGAATAAAATCTTCA  397

seq1  CTCTAAAAAAAATGAAACCCCTATTCCCTTTCATGATTGCCGCATCTTCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAAAAAATGAAACCCCTATTCCCTTTCATGATTGCCGCATCTTCT  447

seq1  GGGAAACCCAGCCCTTGTCACTAGATTTGGATCATGGGTGAGGATAGCTG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACCCAGCCCTTGTCACTAGATTTGGATCATGGGTGAGGATAGCTG  497

seq1  AAGCGCTGGGAACCTACATCATGTAGGTGAGATTCTCTTCCCTCAAACTC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGCTGGGAACCTACATCATGTAGGTGAGATTCTCTTCCCTCAAACTC  547

seq1  TTTCTATCTCCTGAACTTGAACCTTTCGTTAAAAGATAAGCATCACACCC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCTCCTGAACTTGAACCTTTCGTTAAAAGATAAGCATCACACCC  597

seq1  TGAACCTTCTCCTACTGAGAGAGCTAAGGGAGGCATAAGGATTGAGAGTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTTCTCCTACTGAGAGAGCTAAGGGAGGCATAAGGATTGAGAGTT  647

seq1  CCAGGCCAGACTCGTCTGCAGAGGGAGAACCTGTCTCAAGAAACTAAAAC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCAGACTCGTCTGCAGAGGGAGAACCTGTCTCAAGAAACTAAAAC  697

seq1  ACCCATGGAGTCTGCATTTTCTTTTCTCTGTGCTCCATCTGCACTTCTCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGGAGTCTGCATTTTCTTTTCTCTGTGCTCCATCTGCACTTCTCA  747

seq1  AATGCTTGATAGTTAATATTTCATCATTTTTATCTGGGAAACTACATAAG  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTGATAGTTAATATTTCATCATTTTTATCTGGGAAACTACATAAG  797

seq1  TCACACTAAACTAAAGTGACAGTAACCTCTTGGACCCATGTAGGATGCTC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTAAACTAAAGTGACAGTAACCTCTTGGACCCATGTAGGATGCTC  847

seq1  TATCACTCCACACAGTTGCCCTGATGTGGACAGAGAAGCAAGGTGTCCAG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACTCCACACAGTTGCCCTGATGTGGACAGAGAAGCAAGGTGTCCAG  897

seq1  AGCTCTACACGAGCTGATCCTGGGGACCAGATCATACACCCCAGACCCCG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTACACGAGCTGATCCTGGGGACCAGATCATACACCCCAGACCCCG  947

seq1  ACTTCCACCCTGATGCAGCTGCCCCTGCTCACATCTGGGTGTCACGACTT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACCCTGATGCAGCTGCCCCTGCTCACATCTGGGTGTCACGACTT  997

seq1  TCTTTTATAGCTTCTACATAAACTGGACATCCCATGATCTTCGCTGGGGG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATAGCTTCTACATAAACTGGACATCCCATGATCTTCGCTGGGGG  1047

seq1  AGCACAGCAGACATGGAATTC  1060
      |||||||||||||||||||||
seq2  AGCACAGCAGACATGGAATTC  1068